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高通量测序DNA文库定量质控技术研究 被引量:3
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作者 王霞 欧阳艳艳 +2 位作者 王晶 王尚君 董莲华 《计量学报》 CSCD 北大核心 2020年第10期1308-1312,共5页
DNA文库定量的准确与否直接影响测序数据质量的好坏,因此,开展文库定量质控技术研究非常重要。针对Illumina高通量测序平台的DNA文库定量,建立了基于SYBR Green荧光染料嵌合的高特异性数字PCR绝对定量方法,用于DNA文库定量标准物质的定... DNA文库定量的准确与否直接影响测序数据质量的好坏,因此,开展文库定量质控技术研究非常重要。针对Illumina高通量测序平台的DNA文库定量,建立了基于SYBR Green荧光染料嵌合的高特异性数字PCR绝对定量方法,用于DNA文库定量标准物质的定值;并对制备的文库定量标准物质的适用性进行了验证。结果表明制备的5个水平的文库定量标准物质线性良好,可以作为Illumina平台DNA文库定量的标准曲线。 展开更多
关键词 计量学 高通量测序 文库定量 基因测序 质量控制 标准物质 数字PCR
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Construction and quality identification of T7 recombination expression cDNA library form human lung cancer
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作者 Wentao Yue Zitong Wang +1 位作者 Yue Wang Lina Zhang 《The Chinese-German Journal of Clinical Oncology》 CAS 2009年第4期195-198,共4页
Objective:Currently,only a limited numbers of tumor markers for non small lung cancer(NSCLC) diagnosis,new biomarker,such as serum autoantibodies may improve the early detection of lung cancer.Our objective is constru... Objective:Currently,only a limited numbers of tumor markers for non small lung cancer(NSCLC) diagnosis,new biomarker,such as serum autoantibodies may improve the early detection of lung cancer.Our objective is construction human lung squamous carcinoma and adenocarcinoma T7 phage display cDNA library from the tissues of NSCLC patients.Methods:mRNA was isolated from a pool of total RNA extract from NSCLC tissues obtained from 5 adenocarcinomas and 5 squamous carcinomas,and then mRNA was reverse transcribed into double stranded cDNA.After digestion,the cDNA was inserted into T7Select 10-3 vector.The phage display cDNA library was constructed by package reaction in vitro and plate proliferation.Plaque assay and PCR were used to evaluate the library.Results:Two T7 phage display cDNA library were established.Plaque assay show the titer of lung squamas carcinoma library was 1.8 × 106 pfu,and the adenocarcinoma library was 5 × 106 pfu.The phage titer of the amplified library were 3.2 × 1010 pfu/mL and 2.5 × 1010 pfu/mL.PCR amplifica-tion of random plaque show insert ratio were 100%(24/24) in adenocarcinoma library and 95.8% in human lung squamas carcinoma library(23/24).Insert range from 300 bp to 1 500 bp.Conclusion:Two phage display cDNA library from NSCLC were constructed. 展开更多
关键词 phage display cDNA library lung neoplasms
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