DGGE技术在环境微生物多样性研究中的应用

微生物是净化环境的主要作用者之一,DGGE技术主要是指变性梯度凝胶电脉法,主要运用于培育和鉴定土壤微生物的成分,这种技术方法具有可靠性强、重复性好以及操作方便简单等优点,具有积极推广和使用的意义。下面本文将介绍DGGE技术的基本构成原理,并且还要介绍DGGE技术的基本工作流程,然后根据分析DGGE技术在实际工作中的运用,最终指出DGGE技术的实际使用效果。希望通过本文的介绍和分析,能帮助有关人员更好的掌握和了解DGGE技术,能进一步推广这种技术。

Microbial Community Characteristics in a Degraded Wetland of the Yellow River Delta

Five different sites with a soluble salt gradient of 3.0-17.7 g kg^-1 dry soil from the coast to the inland were selected, and the microbial population size, activity and diversity in the rhizospheres of five common plant species and the adjacent bulk soils （non-rhizosphere） were compared in a degraded wetland of the Yellow River Delta, Shandong Province, China to study the effects of soil environment （salinity, seasonality, depth, and rhizosphere） on microbial communities and the wetland＇s ecological function, thus providing basic data for the bioremediation of degraded wetlands. There was a significant negative linear relationship between the salinity and the total number of microorganisms, overall microbial activity, or culturable microbial diversity. Salinity adversely affected the microbial community, and higher salinity levels resulted in smaller and less active microbial communities. Seasonal changes were observed in microbial activity but did not occur in the size and diversity. The microbial size, activity and diversity decreased with increasing soil depth. The size, activity and diversity of culturable microorganisms increased in the rhizospheres. All rhizospheres had positive effects on the microbial communities, and common seepweed had the highest rhizosphere effect. Three halophilic bacteria （Pseudomonas mendocina, Burkholderia glumae, and Acinetobacter johnsonii） were separated through BIOLOG identification, and common seepweed could be recommended for bioremediation of degraded wetlands in the Yellow River Delta.

Characterization and Enhancement of Microbial Biodiversity in Digestate in the Agronomic Field

The possibility of producing biogas and methane from two phases olive pomace was considered using anaerobic digestion and the microbial characteristic of digestate for the agrarian use was analyzed. In the work, the main aim was to obtain biogas, made from at least 50% methane, and a digestate that can be used in the field of agronomy, from the anaerobic digestion of the substrates. The tests were carried out by digesting different mixtures of the two-phase pomace, mulberry leaves and mud civil wastewater （pre-digested） in a batch system and in anaerobic mesophilic conditions （35 ~C）. The substrates were properly homogenized in order to obtain mixtures of known and uniform composition. The initial and final STi （Total Solids） and initial SVi （Volatile Solids）, the concentration of chemical oxygen demand and total phenols were measured and the process yield （m3/t SV） was quantified with standard procedure. The objectives of the study were the analysis of microbial biodiversity developed during fermentation of mixtures based products and the microbial communities corresponding to Eubacteria, Archaea and Fungiwas analyzed. The suitability of the digestate for agronomical use was evaluated by estimating pathogens bacteria that may be present and by index of inhibition of plant organisms model.

From Farming to Engineering： The Microbiota and Allergic Diseases

The steady increase of lgE-dependent allergic diseases after the Second World War is a unique phenomenon in the history of humankind. Numerous cross-sectional studies, comprehensive longitudinal cohort studies of children living in various types of environment, and mechanistic experimental studies have pointed to the disappearance of ＂protective factors＂ related to major changes in lifestyle and environment. A common unifying concept is that of the immunoregulatory role of the gut microbiota. This review focuses on the protection against allergic disorders that is provided by the farming environment and by exposure to microbial diversity. It also questions whether and how microbial bioengineering will be able in the future to restore an interplay that was beneficial to the proper immunological development of children in the past and that was irreversibly disrupted by changes in lifestyle. The protective ＂farming environment＂ includes independent and additional influences： contact with animals, stay in barns/stables, and consumption of unprocessed milk and milk products, by mothers during pregnancy and by children in early life. More than the overall quanti- ty of microbes, the biodiversity of the farm microbial environment appears to be crucial for this protection, as does the biodiversity of the gut microbiota that it may provide. Use of conventional probiotics, especially various species or strains of Lactobacillus and Bifidobacterium, has not fulfilled the expectations of allergists and pediatricians to prevent allergy. Among the specific organisms present in cowsheds that could be used for prevention, Acinetobacter （A.） lwoffii F78, Lactococcus （ L.） lactis G121, and Staphylococcus （S.） sciuri W620 seem to be the most promising, based on experimental studies in mouse models of allergic respiratory diseases. However, the development of a new generation of probiotics based on very productive research on the farming environment faces several obstacles that cannot be overcome without a close collaboration between microbiologists, immunologists, and bioengineers, as well as pediatricians, allergists, specialists of clinical trials, and ethical committees.

Influence of functionalized graphene on the bacterial and fungal diversity of Vicia faba rhizosphere soil

The effect of functionalized graphene on the growth and development of Vicia faba L.was investigated by analyzing its impact on the composition and diversity of the microbial community in rhizosphere peat soil.Seedlings of V.faba planted in this peat soil were treated with either distilled water(CK)or 25 mg·L^(−1)(G25)of functionalized graphene solution.Results showed that the height and root length of V.faba seedlings in the G25 group were significantly larger than those in CK group.The microbial com-munity was analyzed by amplifying and sequencing the 16S rRNA gene V_(3)-V_(4) region of bacteria and internal transcribed spacer re-gion of fungi in rhizosphere soil using Illumina MiSeq technology.Alpha and beta diversity analysis indicated that functionalized graphene increased the richness and diversity of bacteria and fungi in the V.faba rhizosphere peat soil.The abundances of three ni-trogen cycling-related bacteria,Hydrogenophaga,Sphingomonas and Nitrosomonadaceae,were also altered after treatment with the functionalized graphene.The relative abundance of Basilicum,related to soil phosphorus solubilization,decreased in the fungal com-munity,while the relative abundance of Clonostachys and Dimorphospora,which exhibited strong biological control over numerous fungal plant pathogens,nematodes and insects,increased in the soil after functionalized graphene treatment.Redundancy analysis re-vealed that the potential of hydrogen(pH),organic matter,and total phosphorus contributed the most to the changes in bacterial and fungal community composition in the rhizosphere soil.Overall,our findings suggested that the addition of functionalized graphene altered the relative abundances of nitrogen and phosphorus cycling-related microorganisms in peat soil,promoting changes in the physicochemical properties of the soil and ultimately leading to the improved growth of V.faba plants.

Mineral weathering and element cycling in soil-microorganism-plant system

Soil is an essential part of the critical zone,and soil-microbe-plant system serves as a key link among lithosphere,biosphere,atmosphere and hydrosphere.As one of the habitats with the richest biodiversity,soil plays a critical role in element biogeochemistry on the earth surface(weathered crust).Here we review the soil biological processes that are relevant to mineral weathering,element cycling,and transformation,with an emphasis on rock weathering mediated by soil microbes,plant root and the rhizosphere.