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用BP神经网络基于氨基酸特性预测非同源蛋白质二级结构含量 被引量:1
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作者 秦红珊 杨新岐 《生物物理学报》 CAS CSCD 北大核心 2002年第4期467-473,共7页
依据蛋白质氨基酸特性,以氨基酸组成和有偏自协方差函数为特征矢量,用BP神经网络提出了一种预测非同源蛋白质中琢螺旋和茁折叠二级结构含量的计算方法。采用相互独立的非同源蛋白质数据库对该方法进行了检验。用Ponnuswamy值时,对二级... 依据蛋白质氨基酸特性,以氨基酸组成和有偏自协方差函数为特征矢量,用BP神经网络提出了一种预测非同源蛋白质中琢螺旋和茁折叠二级结构含量的计算方法。采用相互独立的非同源蛋白质数据库对该方法进行了检验。用Ponnuswamy值时,对二级结构琢螺旋和茁折叠含量的预测结果是:自检验平均绝对误差分别为0.069和0.065,相应标准偏差分别为0.044和0.047;他检验平均绝对误差分别为0.077和0.070,相应标准偏差分别为0.051和0.049。与仅以氨基酸组成为特征矢量的BP神经网络方法比较,相应的他检验平均绝对误差分别减小了0.024和0.016,标准偏差分别减小了0.031和0.018;与改进的多元线性回归方法比较,相应的他检验平均绝对误差分别减小了0.018和0.011,准偏差分别减小了0.020和0.012。表明: 基于氨基酸组成和有偏自协方差函数为特征矢量的BP神经网络预测蛋白质二级结构含量的方法可有效提高预测精度。 展开更多
关键词 BP神经网络 氨基酸组成 有偏自协方差函数 氨基酸特性 二级结构 含量
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不同莲子蛋白氨基酸结构与热特性研究 被引量:2
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作者 孙乾 郭增铮 +2 位作者 郑玮雯 吴钰涵 郭泽镔 《中国食物与营养》 2023年第2期45-51,共7页
目的:研究不同莲子蛋白(分离蛋白、清蛋白、球蛋白、醇溶蛋白、谷蛋白)的氨基酸组成结构与热特性的差异。结果:谷氨酸含量均占比最高,且含有较多带负电荷的极性氨基酸基团。莲子蛋白的E/T、E/N比值与FAO/WHO提出氨基酸比值接近,说明莲... 目的:研究不同莲子蛋白(分离蛋白、清蛋白、球蛋白、醇溶蛋白、谷蛋白)的氨基酸组成结构与热特性的差异。结果:谷氨酸含量均占比最高,且含有较多带负电荷的极性氨基酸基团。莲子蛋白的E/T、E/N比值与FAO/WHO提出氨基酸比值接近,说明莲子蛋白氨基酸组成与含量均衡。电子能谱中硫元素谱图显示,清蛋白具有更高的吸收峰值,表明其他蛋白中可能含有较多的二硫键,而巯基含量较少。热特性分析表明,莲子蛋白在90℃时逐渐变性,200℃后发生玻璃化转变,内部有序结构向无序转变。其中分离蛋白、醇溶蛋白、谷蛋白的热变性温度高,可能是因为分子内部二硫键含量较高,结构紧密,且在热特性变化中重量损失更大,功能性基团改变。结论:分析不同莲子蛋白氨基酸组成、含量以及热特性的差异性,可为莲子蛋白更深入的基础性研究提供科学依据。 展开更多
关键词 莲子蛋白 分离蛋白 分级蛋白 氨基酸特性 特性
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鹅黑素皮质素受体-4基因的克隆与序列分析 被引量:9
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作者 张同燕 陈宏权 +2 位作者 梁忠 李艳和 甘小伟 《畜牧兽医学报》 CAS CSCD 北大核心 2007年第9期913-919,共7页
黑素皮质素受体-4(Melanocortin receptor-4,MC4R)是其黑素皮质素受体MCR(MC1-5R)家族成员之一,属G蛋白偶联受体。它可与瘦蛋白、神经肽、α-黑素细胞刺激素等一起调节动物体重和采食量。参考鸡MC4R基因序列设计引物,克隆并测序了鹅... 黑素皮质素受体-4(Melanocortin receptor-4,MC4R)是其黑素皮质素受体MCR(MC1-5R)家族成员之一,属G蛋白偶联受体。它可与瘦蛋白、神经肽、α-黑素细胞刺激素等一起调节动物体重和采食量。参考鸡MC4R基因序列设计引物,克隆并测序了鹅MC4R基因。结果表明,鹅MC4R基因编码区全长996 bp,其核苷酸序列与鸡的同源性为95.3%,与人、牛、猪等哺乳动物同源性在75%-79%;其氨基酸序列与鸡的同源性达到98.5%。构建哺乳类、鸟类和鱼类MC4R基因核苷酸进化树显示,鹅较早地与哺乳类动物分化开来。分析MC4R蛋白的氨基酸残基特性参数表明,MC4R的7次跨膜结构与MC4R的亲水性区域、电荷密度以及氨基酸残基位于表面概率的变化规律相一致。 展开更多
关键词 黑素皮质素受体-4 序列分析 同源性 氨基酸残基特性参数
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Distribution Behavior of Aminobenzoic Acid by Extraction with Di(2-ethylhexyl)phosphoric Acid 被引量:1
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作者 张瑾 戴猷元 《Chinese Journal of Chemical Engineering》 SCIE EI CAS CSCD 2000年第4期300-303,共4页
A series of extraction equilibrium experiments for aminobenzoic acid with di(2-ethylhexyl)phosphoric acid (D2EHPA) dissolved in n-octane or 1-octanol was carried out. The effects of aminobenzoic acid concentration,D2E... A series of extraction equilibrium experiments for aminobenzoic acid with di(2-ethylhexyl)phosphoric acid (D2EHPA) dissolved in n-octane or 1-octanol was carried out. The effects of aminobenzoic acid concentration,D2EHPA concentration and pH on the distribution ratio were discussed in detail. The infrared spectra of the organic phase loaded with solute illustrated that pH had little effect on the structure of the complex formed. There proceed ion association and cation-exchange.reaction in the extraction. An expression of the equilibrium distribution was proposed. 展开更多
