目的:观察细胞角质素19(CK19)及消减基因P02在肝细胞癌,肝硬化组织及卵圆细胞中的表达情况.方法:采用免疫组化SP法观察8例正常肝组织,27例肝硬化组织和43例肝细胞癌组织中CK19的表达.采用DIG-probe synthesis kit,聚合酶链反应方法制备...目的:观察细胞角质素19(CK19)及消减基因P02在肝细胞癌,肝硬化组织及卵圆细胞中的表达情况.方法:采用免疫组化SP法观察8例正常肝组织,27例肝硬化组织和43例肝细胞癌组织中CK19的表达.采用DIG-probe synthesis kit,聚合酶链反应方法制备P02探针,通过原位杂交方法检测P02在肝细胞癌,肝硬化组织及卵圆细胞中的表达.结果:CK19在肝硬化组与正常肝组织之间表达率无明显差异,但在肝细胞癌组与肝硬化组之间差异有显著性(69.77% vs 25.93%,P<0.01).肝硬化组织与肝细胞癌组织中CK19标记的卵圆细胞数量有显著性差异(5.74±1.05 vs 10.51±1.78,P<0.01).P02在肝硬化和肝细胞癌中的阳性表达率分别为26.7%和80%,二者之间表达有显著性差异(P<0.01).结论:CK19可能参与了肝硬化到肝细胞癌的癌变过程.卵圆细胞与肝脏损伤后再生及癌变有关,可能是P02通过促进卵圆细胞的增殖来介导肝细胞癌的发生.展开更多
目的:采用抑制性消减杂交(suppression subtractive hybridization,SSH)技术构建汉族人狼疮性肾炎(LupusNephritis LN)肾阴虚证cDNA消减文库。方法:选择汉族人LN且中医辨证为肾阴虚证的患者以及正常人作为其对照组,进行正向和消减杂交...目的:采用抑制性消减杂交(suppression subtractive hybridization,SSH)技术构建汉族人狼疮性肾炎(LupusNephritis LN)肾阴虚证cDNA消减文库。方法:选择汉族人LN且中医辨证为肾阴虚证的患者以及正常人作为其对照组,进行正向和消减杂交。采用Trizol一步法提取总RNA,用SMART(Switch Mechanism At 5 end of RNA Template)技术逆转录并扩增总cDNA,用RsaI酶切基因组cDNA成大小不等的片段,分别与两种不同的接头连接,进行两次消减杂交及两次抑制性PCR,将PCR产物与U载体连接,经蓝白斑筛选后,再用PCR方法插入片段筛选出阳性重组质粒,构建LN肾阴虚证消减文库。结果:用SSH方法筛选出了LN肾阴虚证的差异cDNA片段,得到了450个白色克隆,再经PCR方法快速筛选出阳性重组质粒,从而成功地构建了LN肾阴虚证的cDNA消减文库。结论:SSH技术能够快速有效地分离差异cDNA片段以构建LN肾阴虚证cDNA消减文库,为进一步筛选和克隆LN肾阴虚证相关基因奠定了基础。展开更多
In searching for differentially expressed genes in human uterine leiomyomas (ULs), suppression sub-tractive hybridization was used to construct an UL up-regulated library, which turned out to represent 88genes. After ...In searching for differentially expressed genes in human uterine leiomyomas (ULs), suppression sub-tractive hybridization was used to construct an UL up-regulated library, which turned out to represent 88genes. After two rounds of screening by reverse Northern analysis, twenty genes were proved to be up-regulated, including seventeen known genes and three genes with unknown function. All these genes werefirstly associated with UL. Three genes with notable difference were selected for Northern confirmationOur results proved the authenticity of the twenty genes. One gene named Phospholipase A2 (PLA2) showedup-regulation in 4/6 of the patients and investigation of tissue distribution indicated that it had obviousexpression in prostate, testis, liver, heart and skeletal muscle.展开更多
The molecular basis of color polymorphism in the shells of the pearl oyster Pinctada fucata is largely unknown. We developed a red-shelled family line and used suppression subtractive hybridization （SSH） to screen f...The molecular basis of color polymorphism in the shells of the pearl oyster Pinctada fucata is largely unknown. We developed a red-shelled family line and used suppression subtractive hybridization （SSH） to screen for differentially expressed genes in red- and non-red-shelled pearl oysters. We constructed forward and reverse cDNA subtractive libraries consisting of 2 506 and 797 clones, respectively. Among 343 randomly selected clones in the forward library, 304 sequences were identified in GenBank using BLASTx and BLASTn. Of the 304 sequences, 13 showed no similarity to known sequences and 291 