The research history and new discoveries of the specific characteristics of Yulania Spach were reported, as to the specific characteristics, such as the terminal , axillary and fascicled similar flower buds,sometimes ...The research history and new discoveries of the specific characteristics of Yulania Spach were reported, as to the specific characteristics, such as the terminal , axillary and fascicled similar flower buds,sometimes polycymes; 2-4 flower types of a plant; two spathe-like stipoles of single flower; drape or overlap of tepals, deep split or shallow split on the edge of tepals. The discoveries could provide valuable information for the further studies on the taxonomic system, anthotaxical evolution, phylogenetic relationship and breeding.展开更多
Six new chrysophycean stomatocysts ornamented with reticulum were illustrated based on SEM observation. They were described following the guidelines of the International Statospore Working Group (ISWG). All samples we...Six new chrysophycean stomatocysts ornamented with reticulum were illustrated based on SEM observation. They were described following the guidelines of the International Statospore Working Group (ISWG). All samples were collected from the Great Xing'an Mountains, China. Their taxonomic characteristics and habitats were described to provide new information on the biodiversity of chrysophycean stomatocysts. As is common with many morphotypes, their biological affinities remain unknown.展开更多
This paper provides an overview and a tutorial of the BPP program, which is a Bayesian MCMC program for analyzing multi-locus genomic sequence data under the multispecies coalescent model. An example dataset of five n...This paper provides an overview and a tutorial of the BPP program, which is a Bayesian MCMC program for analyzing multi-locus genomic sequence data under the multispecies coalescent model. An example dataset of five nuclear loci from the East Asian brown frogs is used to illustrate four different analyses, including estimation of species divergence times and population size parameters under the multispecies coalescent model on a fixed species phylogeny （A00）, species tree estimation when the assignment and species delimitation are fixed （A01）, species delimitation using a fixed guide tree （A10）, and joint species delimitation and species-tree estimation or unguided species delimitation （A11）. For the joint analysis （A11）, two new priors are introduced, which assign uniform probabilities for the different numbers of delimited species, which may be useful when assignment, species delimitation, and species phylogeny are all inferred in one joint analysis. The paper ends with a discussion of the assumptions, the strengths and weaknesses of the BPP analysis [Current Zoology 61 （5）： 854-865, 2015].展开更多
Plant cystatins or phytocystatins are cysteine proteinase inhibitors exist widely in different plant species. Because they can kill insects by inhibiting the digestive function of the cysteine proteinase in gut, they ...Plant cystatins or phytocystatins are cysteine proteinase inhibitors exist widely in different plant species. Because they can kill insects by inhibiting the digestive function of the cysteine proteinase in gut, they are believed to play an important role in plant’s defense against pests. Phytocystatins contain the conserved QXVXG motif and show some features on their sequence different to animal cystatins. After sequencing the protein directly and the cDNA clone, a large number of plant cystatins have been characterized. A multialignment with BLAST software and a detail analysis of 38 phytocystatins show that phytocystatins possess a specific conserved amino acid sequence [LRVI]-[AGT]-[RQKE]-[FY]- [AS]-[VI]-X-[EGHDQV]-[HYFQ]-N different to the conserved sequence demonstrated by Margis in 1998. This conserved sequence can be enough to detect with exclusivity phytocystatin sequences on protein data banks. A classification of these phytocystatins is performed and they can be divided into 3 groups according to their features on amino acid sequence, and the group-I can be still divided into 3 subgroups based on the feature of their amino acid and genomic sequence. By the CLUSTALX software, the most conserved nucleotide sequences of phytocystatins were found, which could be used to design the degenerate premiers to search new phytocystatins with PCR reaction.展开更多
基金Supported by Project of Doctor Fund of Henan University of Technology(2006BS015)~~
文摘The research history and new discoveries of the specific characteristics of Yulania Spach were reported, as to the specific characteristics, such as the terminal , axillary and fascicled similar flower buds,sometimes polycymes; 2-4 flower types of a plant; two spathe-like stipoles of single flower; drape or overlap of tepals, deep split or shallow split on the edge of tepals. The discoveries could provide valuable information for the further studies on the taxonomic system, anthotaxical evolution, phylogenetic relationship and breeding.
基金Supported by the National Natural Science Foundation of China (Nos.31070181, 30870162)the Leading Academic Discipline Project of Shanghai Municipal Education Commission (No. J50401)
文摘Six new chrysophycean stomatocysts ornamented with reticulum were illustrated based on SEM observation. They were described following the guidelines of the International Statospore Working Group (ISWG). All samples were collected from the Great Xing'an Mountains, China. Their taxonomic characteristics and habitats were described to provide new information on the biodiversity of chrysophycean stomatocysts. As is common with many morphotypes, their biological affinities remain unknown.
文摘This paper provides an overview and a tutorial of the BPP program, which is a Bayesian MCMC program for analyzing multi-locus genomic sequence data under the multispecies coalescent model. An example dataset of five nuclear loci from the East Asian brown frogs is used to illustrate four different analyses, including estimation of species divergence times and population size parameters under the multispecies coalescent model on a fixed species phylogeny （A00）, species tree estimation when the assignment and species delimitation are fixed （A01）, species delimitation using a fixed guide tree （A10）, and joint species delimitation and species-tree estimation or unguided species delimitation （A11）. For the joint analysis （A11）, two new priors are introduced, which assign uniform probabilities for the different numbers of delimited species, which may be useful when assignment, species delimitation, and species phylogeny are all inferred in one joint analysis. The paper ends with a discussion of the assumptions, the strengths and weaknesses of the BPP analysis [Current Zoology 61 （5）： 854-865, 2015].
基金Supported by The National Basic Research Program (973 Program) ( G1999016003), Graduate Students’ Research Foundation of BeijingForestry University and the Key Laboratory for Silviculture and Conservation of Ministry of Education, Beijing Forestry University
文摘Plant cystatins or phytocystatins are cysteine proteinase inhibitors exist widely in different plant species. Because they can kill insects by inhibiting the digestive function of the cysteine proteinase in gut, they are believed to play an important role in plant’s defense against pests. Phytocystatins contain the conserved QXVXG motif and show some features on their sequence different to animal cystatins. After sequencing the protein directly and the cDNA clone, a large number of plant cystatins have been characterized. A multialignment with BLAST software and a detail analysis of 38 phytocystatins show that phytocystatins possess a specific conserved amino acid sequence [LRVI]-[AGT]-[RQKE]-[FY]- [AS]-[VI]-X-[EGHDQV]-[HYFQ]-N different to the conserved sequence demonstrated by Margis in 1998. This conserved sequence can be enough to detect with exclusivity phytocystatin sequences on protein data banks. A classification of these phytocystatins is performed and they can be divided into 3 groups according to their features on amino acid sequence, and the group-I can be still divided into 3 subgroups based on the feature of their amino acid and genomic sequence. By the CLUSTALX software, the most conserved nucleotide sequences of phytocystatins were found, which could be used to design the degenerate premiers to search new phytocystatins with PCR reaction.
