从中药“性-构关系”探索构建寒热药性成分要素表征体系的研究构想

中药药性理论是中医药理论体系中的重要组成部分,中药药性理论的物质基础研究一直是中医药科学研究领域中的热点,也面临一些困境。本文在中药药性"性-效-物质三元论"假说基础上,进一步探讨中药药性及其成分结构之间的关联关系,提出中药"性-构关系"研究的构想,讨论在分子结构层次利用系统论的思想与信息论的科学方法从宏观角度解析中药药性,以期从中药"性-构关系"研究中探索寒热药性成分要素表征体系的构建,并对其研究方法做了分析。研究结果显示,Gibbs Free Energy等结构参数与中药寒热药性间存在非常强的关联关系,提示中药药性与相关成分的结构之间可能存在一定的关联关系,从中药"性-构关系"探索构建寒热药性成分要素表征体系值得进一步深入研究,可以为中药药性理论现代研究和科学诠释探索一条新的思路。

基于多维结构描述符的中药“性-构”关系研究

目的:为了解析中药寒热药性与其成分之间的相关关系,从物质基础层面诠释中药寒热药性的科学内涵。方法:筛选《中国药典》第一部明确有主要有效成分记载的植物类中药共计334种,中药主要成分280种,计算每种成分的分子描述符(包括一维、二维、三维及半经验量化计算分子描述符),通过广义规则归纳算法(Generalized Rule Induction,GRI)筛选强相关的分子描述符。结果:与中药寒热药性相关性较强的主要成分分子结构描述符多与分子的能量状态有关系,分子能量状态越高,与中药热性关联关系越大;而分子能量越低,与中药寒性关联关系越大;而平性中药不明显。除分子能量状态外,中药药性还可能与其主要成分的脂水分配系数、拓扑分子极性表面积,碳、氢、氧原子数,氢键供体数目等分子结构描述符具有一定的关联关系。结论:中药药性确实与中药主要成分的分子结构具有一定的关联关系,其中最重要的分子描述符是三维分子描述符中的分子能量,提示中药药性作用可能与中药主要有效成分的分子能量状态以及对机体能量代谢的影响而产生的综合效应有关。

纳米载体微结构对药物装载与控释性能的影响

本文探讨纳米载体微观结构变化的影响因素,以及随着微结构的改变,载体宏观性状和载药释药性能变化,旨在阐述药物载体的"结构-性能"的相关性。

基于化学结构相似性的植物类中药“性-构”关系分析

目的:分析中药药性与其主要成分结构之间的关联程度。方法:筛选《中华人民共和国药典》2015版一部中分别来源于寒性与热性植物类中药的主要成分共209种,以基于原子环境(AE)之间的海灵格距离作为化学结构相似指数的计算方法,对来源于寒性中药和热性中药化合物之间的化学结构相似性进行计算和分析。结果:来源于相同药性中药的化合物之间的结构相似程度较高,来源于不同药性的化合物化学结构上的相似程度较低。结论:植物类中药中部分主要成分的结构与其药性之间存在一定的关联关系,从中药'性-构'关系进行中药药性物质基础的研究具有一定的科学依据。

Application of PCA and HCA to the Structure-Activity Relationship Study of Fluoroquinolones

Density functional theory （DFT） was used to calculate molecular descriptors （properties） for 12 fluoro-quinolone with anti-S.pneumoniae activity. Principal component analysis （PCA） and hierarchical cluster analysis （HCA） were employed to reduce dimensionality and investigate in which variables should be more effective for classifying fluoroquinolones according to their degree of an-S.pneumoniae activity. The PCA results showed that the variables ELUMO, Q3, Q5, QA, logP, MR, VOL and △EHL of these compounds were responsible for the anti-S.pneumoniae activity. The HCA results were similar to those obtained with PCA.The methodologies of PCA and HCA provide a reliable rule for classifying new fluoroquinolones with antiS.pneumoniae activity. By using the chemometric results, 6 synthetic compounds were analyzed through the PCA and HCA and two of them are proposed as active molecules with anti-S.pneumoniae, which is consistent with the results of clinic experiments.

Determination of local constitutive behavior and simulation on tensile test of 2219-T87 aluminum alloy GTAW joints

The local and global mechanical responses of gas tungsten arc welds（GTAW） of a 2219-T87 aluminum alloy were investigated with experiment and numerical simulation.Digital image correlation（DIC） was used to access the local strain fields in transversely loaded welds and to determine the local stress-strain curves of various regions in the joint.The results show that the DIC method is efficient to acquire the local stress-strain curves but the curves of harder regions are incomplete because the stress and strain ranges are limited by the weakest region.With appropriate extrapolation,the complete local stress-strain curves were acquired and proved to be effective to predict the tensile behavior of the welded joint.During the tensile process,the fracture initiates from the weld toes owing to their plastic strain concentrations and then propagates along the fusion line,finally propagates into the partially melted zone（PMZ）.

