The structure and diversity of the bacterial communities in rhizosphere soils of native Phragmites australis and Scirpus rnariqueter and alien Spartina alterniflora in the Yangtze River Estuary were investigated by co...The structure and diversity of the bacterial communities in rhizosphere soils of native Phragmites australis and Scirpus rnariqueter and alien Spartina alterniflora in the Yangtze River Estuary were investigated by constructing 16S ribosomal DNA (rDNA) clone libraries. The bacterial diversity was quantified by placing the clones into operational taxonomic unit (OTU) groups at the level of sequence similarity of 〉 97%. Phylogenetic analysis of the resulting 398 clone sequences indicated a high diversity of bacteria in the rhizosphere soils of these plants. The members of Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, and Deltaproteobacteria of the phylum Proteobacteria were the most abundant in rhizobacteria. Chao 1 nonpaxametric diversity estimator coupled with the reciprocal of Simpson's index (l/D) was applied to sequence data obtained from each library to evaluate total sequence diversity and quantitatively compare the level of dominance. The results showed that Phragmites, Scirpus, and Spartina rhizosphere soils contained 200, 668, and 382 OTUs, respectively. The bacterial communities in the Spartina and Phragraites rhizosphere soils displayed species dominance revealed by 1/D, whereas the bacterial community in Scirpus rhizosphere soil had uniform distributions of species abundance. Overall, analysis of 16S rDNA clone libraries from the rhizosphere soils indicates that the changes in bacterial composition may occur concomitantly with the shift of species composition in plant communities.展开更多
The root development of Actinidia chinensis planUets was studied in exposure to environmental stress of mechanical vibration at respectively 1 Hz, 2 Hz, 3 Hz, 4 Hz and 5 Hz. The plantlets exposed to vibration stimuli ...The root development of Actinidia chinensis planUets was studied in exposure to environmental stress of mechanical vibration at respectively 1 Hz, 2 Hz, 3 Hz, 4 Hz and 5 Hz. The plantlets exposed to vibration stimuli at all those frequencies have a larger total number and a larger total length of roots and a smaller permeability of root plasma-membrane, compared with those cultivated in an environment without vibration stress. Vibration at respectively 1 Hz, 2 Hz, 3 Hz and 4 Hz enhances root activity and the 3 Hz vibration is the most favorable. There is an obvious negative correlation between root activity and permeability of root plasma-membrane. The effects may be explained by the likelihood that mechanical Vibration at an appropriate frequency facilitates roots' absorbing water and minerals which are indispensable to inducing and synthesizing in roots some active substances favorable to growth. Nevertheless, overstress damages the integrity of root plasm-membrane, increases the permeability, and results in the disability of protecting root cells.展开更多
Phosphate solubilizing bacteria isolated from rhizosphere of coffee plants may play an important role in improving phosphate availability for the plants. However, one of the factors influencing the degree of phosphate...Phosphate solubilizing bacteria isolated from rhizosphere of coffee plants may play an important role in improving phosphate availability for the plants. However, one of the factors influencing the degree of phosphate solubilization by these bacteria is the ability of the microorganisms to utilize phosphate. The objective of this study was to determine the ability of phosphate solubilizing bacteria isolated from coffee plant rhizosphere and their effects on robusta coffee seedling growth. This research was carried out by taking soil samples from Andungsari (Bondowoso District) and Kaliwining (Jember District) coffee plantations, both located in East Java. Liquid medium of Pikovskaya was used for isolation of phosphate solubilizing bacteria from the soil samples. Results of this study showed that 12 phosphate solubilizing bacteria were obtained from this isolation, eight isolates from Andungsari and four isolates from Kaliwining. Selection of those bacteria isolates was based on the qualitative ability in phosphate solubilizing by measuring the clear zone surrounding the colonies and quantitatively by measuring the solubilized phosphate using spectrophotometer. The results showed that four isolates, in the order of PFpKW1, PFpC61, PFsC62a, and PFsB 11, had the highest qualitative ability in solubilizing phosphate, while for the highest quantitative ability the order was PFpKW 1, PFpC61, PFsC62a, and PFsB 11. In a green house study, inoculation of these selected isolates onto Robusta coffee seedlings positively enhanced the coffee seedling growth. Phenotypic test indicated that the four isolates are similar to the genus of Pseudomonas.展开更多