were matched with known genes of the pearl oyster, including shematrin-1, shematrin-2, shematrin-6, shematrin-7, nacrein, nacrein-like protein, aspein for shell matrix protein, glycine-rich protein, mantle gene 5, 28S, EST00031, EST00036, 16S, and COl. In the reverse library, 7 clones were sequenced and analyzed by BLAST. Two sequences shared similarity with EST00036 from the P. fucata subtraction cDNA library, four with the P. fucata mitochondrial gene for 16S rRNA and 1 with P. fucata shematrin-2. We evaluated the expression of 12 genes from the forward library using RT PCR. Two sequences matched with 16S and CO1 so were considered to be false positives. The remaining 10 sequences were differentially expression in the red-shelled pearl oysters. Our results suggest that differential expression of these genes may be related to color variation in the red-shelled family line of the pearl oyster.展开更多
Environmental conditions, including ambient temperature, play important roles in survival growth development, and reproduction of the Japanese sea cucumber, Apostichopus japonicus. Low temperatures result in slowed gr...Environmental conditions, including ambient temperature, play important roles in survival growth development, and reproduction of the Japanese sea cucumber, Apostichopus japonicus. Low temperatures result in slowed growth and skin ulceration disease. In a previous study, we investigated the effect of low temperature on gene expression profiles inA.japonicus by suppression subtractive hybridization （SSH）. Genes encoding Ferritin, Lysozyme, Hsp70, gp96, and AjToll were selected from a subtracted cDNA library of A. japonicus under acute cold stress. The transcriptional expression profiles of these genes were investigated in different tissues （coelomocyte, respiratory tree, intestine, longitudinal muscle） after exposure to acute and mild temperature dropping treatments. The results show that （1） the five cold-tolerance-related genes were found in all four tissues and the highest mRNA levels were observed in coelomocyte and respiratory tree; （2） under the temperature dropping treatments, three types of transcriptional regulation patterns were observed： primary suppression followed by up-regulation at -2℃, suppressed expression throughout the two treatments, and more rarely an initial stimulation followed by suppression; and （3） gene expression suppression was more severe under acute temperature dropping than under mild temperature dropping treatment. The five cold-tolerance-related genes that were ,distributed mainly in coelomocyte and respiratory tissues were generally down-regulated by low temperature stress but an inverse up-regulation event was found at the extreme temperature （-2℃）.展开更多
