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基于2b-RAD技术的家蚕BmNPV抗性关联基因的全基因组筛查 被引量:5
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作者 张正斌 张业顺 +4 位作者 方瑷 何小柏 徐安英 吴阳春 张国政 《蚕业科学》 CAS CSCD 北大核心 2017年第6期905-912,共8页
不同家蚕品种对家蚕核型多角体病毒(Bm NPV)的抵抗性存在较大差异,家蚕抗性品系AN、野BN对Bm NPV侵染具有较强的抵抗性。用易感家蚕品系C108分别与AN和野BN杂交、回交,构建两个抗性品系的BC3M和BC4M分离群体,利用简化基因组测序技术2b-R... 不同家蚕品种对家蚕核型多角体病毒(Bm NPV)的抵抗性存在较大差异,家蚕抗性品系AN、野BN对Bm NPV侵染具有较强的抵抗性。用易感家蚕品系C108分别与AN和野BN杂交、回交,构建两个抗性品系的BC3M和BC4M分离群体,利用简化基因组测序技术2b-RAD(基于IIB型限制性内切酶的RAD)进行亲本和杂交分离群体的基因组测序,通过生物信息学方法筛选位于染色体上与抗性相关的多态性SNP标记,进行抗性品种的基因型分析。对3个亲本及2个抗性分离群体样本基因组DNA构建的2b-RAD标签文库进行Illumina测序,获得抗性亲本AN、野BN的多态性SNP标记11 919个和12 293个。对抗性分离群体全基因组染色体的Bm NPV抗性关联SNP标记指数(SNP-index)进行分析,结果表明亲本品系AN、野BN的Bm NPV抗性相关SNP标记分布在多个染色体上,其中AN的全基因组中抗性贡献率前5位是第5、10、27、23和4号染色体,野BN的全基因组中抗性贡献率前5位的是第4、27、15、18和6号染色体,有多个SNP-index高值位点与已知Bm NPV抗性相关基因的位置具有较高的一致性。推测AN、野BN两个品系的Bm NPV高抗性与抗性主基因和其他抗性基因的联合作用有关。 展开更多
关键词 家蚕 家蚕核多角体病毒 抗性遗传 基因型组成 2b-RAD技术
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丹参晚期胚胎蛋白基因SmLEA的克隆及表达分析 被引量:4
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作者 刘丛玲 王喆之 《生物技术通报》 CAS CSCD 北大核心 2009年第5期80-84,共5页
对丹参EST序列进行Blast分析,发现一条序列与晚期胚胎丰富蛋白(late embryogenesis abundant)基因有较高的相似性,在此基础上设计引物,分别从cDNA和gDNA水平克隆到该基因的全长(Genbank注册号:AY725206),命名为SmLEA。该序列全长739 bp... 对丹参EST序列进行Blast分析,发现一条序列与晚期胚胎丰富蛋白(late embryogenesis abundant)基因有较高的相似性,在此基础上设计引物,分别从cDNA和gDNA水平克隆到该基因的全长(Genbank注册号:AY725206),命名为SmLEA。该序列全长739 bp,无内含子,包含1个长为495 bp的开放阅读框,编码164个氨基酸。序列比对结果显示,该序列与番茄的晚期胚胎丰富蛋白Lemmi9有较高的相似性(69%),推测该编码蛋白属于晚期胚胎蛋白LEA14家族成员。生物信息学显示,SmLEA所编码蛋白SmLEA的相对分子质量为17.34 kD,理论等电点为4.51,富含天冬氨酸及AS、IP、KV、VS、TIP肽段,定位于细胞质中,为稳定类蛋白。实时荧光定量PCR结果显示,该基因在丹参的根、茎、叶中均有表达,为组成型表达基因。 展开更多
关键词 晚期胚胎丰富蛋白 生物信息学 组成基因 丹参
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Effect of Genotype on Fatty Acid Composition of Several Muscles (LD, ST, PM) of Young Fattening Bulls
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作者 Tamfis Somogyi Gabriella Hol1o +1 位作者 Istvan Anton Istvan Hollo 《Journal of Life Sciences》 2011年第6期405-415,共11页
We examined the effect of linseed supplementation in finishing diet on intramuscular fat level and fatty acid composition of three bovine muscles (longissimus dorsi-LD, semitendinosus-ST, psoas major-PM), total of s... We examined the effect of linseed supplementation in finishing diet on intramuscular fat level and fatty acid composition of three bovine muscles (longissimus dorsi-LD, semitendinosus-ST, psoas major-PM), total of sixty-two young bulls, from six different genotypes Angus (A), Charolais (CH), Holstein-Friesian (H), Hungarian Grey (HG), Hungarian Simmental (HS), Charolais x Hungarian Grey F1 (CHxHG). The results showed that A bulls had the highest intramuscular fat (IM) level (3.76), particularly in PM (4.74), followed by HG (3.40), crossbred HG (3.05), CH (2.33), HS (2.21), with the lowest level for H (2.11) bulls. IMF for LD (2.87) and ST (1.77) muscles were significantly lower than PM (3.60) for all groups. SFA was significantly higher for PM than the other two, due to the high level oflM. The highest MUFA was detected in LD, significantly different from others. ST contained the highest PUFA (12.99), followed by LD (10.30) and PM (10.19). The n-6 fatty acids were affected either by breed, or by muscle type. The linoleic acid was the highest in muscle samples of Holstein bulls except for PM, while the lowest was in A bulls in all cases. The same tendency can be seen in all cases for long chain n-6 fatty acids. The overall mean of n-3 fatty acids varied among genotypes from 1.36 to 1.80%. The highest level was measured in ST of CH and H (2.19), whereas the lowest one in LD of HG (1.22). Significant differences among genotypes were shown only for PM. The level of n-3 series long chain fatty acids was the highest for ST, for LD and PM in H, CH and HS, respectively. The ratio of n-6/n-3 ranged from 4.48 to 6.22 and was significantly less favorable in H than in A bulls. The highest CLA level was detected in all cases in HG bulls. 展开更多
关键词 Beef cattle bovine muscles intramuscular fat fatty acid composition
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Characterization of promoters in Escherichia coli and application for xylitol synthesis 被引量:2