Phytoremediation is one of method which can be applied to remediate the contaminated environment. In most cases, microorganisms bacteria and fungi, living in the rhizosphere closely associated with plants, may contrib...Phytoremediation is one of method which can be applied to remediate the contaminated environment. In most cases, microorganisms bacteria and fungi, living in the rhizosphere closely associated with plants, may contribute to mobilize metal ions by increasing the bioavailable fraction. Some studies have evidenced that heavy metal-resistant bacteria can enhance metal uptake by hyperaccumulator plants. Lead-resistant bacteria which could help to increase the lead uptake by Scirpus grossus was isolated and screened. The samples were taken from plant roots after being exposed in a range finding test by spiking analytical grade of Pb(NO3)2 solution in variation of Pb concentrations. The results of rhizobacteria isolation showed that there were several colonies having resistance to grow and survive in contaminated environment even the host plant had withered. Only a few of rhizobacteria colonies were affected by high concentrations of lead exposure during screening test. The screening test was conducted by growing the isolated colonies on plates containing tryptic soy agar (TSA) medium containing of 200, 400 and 600 mg/L Pb solution including the plate with only TSA media without any lead exposure acting as a control medium, and incubating them at 30℃ for 72 hours. Isolation of bacteria from rhizosphere had found 47 colonies including several colonies from the withered plants. These all 47 colonies then become 28 after characterization by using color and colony morphology, followed by Gram stain, catalase, oxidase and motility test. The screening test of lead resistant bacteria colonies resulted 3 groups which is scored high, medium and low. The screened colonies will then be used for further study.展开更多
Plants have diverse strategies to cope with phosphorus (P) deficiency. To better understand how maize responds to P deficiency, a field experiment with two P levels, 0 and 100 kg P205 ha-1 (P0 and P100, respectivel...Plants have diverse strategies to cope with phosphorus (P) deficiency. To better understand how maize responds to P deficiency, a field experiment with two P levels, 0 and 100 kg P205 ha-1 (P0 and P100, respectively), was carried out as a part of a long-term Pfertilizer field trial. Plant and soil analyses showed that P-deficient maize reduced its growth rate, increased P use efficiency, and formed more thin roots with the diameter less than 0.6 mm at jointing and silking stages, compared to the plants treated with P100. Further, there were no differences in major inorganic P fractions (Ca2-P, Cas-P, Al-P, Fe-P, occluded P and Ca10-P) between the rhizospheric and bulk soils at each harvest, even when soil Olsen-P was only 1.38 mg kg-1. These results suggested that maize responded to P deficiency by reducing the internal P demand for growth and increasing P acquisition ability by favorable root morphological alteration at low carbon cost.展开更多
Application of plant growth-promoting rhizobacteria (PGPR) has been shown to increase legume growth and development under field and controlled environmental conditions. The present study was conducted to isolate pla...Application of plant growth-promoting rhizobacteria (PGPR) has been shown to increase legume growth and development under field and controlled environmental conditions. The present study was conducted to isolate plant growth-promoting rhizobacteria (PGPR) from the root nodules of lentil (Lens culinaris Medik.) grown in arid/semi-arid region of Punjab, Pakistan and examined their plant growth-promoting abilities. Five bacterial isolates were isolated, screened in vitro for plant growth-promoting (PGP) characteristics and their effects on the growth of lentil were assessed under in vitro, hydroponic and greenhouse (pot experiment) conditions. All the isolates were Gram negative, rod-shaped and circular in form and exhibited the plant growth-promoting attributes of phosphate solubilization and auxin (indole acetic acid, IAA) production. The IAA production capacity ranged in 0.5-11.0μg mL-1 and P solubilization ranged in 3-16 mg L-1. When tested for their effects on plant growth, the