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基于Stacking集成学习的水稻表型组学实体分类研究 被引量:22
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作者 袁培森 杨承林 +2 位作者 宋玉红 翟肇裕 徐焕良 《农业机械学报》 EI CAS CSCD 北大核心 2019年第11期144-152,共9页
为研究整合水稻表型组学相关知识,系统地建立水稻表型组学知识图谱,通过分布式爬虫框架从国家水稻数据中心网站获取水稻表型组学数据集,并以互动百科为辅助数据源获取水稻表型组学数据。对水稻表型组学数据采用TF-IDF技术结合潜在语义... 为研究整合水稻表型组学相关知识,系统地建立水稻表型组学知识图谱,通过分布式爬虫框架从国家水稻数据中心网站获取水稻表型组学数据集,并以互动百科为辅助数据源获取水稻表型组学数据。对水稻表型组学数据采用TF-IDF技术结合潜在语义模型进行预处理,并对水稻表型组学实体进行人工分类和标注。为实现水稻表型组学实体分类,研究了基于堆叠式两阶段集成学习的分类器组合模型,结合K-近邻算法、支持向量机、随机森林、梯度提升决策树机器学习方法,提升水稻表型组学实体数据分类的性能。研究表明,基于堆叠式两阶段集成学习的分类器组合模型对不同类别的水稻表型组学数据都具有较好的多分类能力,对于不平衡的水稻表型组学数据集,本文方法的分类器组合模型对水稻表型组学数据分类效果最佳,Gene类别的F1为90.47%,总体准确率达80.55%,比支持向量机、K-近邻、随机森林和梯度提升决策树4种基分类器的分类准确率平均高6.78个百分点。 展开更多
关键词 水稻表型组学 实体分类 堆叠式集成学习 知识图谱 潜在语义模型
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基于BERT的水稻表型知识图谱实体关系抽取研究 被引量:18
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作者 袁培森 李润隆 +1 位作者 王翀 徐焕良 《农业机械学报》 EI CAS CSCD 北大核心 2021年第5期151-158,共8页
针对水稻表型知识图谱中的实体关系抽取问题,根据植物本体论提出了一种对水稻的基因、环境、表型等表型组学实体进行关系分类的方法。首先,获取水稻表型组学数据,并进行标注和分类;随后,提取关系数据集中的词向量、位置向量及句子向量,... 针对水稻表型知识图谱中的实体关系抽取问题,根据植物本体论提出了一种对水稻的基因、环境、表型等表型组学实体进行关系分类的方法。首先,获取水稻表型组学数据,并进行标注和分类;随后,提取关系数据集中的词向量、位置向量及句子向量,基于双向转换编码表示模型(BERT)构建水稻表型组学关系抽取模型;最后,将BERT模型与卷积神经网络模型、分段卷积网络模型进行结果比较。结果表明,在3种关系抽取模型中,BERT模型表现更佳,精度达95.11%、F1值为95.85%。 展开更多
关键词 水稻表型 知识图谱 关系抽取 双向转换编码表示模型
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基于Random Forest的水稻细菌性条斑病识别方法研究 被引量:11
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作者 袁培森 曹益飞 +2 位作者 马千里 王浩云 徐焕良 《农业机械学报》 EI CAS CSCD 北大核心 2021年第1期139-145,208,共8页
为了快速、准确、有效地识别发病早期的细菌性条斑病,提出基于随机森林(Random forest,RF)算法的水稻细菌性条斑病识别方法,利用光谱成像技术获取该病害的高光谱数据,通过多元散射校正减少和消除噪声及基线漂移对光谱数据的不利影响。... 为了快速、准确、有效地识别发病早期的细菌性条斑病,提出基于随机森林(Random forest,RF)算法的水稻细菌性条斑病识别方法,利用光谱成像技术获取该病害的高光谱数据,通过多元散射校正减少和消除噪声及基线漂移对光谱数据的不利影响。利用随机森林特征重要性指标,选取逻辑回归(LR)、朴素贝叶斯(NB)、决策树(DT)、支持向量分类机(SVC)、k最近邻(KNN)和梯度提升决策树(Gradient boosting decision tree,GBDT)算法进行对比试验。同时筛选出12个位于450~664 nm范围内对识别模型有重要影响的光谱波段,并与全波段进行分类结果比较。试验结果表明:RF算法的分类准确率为95.24%,与试验选取的其他算法相比,效果最优,比NB准确率提高了20.97个百分点;与全波段分类结果相比,利用RF算法基于12个波长的识别,波长数减少了98.05%,识别精确率为94.66%,召回率为99.55%,F1值为97.04%,准确率为94.32%。虽然精确率减少了2.97个百分点、准确率减少了0.85个百分点,但召回率增加了4.4个百分点、F1值增加了0.67个百分点,模型精度满足要求。 展开更多
关键词 水稻表型 随机森林 高光谱成像 细菌性条斑病 病害识别
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基于轮廓投影的盆栽水稻三维重建方法研究 被引量:3
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作者 吴丹 叶军立 +4 位作者 王康 耿泽栋 付晶波 刘凌波 杨万能 《中国农业科技导报》 CAS CSCD 北大核心 2020年第9期87-95,共9页
近几年,基于图像的高通量水稻表型研究取得了极大进展,但从三维层面进行研究的工作则相对较少。一般而言,相对于二维图像,从三维模型中能提取更为全面的性状参数。三维模型重建是作物三维表型研究的基础,提出一种适用于盆栽水稻三维点... 近几年,基于图像的高通量水稻表型研究取得了极大进展,但从三维层面进行研究的工作则相对较少。一般而言,相对于二维图像,从三维模型中能提取更为全面的性状参数。三维模型重建是作物三维表型研究的基础,提出一种适用于盆栽水稻三维点云的重建方法。该方法在相机固定、样本旋转的拍摄模式下获取水稻多视角图像,根据相机标定参数以及水稻轮廓二值图,通过轮廓投影方法重建水稻三维可视外壳点云模型,并通过反投影方法进行点云着色。结果表明,该方法对于不同时期及不同品种的水稻样本均能取得较好重建效果。 展开更多
关键词 水稻表型 三维重建 可视外壳
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Salt Tolerance of 15 Rice (Oryza sativa L.) Varieties in the Office du Niger Zone of Mali
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作者 Minamba Bagayoko Brehima Kamissoko Mamadou M. Coulibaly 《Journal of Agricultural Science and Technology(B)》 2014年第3期224-236,共13页
