With designed specific primers based on Potato leafroll virus(PLRV) coat protein(CP) gene sequence,one PCR fragment(about 0.6 kb) was amplified by reverse transcription polymerase chain reaction(RT-PCR) using the tota...With designed specific primers based on Potato leafroll virus(PLRV) coat protein(CP) gene sequence,one PCR fragment(about 0.6 kb) was amplified by reverse transcription polymerase chain reaction(RT-PCR) using the total RNA as template extracted from virus infected potato plant collected in Zhaotong,Yunnan province.The fragment was cloned into pGEM-T easy vector and sequenced.The sequence was compared with that of homologous gene of other PLRV isolates.The results showed it had high homology with the other isolates(the highest homology reached 99.2% of nucleic acid).Based on CP amino acid sequence the phylogenic tree of PLRV was established and the isolates were clustered into many groups.展开更多
Viral nervous necrosis (VNN) is a worldwide disease among teleost fish. In the mainland of China, VNN was first identified in 2 species of hatchery-reared groupers, Epinephelus akaara and E. coioides. In the present s...Viral nervous necrosis (VNN) is a worldwide disease among teleost fish. In the mainland of China, VNN was first identified in 2 species of hatchery-reared groupers, Epinephelus akaara and E. coioides. In the present study, samples were collected from larvae of E. akaara with signs of VNN in Dayawan bay which is located in southern China. The complete viral coat protein gene was amplified using extracted total RNA as template. The reverse transcription polymerase chain reaction (RT-PCR) amplification was performed using primers containing a heterologous restriction site for NotI. PCR products were cloned into pcDNA3 vector and sequenced. The results indicated that the coat protein gene of Dayawan isolate (RG-CN) was 1056 bases in length and contained a single open reading frame (ORF) of 1017 bases encoding a protein of 338 amino acids. The sequence similarities between the coat protein gene of RG-CN and other 8 isolates of NNV from Dayawan, Taiwan, Japan, Singapore and France were 79.1%-99.5% at the nucleotide level and 83.7%-100% at the amino acid level, respectively.The homology between RG-CN and the other 5 isolates from groupers was high and relatively lower between RG-CN and guppy nervous necrosis virus (GNNV), sea bass nervous necrosis virus (DIEV), but more divergences existed between RG-CN and striped jack nevous necrosis virus (SJNNV). Compared with SJNNV, RG-CN and the other 7 isolates all lacked 6 nucleotides and 2 amino acids in the same positions. Based on the result of molecular phylogenetic analysis, Dayawan isolate belongs to red-spotted grouper nervous necrosis virus (RGNNV) genotype.展开更多
根据烟草蚀纹病毒(TEV)CP序列设计合成上下游引物,利用RT-PCR方法获得了TEV CP基因,大小为789 bp。将TEV CP基因克隆到pM D 18-T S im p le V ector,经E coRⅠ/S acⅠ双酶切得到目的片段,并将其定向插入到pET 30a载体中构建了原核表达载...根据烟草蚀纹病毒(TEV)CP序列设计合成上下游引物,利用RT-PCR方法获得了TEV CP基因,大小为789 bp。将TEV CP基因克隆到pM D 18-T S im p le V ector,经E coRⅠ/S acⅠ双酶切得到目的片段,并将其定向插入到pET 30a载体中构建了原核表达载体pET 30-TEV CP,重组质粒经E coRⅠ和S acⅠ双酶切鉴定及基因测序验证正确后,转化大肠杆菌BL 21,用IPTG进行诱导表达。结果表明,TEV CP基因在大肠杆菌中获得了高效表达,分子量约为37 ku。以表达产物为抗原免疫家兔,制备了特异性抗血清,其效价为1/1 204。W estern b lot检测结果表明,制备的抗血清可用于检测田间的发病植株。展开更多
文摘With designed specific primers based on Potato leafroll virus(PLRV) coat protein(CP) gene sequence,one PCR fragment(about 0.6 kb) was amplified by reverse transcription polymerase chain reaction(RT-PCR) using the total RNA as template extracted from virus infected potato plant collected in Zhaotong,Yunnan province.The fragment was cloned into pGEM-T easy vector and sequenced.The sequence was compared with that of homologous gene of other PLRV isolates.The results showed it had high homology with the other isolates(the highest homology reached 99.2% of nucleic acid).Based on CP amino acid sequence the phylogenic tree of PLRV was established and the isolates were clustered into many groups.
文摘Viral nervous necrosis (VNN) is a worldwide disease among teleost fish. In the mainland of China, VNN was first identified in 2 species of hatchery-reared groupers, Epinephelus akaara and E. coioides. In the present study, samples were collected from larvae of E. akaara with signs of VNN in Dayawan bay which is located in southern China. The complete viral coat protein gene was amplified using extracted total RNA as template. The reverse transcription polymerase chain reaction (RT-PCR) amplification was performed using primers containing a heterologous restriction site for NotI. PCR products were cloned into pcDNA3 vector and sequenced. The results indicated that the coat protein gene of Dayawan isolate (RG-CN) was 1056 bases in length and contained a single open reading frame (ORF) of 1017 bases encoding a protein of 338 amino acids. The sequence similarities between the coat protein gene of RG-CN and other 8 isolates of NNV from Dayawan, Taiwan, Japan, Singapore and France were 79.1%-99.5% at the nucleotide level and 83.7%-100% at the amino acid level, respectively.The homology between RG-CN and the other 5 isolates from groupers was high and relatively lower between RG-CN and guppy nervous necrosis virus (GNNV), sea bass nervous necrosis virus (DIEV), but more divergences existed between RG-CN and striped jack nevous necrosis virus (SJNNV). Compared with SJNNV, RG-CN and the other 7 isolates all lacked 6 nucleotides and 2 amino acids in the same positions. Based on the result of molecular phylogenetic analysis, Dayawan isolate belongs to red-spotted grouper nervous necrosis virus (RGNNV) genotype.
文摘根据烟草蚀纹病毒(TEV)CP序列设计合成上下游引物,利用RT-PCR方法获得了TEV CP基因,大小为789 bp。将TEV CP基因克隆到pM D 18-T S im p le V ector,经E coRⅠ/S acⅠ双酶切得到目的片段,并将其定向插入到pET 30a载体中构建了原核表达载体pET 30-TEV CP,重组质粒经E coRⅠ和S acⅠ双酶切鉴定及基因测序验证正确后,转化大肠杆菌BL 21,用IPTG进行诱导表达。结果表明,TEV CP基因在大肠杆菌中获得了高效表达,分子量约为37 ku。以表达产物为抗原免疫家兔,制备了特异性抗血清,其效价为1/1 204。W estern b lot检测结果表明,制备的抗血清可用于检测田间的发病植株。