isolated strains had a stimulatory effect on growth, nodulation and nitrogen (N) and phosphorus (P) uptake in plants on nutrient-deficient soil. In the greenhouse pot experiment, application of PGPR significantly increased shoot length, fresh weight and dry weight by 65%, 43% and 63% and the increases in root length, fresh weight and dry weight were 74%, 54% and 92%, respectively, as compared with the uninoculated control. The relative increases in growth characteristics under in vitro and hydroponic conditions were even higher. PGPR also increased the number of pods per plant, 1 000-grain weight, dry matter yield and grain yield by 50%, 13%, 2870 and 29%, respectively, over the control. The number of nodules and nodule dry mass increased by 170% and 136%, respectively. After inoculation with effective bacterial strains, the shoot, root and seed N and P contents increased, thereby increasing both N and P uptake in plants. The root elongation showed a positive correlation (R2 = 0.67) with the IAA production and seed yield exhibited a positive correlation (R2 = 0.82) with root nodulation. These indicated that the isolated PGPR rhizobial strains can be best utilized as potential agents or biofertilizers for stimulating the growth and nutrient accumulation of lentil.展开更多
Nitrogen is an essential macronutrient in plant growth and development. Ammonium is one of the major inorganic nitrogen forms for root uptake. The homeostasis of ammonium in the plant cell is under tight control to pr...Nitrogen is an essential macronutrient in plant growth and development. Ammonium is one of the major inorganic nitrogen forms for root uptake. The homeostasis of ammonium in the plant cell is under tight control to prevent ammonium toxicity when in excess. In the ammonium sig- naling pathway, internal and external ammonium can be de- tected by specific sensors, which in turn triggers a series of proper plant ammonium responses including transcription regulation and phosphorylation. Ammonium absorption is mainly mediated by the root-located ammonium transporters, which are key regulators in the nitrogen signaling pathway. Many researchers have attempted to unravel the mechanisms of ammonium uptake by the transporters. Fine-tuned modulation of ammonium homeostasis is necessary to main- tain an appropriate level of ammonium in the cytoplasm, which is a balance of ammonium efflux, assimilation and compartmentation. Recently, there has been important pro- gress in revealing the ammonium sensing and signaling mechanisms. In this review, we focus on the homeostatic regulation and signaling of cytosolic ammonium.展开更多
In spite of a large number of studies of the interaction of the cytotoxic plant alkaloid sanguinarine(SAN) with nucleic acids,the anticancer mechanism of SAN is still not clear.In contrast to the large number of studi...In spite of a large number of studies of the interaction of the cytotoxic plant alkaloid sanguinarine(SAN) with nucleic acids,the anticancer mechanism of SAN is still not clear.In contrast to the large number of studies of the interaction mechanism of SAN with DNA,there have been relatively few studies of the interaction of SAN with nucleosides.In this work,the interaction of SAN with three nucleosides-thymidine(T),uridine(U),and adenosine(A)-was investigated using a combination of conventional fluorescence and UV-vis spectroscopic techniques;thermodynamic calculations were also carried out at physiological pH 7.2.The binding processes of SAN with the different nucleosides were characterized by hypochromic and bathochromic effects in the absorption spectra of SAN and by the quenching of the fluorescence intensity of SAN.The measurements of fluorescence lifetime,the variations of the absorption spectra of the fluorophore,and the dependence of the quenching on the temperature indicated that the fluorescence quenching is static.The Stern-Volmer plot is nonlinear and approximately quadratic showing that,in this process,one SAN molecule can bind with two nucleoside molecules.These studies,together with our earlier studies of the binding of SAN with cytidine(C) and guanosine(G),showed that the binding constants of SAN with the five nucleosides at T = 308.15,318.15,and 328.15 K decreased in the order C > G > T > U > A and at T = 298.15 K decreased in the order G > C > T > U > A,and that the binding of SAN with the various nucleosides is not only slightly exothermic but also entropy-driven.All these results together with fluorescence quenching experiments advance good evidence concerning the interaction of SAN with various nucleosides.Such studies of the interaction mechanism of alkaloids with DNA may promote the development of new drugs.展开更多
