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基因组移位变换中值问题的近似算法
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作者 王骁力 夏云清 《河南大学学报(自然科学版)》 CAS 北大核心 2011年第4期339-344,共6页
讨论基因组在移位变换下的中值问题(TMP).给定m个基因组,每个基因组含N条染色体,TMP问题是求另一个基因组,使该基因组与其它基因组之间的移位距离和最小.对无向模型,用转化为旅行售货员问题的断点中值问题给出其近似解;对有向模型,借助... 讨论基因组在移位变换下的中值问题(TMP).给定m个基因组,每个基因组含N条染色体,TMP问题是求另一个基因组,使该基因组与其它基因组之间的移位距离和最小.对无向模型,用转化为旅行售货员问题的断点中值问题给出其近似解;对有向模型,借助于求图的最大权匹配给出TMP问题的近似算法. 展开更多
关键词 移位距离 中值问题 基因组重构 近似算法
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Study on DNA Immunization by Recombinants Encoding Japanese Encephalitis Virus prME and E Proteins 被引量:1
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作者 冯国和 赵桂珍 +3 位作者 Takegami Tsutomu 窦晓光 乔光彦 周子文 《Journal of Microbiology and Immunology》 2003年第1期85-90,共6页
To study the expression characteristic of Japanese encephalitis virus (JEV) prME and E proteins and the efficacy of DNA immunization by different recombinant plasmids containing JEV prME (2001 bp) and E (1500 bp) gene... To study the expression characteristic of Japanese encephalitis virus (JEV) prME and E proteins and the efficacy of DNA immunization by different recombinant plasmids containing JEV prME (2001 bp) and E (1500 bp) genes, two recombinants (pJME and pJE) containing JEV prME and E genes fused with FLAG were constructed and then transfected into HepG2 and COS-1 cells by liposome fusion. The expression feature of FLAG-prME (about 72 kDa) and FLAG-E (about 54 kDa) proteins in transfected cells were analyzed by Western blot and two antibody systems (anti-FLAG and anti-E). BALB/c mice were immunized with 100 μg of two kinds of recombinants by intramuscular injection, and JEV JaGAr-01 strains (10 5 PFU/100 μl)were given to BALB/c mice by intraperioneal injection 3 wk after twice DNA immunization by a lethal virus challenge. BALB/c mice were observed for 21 days after challenge. 80% plaque reduction neutralization test was performed to titrate neutralization antibody before and after viral challenge. It was found that the expression of proteins associated with pJME and pJE was determined in transfected cells with anti-FLAG and a new protein of 11 kDa was detected in HepG2 and COS-1 cells transfected with pJME. Only E (53 kDa) protein was identified as transfected with pJME using anti-E. Higher level of neutralization antibodies and the efficacy of protective immunity were induced with pJME immunization, and were similar to those induced by inactivated Japanese encephalitis vaccine, but were better than those induced with pJE. It concludes that the expression level from prM to E proteins of JEV is different in vitro, and the in vitro expression efficiency of pJME was better than that of pJE. FLAG-prME protein expressed by pJME could be cleaved by peptidase from host. The efficacy of DNA immunization is correlated to the expression characterization of related proteins expressed in vitro. 展开更多
关键词 Japanese encephalitis virus Recombinant plasmid Protein expression DNA immunization
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