目的了解重症监护病房(intensive care unit,ICU)环境中耐碳青霉烯类肺炎克雷伯菌(Carbapenem-resistant Klebsiella pneumoniae,CRPK)的分布及同源性,为有效防控院内感染提供依据。方法2022年5月18日对黄石爱康医院ICU环境进行采样,监...目的了解重症监护病房(intensive care unit,ICU)环境中耐碳青霉烯类肺炎克雷伯菌(Carbapenem-resistant Klebsiella pneumoniae,CRPK)的分布及同源性,为有效防控院内感染提供依据。方法2022年5月18日对黄石爱康医院ICU环境进行采样,监测CRKP定植情况,对ICU环境中的CRKP菌株及该病房已确诊感染CRKP患者携带病原菌进行耐药基因及同源性分析。结果环境物表中CRKP分离率为12.90%,且与患者感染菌的耐药基因均主要为blaKPC-2型(占比83.33%),分析显示呈高度同源性,相似系数达92%~98%。结论ICU环境物表中CRKP定植比例较高,多为泛耐药或全耐药且具有同源性,提示院内环境开展CRKP主动监测的重要性。展开更多
Seventy-five previously known plant microRNAs (miRNAs) were classified into 14 families according to their gene sequence identity. A total of 18,694 plant expressed sequence tags (EST) were found in the GenBank EST da...Seventy-five previously known plant microRNAs (miRNAs) were classified into 14 families according to their gene sequence identity. A total of 18,694 plant expressed sequence tags (EST) were found in the GenBank EST databases by comparing all previously known Arabidopsis miRNAs to GenBank’s plant EST databases with BLAST algorithms. After removing the EST sequences with high numbers (more than 2) of mismatched nucleotides, a total of 812 EST contigs were identified. After predicting and scoring the RNA secondary structure of the 812 EST sequences using mFold software, 338 new potential miRNAs were identified in 60 plant species. miRNAs are widespread. Some microRNAs may highly conserve in the plant kingdom, and they may have the same ancestor in very early evolution. There is no nucleotide substitution in most miRNAs among many plant species. Some of the new identified potential miRNAs may be induced and regulated by environmental biotic and abiotic stresses. Some may be preferentially expressed in specific tissues, and are regulated by developmental switching. These findings suggest that EST analysis is a good alternative strategy for identifying new miRNA candidates, their targets, and other genes. A large number of miRNAs exist in different plant species and play important roles in plant developmental switching and plant responses to environmental abiotic and biotic stresses as well as signal transduction. Environmental stresses and developmental switching may be the signals for synthesis and regulation of miRNAs in plants. A model for miRNA induction and expression, and gene regulation by miRNA is hypothesized.展开更多
Small heat shock proteins encompass a widespread but diverse class of proteins, which play key roles in protecting organisms from various stressors. In the present study, the full-length cDNAs of two small heat shock ...Small heat shock proteins encompass a widespread but diverse class of proteins, which play key roles in protecting organisms from various stressors. In the present study, the full-length cDNAs of two small heat shock proteins （MgsHSP22 and MgsHSP24.1） were cloned from Mytilus galloprovincialis, which encoded peptides of 181 and 247 amino acids, respectively. Both MgsHSP22 and MgsHSP24.1 were detected in all tissues examined by real-time PCR, with the highest expression being observed in muscle and gonad tissues. The real-time PCR results revealed that Cd significantly inhibited MgsHSP22 expression at 24 h and MgsHSP24.1 at 24 and 48 h under 5 ug/L Cd2＋ exposure. MgsHSP24.1 expression was also significantly inhibited after 50 ug/L Cd2＋ exposure for 48 h. With regard to antioxidant enzymes, increased GPx and CAT activity were detected under Cd2＋ stress （5 and 50 ug/L）, while no significant difference in SOD activity was observed throughout the experiment. Overall, both MgsHsps and antioxidant enzymes revealed their potential as Cd stress biomarkers in M. galloprovincialis.展开更多
Diatom data of 192 surface sediment samples from the marginal seas in the western Pacific together with modern summer and winter sea surface temperature and salinity data were analyzed.The results of canonical corresp...Diatom data of 192 surface sediment samples from the marginal seas in the western Pacific together with modern summer and winter sea surface temperature and salinity data were analyzed.The results of canonical correspondence analysis show that summer sea-surface salinity(SSS) is highly positively correlated with winter SSS and so is summer sea-surface temperature(SST) with winter SST.The correlations between SSSs and SSTs are less positively correlated,which may be due to interactions of regional current pattern and monsoon climate.The correlations between diatom species,sample sites and environmental variables concur with known diatom ecology and regional oceanographic characters.The results of forward selection of the environmental variables and associated Monte Carlo permutation tests of the statistical significance of each variable suggest that summer SSS and winter SST are the main environmental factors affecting the diatom distribution in the area and therefore preserved diatom data from down core could be used for reconstructions of summer SSS and winter SST in the region.展开更多