Studies on the Synthesis, Anticonvulsant Activity, and the Structure-Activity Relationships of Phenyl Pyridazinones and their GABA Derivatives

In searching for effective anticonvulsant agents,fourteen 6-aryl-4.5-di- hydro-3(2H)pyridazinones.fifteen 6-aryl-3(2H)pyridazinones,and seventeen 3-GABA derivatives of 6-aryIpyridazines have been synthesized,and evaluated in mice for the ability to antagonize maximal electroshock seizure(MES).The ED_(50) values showed that 6-(2′,4′- dichlorophenyt)-3(2H)pyridazinone was the most potent anticonvulsant among these corn- pounds(ED_(50)=10.15 mg/kg).The structure-activity relationships of the aryl pyridazinones were studied.The result showed that:(1)the higher the value of the hydrophobic parameter л of the substituent on the phenyl ring.the more potent the anticonvulsant activity of the corn- pound.and(2)only the compounds with an electron withdrawing substituent on the phenyl ring exhibited appreciable anticonvulsant activity.

Toxicity of Selected Imidazolium-based Ionic Liquids on Caenorhabditis elegans： a Quantitative Structure-Activity Relationship Study

Due to the large number of ionic liquids （ILs） and their potential environmental risk, assessing the toxicity of ILs by ecotoxicological experiment only is insufficient. Quantitative structure- activity relationship （QSAR） has been proven to be a quick and effective method to estimate the viscosity, melting points, and even toxicity of ILs. In this work, the LC50 values of 30 imidazolium-based ILs were determined with Caenorhabditis elegans as a model animal. Four suitable molecular descriptors were selected on the basis of genetic function approximation algorithm to construct a QSAR model with an R^2 value of 0.938. The predicted lgLC50 in this work are in agreement with the experimental values, indicating that the model has good stability and predictive ability. Our study provides a valuable model to predict the potential toxicity of ILs with different sub-structures to the environment and human health.

Structure-Property Relationships and Models of Controlled Drug Delivery of Biodegradable Poly (D, L-lactic acid) Microspheres

An oil-in-water (O/W) solvent evaporation method was used to prepare biodegradable microspheresbased on poly(D,L-lactic acid) (PLA). Nifedipine, a hydrophobic drug, was chosen as a model molecule in the studyof drug entrapment and release. Effect of preparation conditions on the size, morphology, drug loading, and releaseprofiles of micropheres was investigated. Based on in vitro release experimental findings, a diffusion/dissolutionmodel was presented for quantitative description of the resulting release behaviors and drug release kinetics fromPLA microspheres analyzed. The mathematical models were used to predict the effect of microstructure on theresulting drug release. It provided an approach to determine the suitable structure parameters for microspheres toachieve desired drug release behaviors.

Structure-activity relationships of oxime compounds as flotation collectors by DFT calculations

The relationships between the structure of oxime compounds(R^(1)R^(2)C=NOH,R^(1)/R^(2)=alkyl groups) with different substituents and their corresponding flotation performances were studied. The analyses of density functional theory(DFT) calculations illustrated that the introduced phenyl group at the R^(1) position could enhance the acidity,while the heptyl group could effectively increase the hydrophobicity and benefit van der Waals interactions. Meanwhile,the introduced amino group at the R^(2) position could provide cationic sites to interact with negatively charged surfaces of minerals, while the introduced hydroxyl group could provide additional action sites to form stable chelates with metal ions. Based on the structure-activity relationships, structural optimization was carried out to obtain three efficient collectors, which possessed superior flotation separation performances, proving the effectiveness of the structural modification to oxime compounds in this work.

Theoretical Investigation on QSAR of(2-Methyl-3-biphenylyl)methanol Analogs as PD-L1 Inhibitor