关键词 EXTRACTION chemical complexation aminobenzoic acid D2EHPA pH value
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Content and Partial Characterization of Unknown N in Humic Acids 被引量:1
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作者 YEWEI WENQI-XIAO 《Pedosphere》 SCIE CAS CSCD 1991年第3期283-287,共5页
INTRODUCTION Nitrogen is a key component of soil organic matter. Only when we have succeeded in characterizing the major part of organic N-containing compounds will we be able to understand fully the transformation re... INTRODUCTION Nitrogen is a key component of soil organic matter. Only when we have succeeded in characterizing the major part of organic N-containing compounds will we be able to understand fully the transformation reactions in the soil and to use soil-N more efficiently. However, only about 1/ 4——1/ 2 of the total N in humic acid (HA), one of the major constituents of soil organic matter, can be accounted for as amino acids and amino sugars, and most of the remainder has still to be accounted for. It has been 展开更多
关键词 humic acid non-α-amino acid N-phenyl amino acid real amide unknown N
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Molecular cloning and mRNA expression analysis of myosin heavy chain(MyHC)from fast skeletal muscle of grass carp,Ctenopharyngodon idella 被引量:5
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作者 褚武英 符贵红 +6 位作者 宾石玉 蒙涛 周瑞雪 成嘉 赵发兰 张红芳 张建社 《Chinese Journal of Oceanology and Limnology》 SCIE CAS CSCD 2010年第2期239-247,共9页
The myosin heavy chain(MyHC)is one of the major structural and contracting proteins of muscle.We have isolated the cDNA clone encoding MyHC of the grass carp,Ctenopharyngodon idella. The sequence comprises 5 934 bp,in... The myosin heavy chain(MyHC)is one of the major structural and contracting proteins of muscle.We have isolated the cDNA clone encoding MyHC of the grass carp,Ctenopharyngodon idella. The sequence comprises 5 934 bp,including a 5 814 bp open reading frame encoding an amino acid sequence of 1 937 residues.The deduced amino acid sequence showed 69%homology to rabbit fast skeletal MyHC and 73%–76%homology to the MyHCs from the mandarin fish,walleye pollack,white croaker,chum salmon,and carp.The putative sequences of subfragment-1 and the light meromyosin region showed 61.4%–80%homology to the corresponding regions of other fish MyHCs.The tissue-specific and developmental stage-specific expressions of the MyHC gene were analyzed by quantitative real-time PCR.The MyHC gene showed the highest expression in the muscles compared with the kidney,spleen and intestine.Developmentally,there was a gradual increase in MyHC mRNA expression from the neural formation stage to the tail bud stage.The highest expression was detected in hatching larva.Our work on the MyHC gene from the grass carp has provided useful information for fish molecular biology and fish genomics. 展开更多
关键词 grass carp real-time PCR myosin heavy chain fast skeletal muscle gene expression
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Cloning and stage-specific expression of CK-M1 gene during metamorphosis of Japanese flounder,Paralichthys olivaceus
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作者 陈妍婕 张全启 +6 位作者 齐洁 王志刚 王旭波 孙业盈 钟其旺 李朔 李春梅 《Chinese Journal of Oceanology and Limnology》 SCIE CAS CSCD 2010年第3期558-564,共7页
