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应用MM/PBSA方法研究CDK2活性口袋内溶剂水分子对CDK2-配体结合自由能的影响
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作者 杨丽君 贾若 杨胜勇 《化学学报》 SCIE CAS CSCD 北大核心 2009年第3期255-260,共6页
应用MM/PBSA方法研究了CDK2活性口袋内溶剂水分子对CDK2-配体结合自由能的影响.结果表明,活性口袋内溶剂水分子对CDK2-配体相互作用自由能有一定的贡献,其贡献的大小随配体不同而有所差异,导致这种差异的主要原因是活性位点内溶剂水分... 应用MM/PBSA方法研究了CDK2活性口袋内溶剂水分子对CDK2-配体结合自由能的影响.结果表明,活性口袋内溶剂水分子对CDK2-配体相互作用自由能有一定的贡献,其贡献的大小随配体不同而有所差异,导致这种差异的主要原因是活性位点内溶剂水分子与蛋白残基和配体之间形成了不同的氢键相互作用网络。 展开更多
关键词 MM/PBSA CDK2 结合自由能 溶剂水分子 分子动力学
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9-苯基-9-羟基-4,5-二氮杂芴水合物的合成与表征
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作者 尹国杰 《洛阳理工学院学报(自然科学版)》 2014年第2期10-13,共4页
由格氏试剂与4,5-二氮杂-9-芴酮反应合成了标题化合物C17H12N2O·H2O,并通过X-射线衍射法确定了其晶体结构。在每个不对称单元中包括两个有机分子和两个水分子,每个分子中两个4,5-二氮杂芴环几乎在一个平面上,4,5-二氮杂芴环平面与... 由格氏试剂与4,5-二氮杂-9-芴酮反应合成了标题化合物C17H12N2O·H2O,并通过X-射线衍射法确定了其晶体结构。在每个不对称单元中包括两个有机分子和两个水分子,每个分子中两个4,5-二氮杂芴环几乎在一个平面上,4,5-二氮杂芴环平面与相应苯环平面的二面角分别是80.49(6)°和76.57(7)°。并且,由于桥联溶剂水分子的存在,使得整个晶体通过O—H…N和O—H…O氢键堆积而成为三维的网状立体结构。 展开更多
关键词 4 5-二氮杂芴 发光材料 溶剂水分子 晶体结构
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Effects of Solvent Molecules on the Interlayer Spacing of Graphene Oxide 被引量:3
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作者 Liyan Liu Ruifeng Zhang +4 位作者 Ying Liu Haonan Zhu Wei Tan Guorui Zhu Yang Wang 《Transactions of Tianjin University》 EI CAS 2018年第6期555-562,共8页
Graphene oxide (GO) contains numerous functional groups that facilitate the intercalation of polar solvents. The properties and applications of GO are closely related to its interlayer spacing. We report on the chan... Graphene oxide (GO) contains numerous functional groups that facilitate the intercalation of polar solvents. The properties and applications of GO are closely related to its interlayer spacing. We report on the changes in the interlayer spacing of GO after the adsorption of water molecules and the polar organic solvents C2H602 (EG), C3HTNO (DMF), C5H9NO (NMP). Experiments were conducted to investigate the variations in the functional groups and structure of GO after solvent adsorp-tion, and they play a vital role in modeling and verifying the results of molecular dynamics simulation. The most stable GO structures are obtained through molecular dynamics simulation. The expansion of the interlayer spacing of GO after the adsorption of monolayer solvent molecules corresponds to the minimum three-dimensional size of the solvent molecules. The spatial arrangement of solvent molecules also contributes to the changes in interlayer spacing. Most adsorbed molecules are oriented parallel to the carbon plane of GO. However, as additional molecules are adsorbed into the interlaminations of GO, the adsorbed molecules are oriented perpendicular to the carbon plane of GO, and a large space forms between two GO interlayers. In addition, the role of large molecules in increasing interlayer spacing becomes more crucial than that of water molecules in the adsorption of binary solvent systems by GO. 展开更多
关键词 Graphene oxide Interlayer spacing Solvent adsorption
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