Cancer is one of the most serious issues in human life.Blocking programmed cell death protein 1 and programmed death ligand-1(PD-L1)pathway is one of the great innovations in the last few years,a few numbers of inhibitors can be able to block it.(2-Methyl-3-biphenylyl)methanol derivative is one of them.Here,the quantitative structure-activity relationship(QSAR)established twenty(2-methyl-3-biphenylyl)methanol derivatives as the programmed death ligand-1 inhibitors.Density functional theory at the B3LPY/6-31+G(d,p)level was employed to study the chemical structure and properties of the chosen compounds.Highest occupied molecular orbital energy EHOMO,lowest unoccupied molecular orbital energy ELUMO,total energy ET,dipole moment DM,absolute hardnessη,absolute electronegativityχ,softness S,electrophilicityω,energy gap?E,etc.,were observed and determined.Principal component analysis(PCA),multiple linear regression(MLR)and multiple nonlinear regression(MNLR)analysis were carried out to establish the QSAR.The proposed quantitative models and interpreted outcomes of the compounds were based on statistical analysis.Statistical results of MLR and MNLR exhibited the coefficient R^2 was 0.661 and 0.758,respectively.Leave-one-out cross-validation,r_m^2 metric,r_m^2 test,and"Golbraikh&Tropsha’s criteria"analyses were applied for the validation of MLR and MNLR,which indicate two models are statistically significant and well stable with data variation in the external validation towards PD-L1.The obtained results showed that the MNLR model predicts the bioactivity more accurately than MLR,and it may be helpful and supporting for evaluation of the biological activity of PD-L1 inhibitors.

Structural features of substituted triazole-linked chalcone derivatives as antimalarial activities against D_(10) strains of Plasmodium falciparum: A QSAR approach

A quantitative structure–activity relationship(QSAR) was performed to analyze antimalarial activities against the D10 strains of Plasmodium falciparum of triazole-linked chalcone and dienone hybrid derivatives using partial least squares regression coupled with stepwise forward–backward variable selection method. QSAR analyses were performed on the available IC50 D10 strains of Plasmodium falciparum data based on theoretical molecular descriptors. The QSAR model developed gave good predictive correlation coefficient(r2) of 0.8994, significant cross validated correlation coefficient(q2) of 0.7689, r2 for external test set)(2predr of 0.8256, coefficient of correlation of predicted data set)(2sepred,r of 0.3276. The model shows that antimalarial activity is greatly affected by donor and electron-withdrawing substituents. The study implicates that chalcone and dienone rings should have strong donor and electron-withdrawing substituents as they increase the activity of chalcone. Results show that the predictive ability of the model is satisfactory, and it can be used for designing similar group of antimalarial compounds. The findings derived from this analysis along with other molecular modeling studies will be helpful in designing of the new potent antimalarial activity of clinical utility.

Restructuring of well-defined Pt-based electrode surfaces under mild electrochemical conditions

Since the 1980s,single-crystal Pt electrodes with well-defined surface structures have been deemed stable under mild electrochemical conditions(e.g.,in the potential region of electric double layers,underpotential deposition of hydrogen,or mild hydrogen evolution/OH adsorption)and have served as model electrodes for unraveling the structure-performance relation in electrocatalysis.With the advancement of in situ electrochemical microscopy/spectroscopy techniques,subtle surface restructuring under mild electrochemical conditions has been achieved in the last decade.Surface restructuring can considerably modify electrocatalytic properties by generating/destroying highly active sites,thereby interfering with the deduction of the structure-performance relation.In this review,we summarize recent progress in the restructuring of well-defined Pt(-based)electrode surfaces under mild electrochemical conditions.The importance of the meticulous structural characterization of Pt electrodes before,during,and after electrochemical measurements is demonstrated using CO adsorption/oxidation,hydrogen adsorption/evolution,and oxygen reduction as examples.The implications of present findings for correctly identifying the reaction mechanisms and kinetics of other electrocatalytic systems are also briefly discussed.

Notes on Quantitative Structure-Properties Relationships （QSPR） Part Four： Quantum Multimolecular Polyhedra, Collective Vectors, Quantum Similarity, and Quantum QSPR Fundamental Equation

The nature and origin of a fundamental quantum QSPR （QQSPR） equation are discussed. In principle, as any molecular structure can be associated to quantum mechanical density functions （DF）, a molecular set can be reconstructed as a quantum multimolecular polyhedron （QMP）, whose vertices are formed by each molecular DF. According to QQSPR theory, complicated kinds of molecular properties, like biological activity or toxicity, of molecular sets can be calculated via the quantum expectation value of an approximate Hermitian operator, which can be evaluated with the geometrical information contained in the attached QMP via quantum similarity matrices. Practical ways of solving the QQSPR problem from the point of view of QMP geometrical structure are provided. Such a development results into a powerful algorithm, which can be implemented within molecular design as an alternative to the current classical QSPR procedures.

