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基于祖先重组图重建古今人类群体遗传系谱的研究进展及展望 被引量:1
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作者 杨青鑫 王萌鸽 +2 位作者 刘超 袁慧军 何光林 《遗传》 CAS CSCD 北大核心 2024年第10期849-859,共11页
随着古今人群大规模基因组资源的公布、计算生物学工具的革新及大数据挖掘相关算力的提升,基因组学领域正在经历一场革命性的变化。这些进步和变化不仅显著加深了人们对人类起源、迁徙及混合等复杂演化历程的理解,而且也揭示了这些过程... 随着古今人群大规模基因组资源的公布、计算生物学工具的革新及大数据挖掘相关算力的提升,基因组学领域正在经历一场革命性的变化。这些进步和变化不仅显著加深了人们对人类起源、迁徙及混合等复杂演化历程的理解,而且也揭示了这些过程对人类疾病健康状态的影响,加速了人们对人类健康和疾病遗传学基础的研究,还为挖掘人类基因组中记载的群体演化历史及疾病遗传学基础的演化轨迹提供了新的途径。祖先重组图(ancestral recombination graph,ARG)技术,通过分析全基因组中不同区域的重组事件和共祖特征,重建了基因组片段之间的演化关系。ARG记录了所研究基因组序列分歧以来的所有共祖和重组事件,并指明了每个基因组位置的完整系谱,是基因组分析的理想数据结构。本文综述了ARG技术的理论基础及其研究进展,并探讨了其在法医基因组学、群体遗传学、演化医学、医学基因组学等多个学科领域的转化应用和发展前景,以期推动该技术在基因组学研究中的应用,进一步深化对人类基因组的理解。 展开更多
关键词 祖先重组图 遗传系谱 演化基因组学
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The mitochondrial genomes of Macrocheraia grandis grandis and Myrmoplasta mira(Hemiptera:Heteroptera:Pentatomomorpha) and the unique mitogenome rearrangement in Pyrrhocoroidea 被引量:1
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作者 Yu MEN Fei YE +1 位作者 Yanhui WANG Qiang XIE 《Entomotaxonomia》 CSCD 2019年第2期96-113,共18页
Sequencing technology has developed rapidly in recent years. Complete or nearly complete mitochondrial genomes(mitogenomes) of 155 species from 47 families in Heteroptera have been sequenced. However, the amounts of m... Sequencing technology has developed rapidly in recent years. Complete or nearly complete mitochondrial genomes(mitogenomes) of 155 species from 47 families in Heteroptera have been sequenced. However, the amounts of mitogenomes between those families are unbalanced, which makes it difficult to correctly discern the patterns of mitogenome rearrangement in Heteroptera. Among 21 species from ten families, ten variations in mitogenome rearrangement had been previously reported, among which the translocation between tRNA-Thr and tRNA-Pro was considered as a synapomorphy of Pyrrhocoroidea based on two mitogenomes. As only one mitogenome in each of Largidae and Pyrrhocoridae had been sequenced to conclude the synapomorphy, more mitogenomes of Pyrrhocoroidea need to be explored. In this study, additional two mitogenomes of Pyrrhocoroidea(Macrocheraia grandis grandis(Gray, 1832) and Myrmoplasta mira Gerst-cker, 1892) were sequenced. Both of them also possess the same translocation between tRNA-Thr and tRNA-Pro, which reaffirms that this kind of rearrangement is a molecular synapomorphy of Pyrrhocoroidea. Moreover, we discovered a more complex rearrangement in Myrmoplasta mira, in which six nearly identical duplications of tRNA-Thr were found located downstream of tRNA-Pro. Considering the high biodiversity of Heteroptera, more mitogenomic studies are needed to improve our knowledge about mitogenome rearrangements and the potential synapomorphies. 展开更多
关键词 Pyrrhocoroidea MITOGENOME synapomorphy PHYLOGENOMICS evolutionary history
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Experimental evolution, behavior and genetics: Associative learning as a case study 被引量:1
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作者 Elisabetta VERSACE 《Current Zoology》 SCIE CAS CSCD 2015年第2期226-241,共16页
The evolutionary dynamics of behavioral traits reflect phenotypic and genetic changes. Methodological difficulties in analyzing the genetic dynamics of complex traits have left open questions on the mechanisms that ha... The evolutionary dynamics of behavioral traits reflect phenotypic and genetic changes. Methodological difficulties in analyzing the genetic dynamics of complex traits have left open questions on the mechanisms that have shaped complex beha- viors and cognitive abilities. A strategy to investigate the change of behavior across generations is to assume that genetic con- straints have a negligible role in evolution (the phenotypic gambit) and focus on the phenotype as a proxy for genetic evolution. Empirical evidence and technologic advances in genomics question the choice of neglecting the genetic underlying the dynamics of behavioral evolution. I first discuss the relevance of genetic factors - e.g. genetic variability, genetic linkage, gene interactions - in shaping evolution, showing the importance of taking genetic factors into account when dealing with evolutionary dynamics. I subsequently describe the recent advancements in genetics and genomics that make the investigation of the ongoing evolutionary process of behavioral traits finally attainable. In particular, by applying genomic resequencing to experimental evolution - a me- thod called Evolve & Resequence - it is possible to monitor at the same time phenotypic and genomie changes in populations exposed to controlled selective pressures. Experimental evolution of associative learning, a well-known trait that promptly re- sponds to selection, is a convenient model to illustrate this approach applied to behavior and cognition. Taking into account the recent achievements of the field, I discuss how to design and conduct an effective Evolve & Resequence study on associative learning in Drosophila. By integrating phenotypic and genomic data in the investigation of evolutionary dynamics, new insights can be gained on longstanding questions such as the modularity of mind and its evolution . 展开更多
关键词 Experimental evolution BEHAVIOR GENOMICS Evolve and Resequence LEARNING Drosophila.
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