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作者 王翠薇 李哲 +3 位作者 Aamir Rasool 屈虹男 戴大章 李春 《Chinese Journal of Chemical Engineering》 SCIE EI CAS CSCD 2015年第1期234-240,共7页
Promoters are the most important tools to control and regulate the gene expression in synthetic biology and metabolic engineering. The expression of target genes in Escherichia coli is usually controlled by the high-s... Promoters are the most important tools to control and regulate the gene expression in synthetic biology and metabolic engineering. The expression of target genes in Escherichia coli is usually controlled by the high-strength inducible promoter with the result that the abnormally high transcription of these genes creates excessive metabolic load on the host, which decreases product formation. The constitutive expression systems are capable of avoiding these defects. In this study, to enrich the application of constitutive promoters in metabolic engineering, four promoters from the glycolytic pathway of E. coli were cloned and characterized using the enhanced green fluorescent protein as reporter. Among these promoters, Pgap Awas determined as the strongest one, the strength of which was about 8.92% of that of the widely used inducible promoter PT7. This promoter was used to control the expression of heterologous xylose reductase in E. coli for xylitol synthesis so as to verify its function in pathway engineering. The maximum xylitol titer(40.6 g·L-1) produced by engineered E. coli under the control of the constitutive promoter Pgap Awas obviously higher than that under the control of the inducible promoter PT7,indicating the feasibility and superiority of promoter Pgap Ain the metabolic engineering of E. coli. 展开更多
关键词 Escherichia coli PROMOTER CHARACTERIZATION Xylose reductase XYLITOL
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Conversion of the high-yield salinomycin producer Streptomyces albus BK3-25 into a surrogate host for polyketide production 被引量:3
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作者 Xiaojie Zhang Chenyang Lu Linquan Bai 《Science China(Life Sciences)》 SCIE CAS CSCD 2017年第9期1000-1009,共10页
An ideal surrogate host for heterologous production of various natural products is expected to have efficient nutrient utilization,fast growth,abundant precursors and energy supply,and a pronounced gene expression.Str... An ideal surrogate host for heterologous production of various natural products is expected to have efficient nutrient utilization,fast growth,abundant precursors and energy supply,and a pronounced gene expression.Streptomyces albus BK3-25 is a high-yield industrial strain producing type-Ⅰ polyketide sahnomycin,with a unique ability of bean oil utilization.Its potential of being a surrogate host for heterologous production of PKS was engineered and evaluated herein.Firstly,introduction of a three-gene cassette for the biosynthesis of ethylmalonyl-CoA resulted in accumulation of ethylmalonyl-CoA precursor and sahnomycin,and subsequent deletion of the sahnomycin biosynthetic gene cluster resulted in a host with rich supplies of common polyketide precursors,including malonyl-CoA,methylmalonyl-CoA,and ethylmalonyl-CoA.Secondly,the energy and reducing force were measured,and the improved accumulation of ATP and NADPH was observed in the mutant.Furthermore,the strength of a series of selected endogenous promoters based on microarray data was assessed at different growth phases,and a strong constitutive promoter was identified,providing a useful tool for further engineered gene expression.Finally,the potential of the BK3-25 derived host ZXJ-6 was evaluated with the introduction of the actinorhodin biosynthetic gene cluster from Streptomyces coelicolor,and the heterologous production of actinorhodin was obtained.This work clearly indicated the potential of the high-yield sahnomycin producer as a surrogate host for heterologous production of polyketides,although more genetic manipulation should be conducted to streamline its performance. 展开更多
关键词 surrogate host heterologous production POLYKETIDE SALINOMYCIN
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