Suppresssion subtractive hybridization (SSH) was preformed to compare gene expression profiles of PIH patients and normal pregnancy placentas. The subtractive cDNA library of PIH placenta was set up and screedned. Dif...Suppresssion subtractive hybridization (SSH) was preformed to compare gene expression profiles of PIH patients and normal pregnancy placentas. The subtractive cDNA library of PIH placenta was set up and screedned. Differential cDNAs were cloned, and sequenced by T 7 primer methodology. One hundred and three differential cDNAs were isolated by SSH. Sequencing and BLAST analysis showed 90 inserts shared more than 95% homolog with sequences in the GenBank/EMBL database. We identified 36 putative genes including pregnancy-specific glycoprotein gene (BC005924), serine protease inhibitor gene(BC012868), VEGFR-1 gene(AF063657, etc.展开更多
Objective To construct a renal cell carcinoma (RCC) cDNA subtractive library using suppression subtractive hybridization.Methods Polyadenylated RNA ［Poly (A)+ RNA］ was isolated from tissues of RCC and normal kidne...Objective To construct a renal cell carcinoma (RCC) cDNA subtractive library using suppression subtractive hybridization.Methods Polyadenylated RNA ［Poly (A)+ RNA］ was isolated from tissues of RCC and normal kidney, and single-strand cDNAs and double-strand cDNAs were synthesized in turn. RCC cDNAs were divided into two groups and ligated to the specific adaptors l and 2, and then hybridized with normal kidney cDNA twice with two rounds of suppression PCR. Second round PCR products were cloned to T/A plasmid vectors to set up the subtractive library. One hundred clones were randomly picked to perform enzyme digest analysis, and some underwent sequence analysis and Northern blot to identify RCC specifically expressed genes. SMART RACE procedure was operated to clone full length novel RCC specifically expressed genes.Results A human RCC subtractive library with high subtractive efficiency was successfully set up. The amplified library contains 350 positive clones. Random analysis of 100 clones with enzyme restriction showed that 85 plasmids in the clones contained 50-400?bp inserts. Sequence analysis was performed for 10 clones. All the 10 sequences were unknown before and derived from 6 unique, novel genes among which the cDNA insert RCC18 had five copies. Northern blot analysis showed that RCC18 cDNA was highly expressed in RCC, but no signal could be detected in normal kidney. Using SMART RACE technique, we obtained the full length of the novel gene RCC18.Conclusions The constructed cDNA subtractive library of human RCC is a highly efficient one and lays a solid foundation for large scale screening and cloning new and specific oncogenes or tumor suppressor genes of RCC. The novel specifically expressed genes provided an important clue for studying the mechanisms of occurrence and development of RCC.展开更多
文摘目的:观察细胞角质素19(CK19)及消减基因P02在肝细胞癌,肝硬化组织及卵圆细胞中的表达情况.方法:采用免疫组化SP法观察8例正常肝组织,27例肝硬化组织和43例肝细胞癌组织中CK19的表达.采用DIG-probe synthesis kit,聚合酶链反应方法制备P02探针,通过原位杂交方法检测P02在肝细胞癌,肝硬化组织及卵圆细胞中的表达.结果:CK19在肝硬化组与正常肝组织之间表达率无明显差异,但在肝细胞癌组与肝硬化组之间差异有显著性(69.77% vs 25.93%,P<0.01).肝硬化组织与肝细胞癌组织中CK19标记的卵圆细胞数量有显著性差异(5.74±1.05 vs 10.51±1.78,P<0.01).P02在肝硬化和肝细胞癌中的阳性表达率分别为26.7%和80%,二者之间表达有显著性差异(P<0.01).结论:CK19可能参与了肝硬化到肝细胞癌的癌变过程.卵圆细胞与肝脏损伤后再生及癌变有关,可能是P02通过促进卵圆细胞的增殖来介导肝细胞癌的发生.