基金Project supported by the National Natural Science Foundation of China (Nos.30370235 and 30670330)Science and Technology Commission of Shanghai (No.04DZ19304)Ministry of Education of China (No.105063)
文摘The structure and diversity of the bacterial communities in rhizosphere soils of native Phragmites australis and Scirpus rnariqueter and alien Spartina alterniflora in the Yangtze River Estuary were investigated by constructing 16S ribosomal DNA (rDNA) clone libraries. The bacterial diversity was quantified by placing the clones into operational taxonomic unit (OTU) groups at the level of sequence similarity of 〉 97%. Phylogenetic analysis of the resulting 398 clone sequences indicated a high diversity of bacteria in the rhizosphere soils of these plants. The members of Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, and Deltaproteobacteria of the phylum Proteobacteria were the most abundant in rhizobacteria. Chao 1 nonpaxametric diversity estimator coupled with the reciprocal of Simpson's index (l/D) was applied to sequence data obtained from each library to evaluate total sequence diversity and quantitatively compare the level of dominance. The results showed that Phragmites, Scirpus, and Spartina rhizosphere soils contained 200, 668, and 382 OTUs, respectively. The bacterial communities in the Spartina and Phragraites rhizosphere soils displayed species dominance revealed by 1/D, whereas the bacterial community in Scirpus rhizosphere soil had uniform distributions of species abundance. Overall, analysis of 16S rDNA clone libraries from the rhizosphere soils indicates that the changes in bacterial composition may occur concomitantly with the shift of species composition in plant communities.
基金Funded by the Natural Science Foundation of China (No. 39770206).
文摘The root development of Actinidia chinensis planUets was studied in exposure to environmental stress of mechanical vibration at respectively 1 Hz, 2 Hz, 3 Hz, 4 Hz and 5 Hz. The plantlets exposed to vibration stimuli at all those frequencies have a larger total number and a larger total length of roots and a smaller permeability of root plasma-membrane, compared with those cultivated in an environment without vibration stress. Vibration at respectively 1 Hz, 2 Hz, 3 Hz and 4 Hz enhances root activity and the 3 Hz vibration is the most favorable. There is an obvious negative correlation between root activity and permeability of root plasma-membrane. The effects may be explained by the likelihood that mechanical Vibration at an appropriate frequency facilitates roots' absorbing water and minerals which are indispensable to inducing and synthesizing in roots some active substances favorable to growth. Nevertheless, overstress damages the integrity of root plasm-membrane, increases the permeability, and results in the disability of protecting root cells.
文摘Phosphate solubilizing bacteria isolated from rhizosphere of coffee plants may play an important role in improving phosphate availability for the plants. However, one of the factors influencing the degree of phosphate solubilization by these bacteria is the ability of the microorganisms to utilize phosphate. The objective of this study was to determine the ability of phosphate solubilizing bacteria isolated from coffee plant rhizosphere and their effects on robusta coffee seedling growth. This research was carried out by taking soil samples from Andungsari (Bondowoso District) and Kaliwining (Jember District) coffee plantations, both located in East Java. Liquid medium of Pikovskaya was used for isolation of phosphate solubilizing bacteria from the soil samples. Results of this study showed that 12 phosphate solubilizing bacteria were obtained from this isolation, eight isolates from Andungsari and four isolates from Kaliwining. Selection of those bacteria isolates was based on the qualitative ability in phosphate solubilizing by measuring the clear zone surrounding the colonies and quantitatively by measuring the solubilized phosphate using spectrophotometer. The results showed that four isolates, in the order of PFpKW1, PFpC61, PFsC62a, and PFsB 11, had the highest qualitative ability in solubilizing phosphate, while for the highest quantitative ability the order was PFpKW 1, PFpC61, PFsC62a, and PFsB 11. In a green house study, inoculation of these selected isolates onto Robusta coffee seedlings positively enhanced the coffee seedling growth. Phenotypic test indicated that the four isolates are similar to the genus of Pseudomonas.
