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环状RNA计算预测方法的研究进展
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作者 谭超俊 顾万君 谢雪英 《生物信息学》 2021年第2期75-84,共10页
环状RNA(circular RNA,circRNA)是一类具有重要生物作用的内源性RNA,大多在可变剪接过程中通过5’端和3’端反向共价连接形成闭合环状结构。目前,环状RNA的识别策略主要分为两大类:一类方法从高通量测序(RNA-seq)数据中检测反向剪接位点... 环状RNA(circular RNA,circRNA)是一类具有重要生物作用的内源性RNA,大多在可变剪接过程中通过5’端和3’端反向共价连接形成闭合环状结构。目前,环状RNA的识别策略主要分为两大类:一类方法从高通量测序(RNA-seq)数据中检测反向剪接位点,另一类直接从RNA序列中检测成环特征。由于数据本身和识别方法的不足,依赖高通量测序数据的识别工具存在假阳性率高和不同工具间重合率低等缺点。因此,充分利用序列本身的特征来识别环状RNA是环状RNA识别的研究方向。本文总结了8种基于序列特征预测环状RNA的工具,并给出它们在测试数据集上的测试结果,为后续研究和优化提供数据支持。 展开更多
关键词 环状RNA 成环预测 深度学习
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Assessment of total suspended sediment concentrations in Poyang Lake using HJ-1A/1B CCD imagery 被引量:8
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作者 于之锋 陈晓玲 +3 位作者 周斌 田礼乔 袁小红 冯炼 《Chinese Journal of Oceanology and Limnology》 SCIE CAS CSCD 2012年第2期295-304,共10页
We explored the potential of the environment and disaster monitoring and forecasting small satellite constellations (HJ-1A/1B satellites) charge-coupled device (CCD) imagery (spatial resolution of 30 m, revisit time o... We explored the potential of the environment and disaster monitoring and forecasting small satellite constellations (HJ-1A/1B satellites) charge-coupled device (CCD) imagery (spatial resolution of 30 m, revisit time of 2 days) in the monitoring of total suspended sediment (TSS) concentrations in dynamic water bodies using Poyang Lake, the largest freshwater lake in China, as an example. Field surveys conducted during October 17-26, 2009 showed a wide range of TSS concentration (3-524 mg/L). Atmospheric correction was implemented using the Fast Line-of-sight Atmospheric Analysis of Spectral Hypercubes (FLAASH) module in ENVI with the aid of aerosol information retrieved from concurrent Terra/Moderate Resolution Imaging Spectroradiometer (MODIS) surveys, which worked well at the CCD bands with relatively high reflectance. A practical exponential retrieval algorithm was created between satellite remote sensing reflectance and in-situ measured TSS concentration. The retrieved results for the whole water area matched the in-situ data well at most stations. The retrieval errors may be related to the problem of scale matching and mixed pixel. In three selected subregions of Poyang Lake, the distribution trend of retrieved TSS was consistent with that of the field investigation. It was shown that HJ-1A/1B CCD imagery can be used to estimate TSS concentrations in Poyang Lake over synoptic scales after applying an appropriate atmospheric correction method and retrieval algorithm. 展开更多
关键词 total suspended sediment HJ-1A/1B CCD atmospheric correction retrieval algorithm Poyang Lake
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