文摘目的:采用抑制性消减杂交(suppression subtractive hybridization,SSH)技术构建汉族人狼疮性肾炎(LupusNephritis LN)肾阴虚证cDNA消减文库。方法:选择汉族人LN且中医辨证为肾阴虚证的患者以及正常人作为其对照组,进行正向和消减杂交。采用Trizol一步法提取总RNA,用SMART(Switch Mechanism At 5 end of RNA Template)技术逆转录并扩增总cDNA,用RsaI酶切基因组cDNA成大小不等的片段,分别与两种不同的接头连接,进行两次消减杂交及两次抑制性PCR,将PCR产物与U载体连接,经蓝白斑筛选后,再用PCR方法插入片段筛选出阳性重组质粒,构建LN肾阴虚证消减文库。结果:用SSH方法筛选出了LN肾阴虚证的差异cDNA片段,得到了450个白色克隆,再经PCR方法快速筛选出阳性重组质粒,从而成功地构建了LN肾阴虚证的cDNA消减文库。结论:SSH技术能够快速有效地分离差异cDNA片段以构建LN肾阴虚证cDNA消减文库,为进一步筛选和克隆LN肾阴虚证相关基因奠定了基础。
文摘目的:采用抑制性消减杂交(suppression subtractive hybridization,SSH)技术构建汉族人慢性肾炎(chronicglomerulonephritis CGN)肾阳虚证cDNA消减文库。方法:选择汉族人CGN且中医辨证为肾阳虚证的患者以及正常人作为其对照组,进行正向和反向消减杂交。采用Trizol一步法提取总RNA,用SMART(Switch Mechanism At 5 end of RNATemplate)技术逆转录并扩增总cDNA,用RsaⅠ酶切基因组cDNA成大小不等的片断,分别与两种不同的接头连接,进行2次消减杂交及两交抑制性PCR,建立抑制性消减杂交(suppression subtractive hybridization,SSH),在SSH基础上进行镜像选择(mirror orientation selection,MOS),将PCR产物与U载本连接,经蓝白斑筛选后,再用PCR方法插入片段筛选出阳性重组质粒,构建CGN肾阳虚证消减文库。结果:用SSH方法筛选出了CGN肾阳虚证的差异cDNA片段,得到了443个白色克隆,再经PCR方法快速筛选出阳性重组质粒,从而成功地构建了CGN肾阳虚证的cDNA消减文库。结论:SSH技术能够快速有效地分离差异cDNA片段以构建CGN肾阳虚证cDNA消减文库,为进一步筛选和克隆CGN肾阳虚证相关基因奠定了基础。
文摘In searching for differentially expressed genes in human uterine leiomyomas (ULs), suppression sub-tractive hybridization was used to construct an UL up-regulated library, which turned out to represent 88genes. After two rounds of screening by reverse Northern analysis, twenty genes were proved to be up-regulated, including seventeen known genes and three genes with unknown function. All these genes werefirstly associated with UL. Three genes with notable difference were selected for Northern confirmationOur results proved the authenticity of the twenty genes. One gene named Phospholipase A2 (PLA2) showedup-regulation in 4/6 of the patients and investigation of tissue distribution indicated that it had obviousexpression in prostate, testis, liver, heart and skeletal muscle.
基金Supported by National High Technology Research and Development Program of China (863 Program) (No. 2006AA10A409)the Knowledge Innovation Program of the South China Sea Institute of Oceanology, Chinese Academy of Sciences (No. SQ200906)+2 种基金the Science and Technology Program of Guangdong Province (No. 2008A020100004)the National Key Technology Research and Development Program (No. 2007BAD29B01-8)the Key Plan for Marine Development of Guangdong Province (No. A200708C01)
文摘The molecular basis of color polymorphism in the shells of the pearl oyster Pinctada fucata is largely unknown. We developed a red-shelled family line and used suppression subtractive hybridization （SSH） to screen for differentially expressed genes in red- and non-red-shelled pearl oysters. We constructed forward and reverse cDNA subtractive libraries consisting of 2 506 and 797 clones, respectively. Among 343 randomly selected clones in the forward library, 304 sequences were identified in GenBank using BLASTx and BLASTn. Of the 304 sequences, 13 showed no similarity to known sequences and 291 were matched with known genes of the pearl oyster, including shematrin-1, shematrin-2, shematrin-6, shematrin-7, nacrein, nacrein-like protein, aspein for shell matrix protein, glycine-rich protein, mantle gene 5, 28S, EST00031, EST00036, 16S, and COl. In the reverse library, 7 clones were sequenced and analyzed by BLAST. Two sequences shared similarity with EST00036 from the P. fucata subtraction cDNA library, four with the P. fucata mitochondrial gene for 16S rRNA and 1 with P. fucata shematrin-2. We evaluated the expression of 12 genes from the forward library using RT PCR. Two sequences matched with 16S and CO1 so were considered to be false positives. The remaining 10 sequences were differentially expression in the red-shelled pearl oysters. Our results suggest that differential expression of these genes may be related to color variation in the red-shelled family line of the pearl oyster.