The symmetrical body of flatfish larvae changes dramatically into an asymmetrical form after metamorphosis. The molecular mechanisms responsible for this change are poorly understood. As an initial step to clarify the... The symmetrical body of flatfish larvae changes dramatically into an asymmetrical form after metamorphosis. The molecular mechanisms responsible for this change are poorly understood. As an initial step to clarify these mechanisms, we used representational difference analysis of cDNA for the identification of genes active during metamorphosis in the Japanese flounder, Paralichthys olicaceus. One of the up-regulated genes was identified as creatine kinase muscle type 1 (CK-M1). Sequence analysis of CK-M1 revealed that it spanned 1 708 bp and encoded a protein of 382 amino acids. The overall amino acid sequence of the CK-M1 was highly conserved with those of other organisms. CK-M1 was expressed in adult fish tissues, including skeletal muscle, intestine and gill. Whole mount in-situ hybridization showed that the enhanced expression of CK-M1 expanded from the head to the whole body of larvae as metamorphosis progressed. Quantitative analysis revealed stage-specific high expression of CK-M1 during metamorphosis. The expression level of CK-M1 increased initially and peaked at metamorphosis, decreased afterward, and finally returned to the pre-metamorphosis level. This stage-specific expression pattern suggested strongly that CK-M1 was related to metamorphosis in the Japanese flounder. Its specific role in metamorphosis requires further study. 展开更多
关键词 CK-M1 METAMORPHOSIS gene expression Paralichthys olivaceus
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Synthesis,physicochemical and biological properties of oligonucleotides incorporated with amino-isonucleosides 被引量:3
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作者 WANG Fang CHEN Yue +4 位作者 HUANG Ye JIN Hong-Wei ZHANG Liang-Ren YANG Zhen-Jun ZHANG Li-He 《Science China Chemistry》 SCIE EI CAS 2012年第1期70-79,共10页
Antisense oligonucleotides(ASONs) and siRNAs have been applied extensively for the regulation of cellular and viral gene expression,and RNAi is currently one of the most promising new approaches for anti-tumor and ant... Antisense oligonucleotides(ASONs) and siRNAs have been applied extensively for the regulation of cellular and viral gene expression,and RNAi is currently one of the most promising new approaches for anti-tumor and anti-viral therapy.In order to improve bioactivity properties and physicochemical properties of siRNA,we synthesized a novel class of ASONs II-VII incorporated with amino-isonucleoside(isoA1 and isoA2) for investigation on basic physicochemical properties.Then we designed amino-isonucleoside(isoA1,isoA2 and isoT1) incorporated siRNA 2-7.Some meaningful results have been obtained from the physicochemical property experiments in ASONs.In RNAi potency experiments,we investigated RNAi potency of each strand of the siRNA.These amino-isonucleosides incorporated siRNAs showed promising bioactivity properties and had position specificity.Reduced off target effect from sense strand loading in siRNA application was observed. 展开更多
关键词 amino-isonucleoside antisense oligonucleotide SIRNA
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