Structure-Activity Relationships in the Chelation Activity by Derivatives of 1,2-Dithiole-3-Thiones

The structure and electronic properties of a series of biologically active dithiolethiones （1） have been calculated using semi-empirical. Multi-linear regression analysis suggests that there is a reasonable correlation between the experimental activity of the derivatives against chelation activity and calculated properties such as the HOMO energies, molar refractivity, dipole moments and experimental partition coefficient. From the derived QSAR equations the 3-Methylthio-4p-Tolyle-1,2-Dithiolylium accompanying ion （CH3SO4） and 4-para-tolyl-1,2-dithiole-3-thione （2b and 2） are predicted to show the highest activity against chelation activity, while 3-Methylthio-5p-methoxy phenyl-1,2-Dithiolylium accompanying ion （I-） （3a） is predicted to be the least active in line with the experimental results.

Estimation of half-wave potential of anabolic androgenic steroids by means of QSER Approach

The quantitative structure-property relationship(QSPR) of anabolic androgenic steroids was studied on the half-wave reduction potential(E1/2) using quantum and physico-chemical molecular descriptors. The descriptors were calculated by semi-empirical calculations. Models were established using partial least square(PLS) regression and back-propagation artificial neural network(BP-ANN). The QSPR results indicate that the descriptors of these derivatives have significant relationship with half-wave reduction potential. The stability and prediction ability of these models were validated using leave-one-out cross-validation and external test set.

Quantitative structure-activity relationship of 2-alkyl-4-(biphenylylmethoxy) pyridine derivatives with AT1 receptor antagonistic activity

The quantitative structure-activity relationship(QSAR) of 2-alkyl-4-(biphenylylmethoxy) pyridine derivatives was studied.Three different alignment methods were used to get the models of the comparative molecular field analysis(CoMFA),the comparative molecular similarity indices analysis(CoMSIA),and the hologram quantitative structure?activity relationship(HQSAR).The statistical results from the established models show believable predictivity based on the cross-validated value(q2>0.5) and the non-validated value(r2>0.9),The analysis on contour maps of CoMFA and CoMSIA models suggests that hydrophobic and hydrogen-bond acceptor fields are important factors that affect the AT1 antagonistic activity of 2-alkyl-4-(biphenylylmethoxy) pyridine derivatives besides the steric and electrostatic fields,The structural modification information from different atom contributions in the HQSAR model is in agreement with that in the 3D-QSAR models.

Self-Similar Characteristic for the Ramp Structures of Wind Speed

Time series of wind speed are composed of large and small ramp structures. Data analysis reveals a power law relation between the linear slope of ramp structures and the time scale. This suggests that these ramp structures of wind speed have a self-similar characteristic. The lower limit of the self-similar scale range was 2 s. The upper limit is unexpectedly large at 27 rain. Data are collected from grassland, city, and lake areas. Although these data have different underlying surfaces, all of them clearly show a power law relation, with slight differences in their power exponents.

Crystallographic Parameters and Band Gap of CdSxSe1-x Mixed Crystals

Crystals of CdSxSe1-x alloys have been grown from the vapour phase. Some of the physical properties, such as lattice parameters, crystal structure and x-rays data of CdSxSe1-x alloys were determined using x-ray diffractometry. X-ray diffractometry has shown that CdS-CdSe mixed crystals had the wurtzite structure for all compositions between CdS and CdSe. The lattice parameters （both a and c） were found to show a linear dependence with composition. The dependence of the lattice parameters of a and c on composition can be expressed as： a（x） = 4.165 ＋ 0.16x; c（x） = 6.713 ＋ 0.27x. The variation of band gap with composition was determined for these samples from optical absorption measurements, which showed that the band gap varied smoothly and monotonically, but not linearly over the composition range typical results were found between 2.42-1.74 eV at room temperature.

3D-QSAR and action mechanism of potential dual inhibitors towards AP-1 and NF-κB

Three-dimensional quantitative structure-activity relationship （3D-QSAR） and docking studies of a series of novel dioxopyrrolinyl-amino-pyrimidine derivatives, which are potential dual inhibitors mediating a transcriptional activation towards protein-1 （AP-1） and nuclear factor kappa B （NF-κB）, have been carried out. The QS, AR models established by comparative molecular field analysis （CoMFA） and comparative molecular similarity index analysis （CoMSIA） show a good predictive ability with cross-validated coefficients q2 of 0.644 and 0.636, respectively. The docking result shows that there are quite lower average values of the flexible and rigid energy scores on the selected binding sites, meanwhile, it further shows that the binding sites just fall on the joint regions between AP-1 （and NF-κB） and DNA. The reason that these analogues have inhibition function towards AP-I and NF-κB is that their existence on these joint regions can effectively prevent free AP-I and NF-κB from binding to DNA. These results can offer a valuable theoretical reference to the pharmaceutical molecular design as well as the action mechanism analysis.