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基于高通量测序数据的插入/删除新突变检测方法
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作者 邢文昊 刘永壮 王亚东 《智能计算机与应用》 2020年第1期257-261,共5页
插入/删除新突变是一种重要的新突变形式,与多种人类疾病的发生密切相关。随着高通量测序技术的迅猛发展,基于高通量测序数据进行插入/删除新突变检测已成为常规手段,但由于测序错误以及reads比对错误的影响,已有的检测方法通常存在错... 插入/删除新突变是一种重要的新突变形式,与多种人类疾病的发生密切相关。随着高通量测序技术的迅猛发展,基于高通量测序数据进行插入/删除新突变检测已成为常规手段,但由于测序错误以及reads比对错误的影响,已有的检测方法通常存在错误率较高的问题。本文提出一种基于Adaboost的插入/删除新突变检测方法,旨在对常用的新突变检测方法产生的插入/删除新突变检测结果进行过滤,在确保基本不损失敏感度的前提下,显著降低错误发现率。 展开更多
关键词 高通量测序数据 新突变检测 ADABOOST
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New mutation detection system of repackaged λ gt11 DNA containing LacZ gene
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作者 刘勇 曹佳 +4 位作者 吴涛 杨录军 孙华明 杨明杰 钱频 《Journal of Medical Colleges of PLA(China)》 CAS 2002年第3期162-166,共5页
Objective: To establish a reformative detection system which has sound ability of providing information on molecular mutagenesis spectrum and the specificity of detection system of repackaged λ phage. Methods: LacZ g... Objective: To establish a reformative detection system which has sound ability of providing information on molecular mutagenesis spectrum and the specificity of detection system of repackaged λ phage. Methods: LacZ gene, as mutational target gene and reporter gene, was applied into the detection system. The λ gt11 DNA treated with ENU (1-ethyl-1-nitrosourea) and 9-AA (9-aminoacridine) was repackaged in vitro. The packaged λ phage was then grown in E. coli Y1090 on a selective plate containing X-gel and IPTG. The survival and mutation frequencies were determined by counting the clear-plaque and blue-plaque, and the molecular mutation mechanism was studied by extracting and sequencing the LacZ gene of mutants. Results: The survival of repackaged λ phages treated with 9-AA and ENU apparently decreased in consistent dose-dependence. The mutation frequency of clear-plaque mutants showed a linear dose-related increase. The predominant mutations induced by 9-AA were ± 1 frameshift mutation, and 9-AA induced - 1 frameshift was much more effective than induced +1 frameshift. 9-AA also induced substitutions with transversions more common. ENU-induced mutations were chiefly occurred at G: C sites. Substitutions induced by ENU were mainly G: C→A: T, G: C→C: G and A: T→T: A transversion. Conclusion: Mutation detection system of λgt11 DNA containing LacZ gene is proven better than that of λDNA without LacZ gene. The combination of survival, mutant frequency and sequence spectrum can not only increase the sensitivity and specificity of the new method, but also provide a better understanding of the molecular mechanism of mutation for ultimate extrapolation to risk assessment. 展开更多
关键词 MUTATION λgt11 DNA LacZ gene 9-aminoacridine 1-ethyl-1-nitrosourea
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