From 2003 to 2005, in pot and field experiments, rice response to salinity stress of 15 rice varieties was studied at germination and young seedling stages using salt affected soils collected from rice production area... From 2003 to 2005, in pot and field experiments, rice response to salinity stress of 15 rice varieties was studied at germination and young seedling stages using salt affected soils collected from rice production areas in the Office du Niger zone of Mali. The rice varieties were composed of 10 rice genotypes from the breeding program of Mali and five from West African Rice Development Association (WARDA) program (Saint Louis, Senegal). Soil samples were collected from the visually affected soils which were characterized by the appearance of white or black efflorescence on the soil surface. In pot experiments, the genotypes were allowed to germinate in both affected soil types (white efflorescence and black efflorescence) and salt effects on plant seedling growth were observed. Results showed that all varieties were significantly sensitive to salinity stress based on germination, young seedling shoot and root dry weights. Among the rice varieties, the most salt tolerant variety was BG90-2 (a high yielding genotype from the Institut d'Economie Rurale (IER) breeding program) while the most sensitive variety was Telimani (also from the breeding program of IER). All other varieties were intermediary between these two genotypes. A three year field experiment conducted in a highly affected area near Niono confirmed the results of the pot experiment. The relatively salt tolerant genotypes were found in both Malian (BG90-2, Kogoni91-1, SK51-5-2) and WARDA (Was30-11-1-1-4-6-1B) rice breeding programs. 展开更多
关键词 Salinity stress VARIETIES salt tolerance salinisation/alkalinisation irrigation regimes.
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Genetic Similarity Analysis of Hunan Rice Landraces with Same or Similar Name in Household and Genebank Conservations
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作者 JIN Jian-chu LI Xiao-xiang +7 位作者 LI Yong-chao PAN Xiao-wu LIU Wen-qiang DUAN Yong-hong YU Ya-ying SHENG Xin-nian ZHAO Wen-jin WEI Xiu-cai 《Agricultural Science & Technology》 CAS 2018年第3期9-20,共12页
This study was conducted to analyze the phenotypic and genotypic similarity or diversity of rice (Oryza sativa L.) landraces in household and hypothermic genebank conservations in Hunan Province and identify the gen... This study was conducted to analyze the phenotypic and genotypic similarity or diversity of rice (Oryza sativa L.) landraces in household and hypothermic genebank conservations in Hunan Province and identify the genetic distance between the rice landraces with the same or similar names. A total of 92 accessions of rice landraces were divided into seven groups according to their local names, but the morphological traits showed large variations even within the same group as well as between household and genebank conservations. The SSR marker analysis showed that, in all the groups except Group E, the allelic variations within each subgroup of the household conservation were less than those of the genebank conservation, indicating the household-conserved rice landraces’ many-generation purifcation from natural and artifcial selections in the process of their cultivation year after year; and the similarity coeffcient among the household rice landraces was the highest except for Groups C and E. Thus, the study suggested that the same-name or similar-name rice resources retained by farmers would be valuable for collection and evaluation. 展开更多
关键词 Rice Rice landrace with same or similar name SSR marker Phenotypic trait Genetic similarity
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