基金Supported by the National High Technology Research and Development Program of China(863 Program)(No.2012AA10A412)the National Natural Science Foundation of China(No.31072230)
文摘Environmental conditions, including ambient temperature, play important roles in survival growth development, and reproduction of the Japanese sea cucumber, Apostichopus japonicus. Low temperatures result in slowed growth and skin ulceration disease. In a previous study, we investigated the effect of low temperature on gene expression profiles inA.japonicus by suppression subtractive hybridization （SSH）. Genes encoding Ferritin, Lysozyme, Hsp70, gp96, and AjToll were selected from a subtracted cDNA library of A. japonicus under acute cold stress. The transcriptional expression profiles of these genes were investigated in different tissues （coelomocyte, respiratory tree, intestine, longitudinal muscle） after exposure to acute and mild temperature dropping treatments. The results show that （1） the five cold-tolerance-related genes were found in all four tissues and the highest mRNA levels were observed in coelomocyte and respiratory tree; （2） under the temperature dropping treatments, three types of transcriptional regulation patterns were observed： primary suppression followed by up-regulation at -2℃, suppressed expression throughout the two treatments, and more rarely an initial stimulation followed by suppression; and （3） gene expression suppression was more severe under acute temperature dropping than under mild temperature dropping treatment. The five cold-tolerance-related genes that were ,distributed mainly in coelomocyte and respiratory tissues were generally down-regulated by low temperature stress but an inverse up-regulation event was found at the extreme temperature （-2℃）.
基金Supported in part by the National Natural Science Foundation of China (30070787)
文摘Suppresssion subtractive hybridization (SSH) was preformed to compare gene expression profiles of PIH patients and normal pregnancy placentas. The subtractive cDNA library of PIH placenta was set up and screedned. Differential cDNAs were cloned, and sequenced by T 7 primer methodology. One hundred and three differential cDNAs were isolated by SSH. Sequencing and BLAST analysis showed 90 inserts shared more than 95% homolog with sequences in the GenBank/EMBL database. We identified 36 putative genes including pregnancy-specific glycoprotein gene (BC005924), serine protease inhibitor gene(BC012868), VEGFR-1 gene(AF063657, etc.
基金ThisprojectwassupportedbyagrantfromtheNationalNaturalScienceFoundationofChina (No 39870 841)
文摘Objective To construct a renal cell carcinoma (RCC) cDNA subtractive library using suppression subtractive hybridization.Methods Polyadenylated RNA ［Poly (A)+ RNA］ was isolated from tissues of RCC and normal kidney, and single-strand cDNAs and double-strand cDNAs were synthesized in turn. RCC cDNAs were divided into two groups and ligated to the specific adaptors l and 2, and then hybridized with normal kidney cDNA twice with two rounds of suppression PCR. Second round PCR products were cloned to T/A plasmid vectors to set up the subtractive library. One hundred clones were randomly picked to perform enzyme digest analysis, and some underwent sequence analysis and Northern blot to identify RCC specifically expressed genes. SMART RACE procedure was operated to clone full length novel RCC specifically expressed genes.Results A human RCC subtractive library with high subtractive efficiency was successfully set up. The amplified library contains 350 positive clones. Random analysis of 100 clones with enzyme restriction showed that 85 plasmids in the clones contained 50-400?bp inserts. Sequence analysis was performed for 10 clones. All the 10 sequences were unknown before and derived from 6 unique, novel genes among which the cDNA insert RCC18 had five copies. Northern blot analysis showed that RCC18 cDNA was highly expressed in RCC, but no signal could be detected in normal kidney. Using SMART RACE technique, we obtained the full length of the novel gene RCC18.Conclusions The constructed cDNA subtractive library of human RCC is a highly efficient one and lays a solid foundation for large scale screening and cloning new and specific oncogenes or tumor suppressor genes of RCC. The novel specifically expressed genes provided an important clue for studying the mechanisms of occurrence and development of RCC.