文摘Phytoremediation is one of method which can be applied to remediate the contaminated environment. In most cases, microorganisms bacteria and fungi, living in the rhizosphere closely associated with plants, may contribute to mobilize metal ions by increasing the bioavailable fraction. Some studies have evidenced that heavy metal-resistant bacteria can enhance metal uptake by hyperaccumulator plants. Lead-resistant bacteria which could help to increase the lead uptake by Scirpus grossus was isolated and screened. The samples were taken from plant roots after being exposed in a range finding test by spiking analytical grade of Pb(NO3)2 solution in variation of Pb concentrations. The results of rhizobacteria isolation showed that there were several colonies having resistance to grow and survive in contaminated environment even the host plant had withered. Only a few of rhizobacteria colonies were affected by high concentrations of lead exposure during screening test. The screening test was conducted by growing the isolated colonies on plates containing tryptic soy agar (TSA) medium containing of 200, 400 and 600 mg/L Pb solution including the plate with only TSA media without any lead exposure acting as a control medium, and incubating them at 30℃ for 72 hours. Isolation of bacteria from rhizosphere had found 47 colonies including several colonies from the withered plants. These all 47 colonies then become 28 after characterization by using color and colony morphology, followed by Gram stain, catalase, oxidase and motility test. The screening test of lead resistant bacteria colonies resulted 3 groups which is scored high, medium and low. The screened colonies will then be used for further study.
基金Supported by the National Basic Research Program (973 Program) of China (No. 2013CB127402)the Fundamental Research Funds for the Central Universities, China (No. 2012YJ054)the Innovative Research Group Grant of the National Natural Science Foundation of China (No. 31121062)
文摘Plants have diverse strategies to cope with phosphorus (P) deficiency. To better understand how maize responds to P deficiency, a field experiment with two P levels, 0 and 100 kg P205 ha-1 (P0 and P100, respectively), was carried out as a part of a long-term Pfertilizer field trial. Plant and soil analyses showed that P-deficient maize reduced its growth rate, increased P use efficiency, and formed more thin roots with the diameter less than 0.6 mm at jointing and silking stages, compared to the plants treated with P100. Further, there were no differences in major inorganic P fractions (Ca2-P, Cas-P, Al-P, Fe-P, occluded P and Ca10-P) between the rhizospheric and bulk soils at each harvest, even when soil Olsen-P was only 1.38 mg kg-1. These results suggested that maize responded to P deficiency by reducing the internal P demand for growth and increasing P acquisition ability by favorable root morphological alteration at low carbon cost.
基金Supported by the University of Azad Jammu and Kashmir, Pakistan and the Pakistan Agriculture Research Council, Pakistan (No. ALP NR-27)
文摘Application of plant growth-promoting rhizobacteria (PGPR) has been shown to increase legume growth and development under field and controlled environmental conditions. The present study was conducted to isolate plant growth-promoting rhizobacteria (PGPR) from the root nodules of lentil (Lens culinaris Medik.) grown in arid/semi-arid region of Punjab, Pakistan and examined their plant growth-promoting abilities. Five bacterial isolates were isolated, screened in vitro for plant growth-promoting (PGP) characteristics and their effects on the growth of lentil were assessed under in vitro, hydroponic and greenhouse (pot experiment) conditions. All the isolates were Gram negative, rod-shaped and circular in form and exhibited the plant growth-promoting attributes of phosphate solubilization and auxin (indole acetic acid, IAA) production. The IAA production capacity ranged in 0.5-11.0μg mL-1 and P solubilization ranged in 3-16 mg L-1. When tested for their effects on plant growth, the isolated strains had a stimulatory effect on growth, nodulation and nitrogen (N) and phosphorus (P) uptake in plants on nutrient-deficient soil. In the greenhouse pot experiment, application of PGPR significantly increased shoot length, fresh weight and dry weight by 65%, 43% and 63% and the increases in root length, fresh weight and dry weight were 74%, 54% and 92%, respectively, as compared with the uninoculated control. The relative increases in growth characteristics under in vitro and hydroponic conditions were even higher. PGPR also increased the number of pods per plant, 1 000-grain weight, dry matter yield and grain yield by 50%, 13%, 2870 and 29%, respectively, over the control. The number of nodules and nodule dry mass increased by 170% and 136%, respectively. After inoculation with effective bacterial strains, the shoot, root and seed N and P contents increased, thereby increasing both N and P uptake in plants. The root elongation showed a positive correlation (R2 = 0.67) with the IAA production and seed yield exhibited a positive correlation (R2 = 0.82) with root nodulation. These indicated that the isolated PGPR rhizobial strains can be best utilized as potential agents or biofertilizers for stimulating the growth and nutrient accumulation of lentil.
基金supported by the National Key Basic Special Foundation of China(2012CB1143001)
文摘Nitrogen is an essential macronutrient in plant growth and development. Ammonium is one of the major inorganic nitrogen forms for root uptake. The homeostasis of ammonium in the plant cell is under tight control to prevent ammonium toxicity when in excess. In the ammonium sig- naling pathway, internal and external ammonium can be de- tected by specific sensors, which in turn triggers a series of proper plant ammonium responses including transcription regulation and phosphorylation. Ammonium absorption is mainly mediated by the root-located ammonium transporters, which are key regulators in the nitrogen signaling pathway. Many researchers have attempted to unravel the mechanisms of ammonium uptake by the transporters. Fine-tuned modulation of ammonium homeostasis is necessary to main- tain an appropriate level of ammonium in the cytoplasm, which is a balance of ammonium efflux, assimilation and compartmentation. Recently, there has been important pro- gress in revealing the ammonium sensing and signaling mechanisms. In this review, we focus on the homeostatic regulation and signaling of cytosolic ammonium.
文摘In spite of a large number of studies of the interaction of the cytotoxic plant alkaloid sanguinarine(SAN) with nucleic acids,the anticancer mechanism of SAN is still not clear.In contrast to the large number of studies of the interaction mechanism of SAN with DNA,there have been relatively few studies of the interaction of SAN with nucleosides.In this work,the interaction of SAN with three nucleosides-thymidine(T),uridine(U),and adenosine(A)-was investigated using a combination of conventional fluorescence and UV-vis spectroscopic techniques;thermodynamic calculations were also carried out at physiological pH 7.2.The binding processes of SAN with the different nucleosides were characterized by hypochromic and bathochromic effects in the absorption spectra of SAN and by the quenching of the fluorescence intensity of SAN.The measurements of fluorescence lifetime,the variations of the absorption spectra of the fluorophore,and the dependence of the quenching on the temperature indicated that the fluorescence quenching is static.The Stern-Volmer plot is nonlinear and approximately quadratic showing that,in this process,one SAN molecule can bind with two nucleoside molecules.These studies,together with our earlier studies of the binding of SAN with cytidine(C) and guanosine(G),showed that the binding constants of SAN with the five nucleosides at T = 308.15,318.15,and 328.15 K decreased in the order C > G > T > U > A and at T = 298.15 K decreased in the order G > C > T > U > A,and that the binding of SAN with the various nucleosides is not only slightly exothermic but also entropy-driven.All these results together with fluorescence quenching experiments advance good evidence concerning the interaction of SAN with various nucleosides.Such studies of the interaction mechanism of alkaloids with DNA may promote the development of new drugs.