Diatoms are widely used to study past and present changes in the marine environment. Unimodal models are appropriate for exploring the relationship between environmental properties in Chinese inshore waters and fossil...Diatoms are widely used to study past and present changes in the marine environment. Unimodal models are appropriate for exploring the relationship between environmental properties in Chinese inshore waters and fossil diatom species derived from modem surface sediments. The best-fit relationships between two multivariate datasets （diatom species and environmental variables） were identified using canonical correspondence analysis （CCA）, which is a constrained ordination technique. The absolute abundance of diatoms in the Chinese inshore waters ranged from 500 to 48 000 valves/g, and the average absolute abundance of all the 29 sites was l l 300 valves/g. 153 species and varieties of diatoms belonging to 42 genera in all were identified in the Chinese inshore waters. There were 28 dominant diatom species in all. According to the absolute abundance of the dominant species and the spatial distribution of the currents from the Chinese inshore waters, 12 diatom assemblages were distinguished from north to south, which reflected the different oceanographic conditions at the regional scale. Of the eight environmental variables considered, the most important environmental variable is winter sea surface salinity （WSS）, which was also the only environmental variable with statistical significance. Therefore, it may be used to establish a transfer functions for the Chinese inshore waters in future paleoclimate studies.展开更多
The Sakaerat Environmental Research Station （SERS） was established to promote long-term ecological research （LTER） and to demonstrate sustainable forest management and biodiversity conservation. In the past decade...The Sakaerat Environmental Research Station （SERS） was established to promote long-term ecological research （LTER） and to demonstrate sustainable forest management and biodiversity conservation. In the past decade, the government has put a lot of effort into rehabilitating degraded forest both inside and surrounding the SERS landscape in order to link fragmented forest patches. However, there is a lack of appropriate methods that allow the measurement of the effectiveness of reforestation. The objective of this paper is to quantify land use and landscape structure changes between 1990 and 2002. The study area encompasses the SERS and its buffer zone. Land use/land cover maps were visually interpreted into 9 classes using temporal Landsat-TM images. These classes were dry evergreen forest, mixed deciduous forest, dry dipterocarp forest, secondary growth, plantation, grassland, old clearing, agriculture ＆ settlement, and water body. In addition, a Geographic Information System （GIS） and FRAGSTATS package were used to assess fragmentation indices. The results revealed that the annual increment rate of dry evergreen forest and dry dipterocarp forest were 0.51% and 0.97%, respectively. In addition, the total area of forest plantation expanded to roughly three times or increased 193.23% during this period. Agricultural and settlement area decreased 7.56% per year. Most of this area was replaced by plantation and natural regeneration. The fragmentation indices indicated that the remaining dry evergreen forest was highly aggregated or had low fragmentation. The number of patches decreased from 7 to 5, and mean patch size increased significantly. However, mixed deciduous forest and dry dipterocarp forest were relatively fragmented. Mixed deciduous forest showed higher fragmentation. Mean patch size area was substantially decreased from 293 ha in 1990 to 123 ha in 2002 and the mean nearest neighbor distance increased by approximately 400 m during this period.展开更多
Particle size, porosity, and the initial phosphorus concentration in sediments are the main factors affecting phosphorus release flux through the sediment-water interface. Sediments can be physically divided to muddy ...Particle size, porosity, and the initial phosphorus concentration in sediments are the main factors affecting phosphorus release flux through the sediment-water interface. Sediments can be physically divided to muddy and sandy matters, and the adsorption-desorption capacity of sediment with phosphorus depends on particle size. According to phosphorus adsorption-desorption experiments, phosphorus sorption capacity of the sediment decreases with the increase of particle dimension. But among the size-similar particles, sediment with a bigger particle size has the larger initial phosphorus release rate. In terms of muddy and sandy sediments, there are inversely proportional relationships between the release rate and the flux. Due to the contact of surface sediment and the overlying water, the release flux from the sediment is either from direct desorption of surface sediment layer or from the diffusion of pore water in the sediment layer, which is mainly determined by sediment particle size and porosity. Generally, static phosphorus release process may include two stages: the first is the initial release. As for coarse particles, phosphorus is desorbed from surface sediment. And for fine particles, phosphorus concentration in water often decreases, mainly from pore water by the molecular diffusion. During the second stage, pore water flows faster in coarse sediment, and phosphorus is easy to desorb from the surface of the particles as diffusion dominates. For the smaller liquid-solid ratio of fine particles and the larger amount of phosphorus adsorption, the release flux from pore water due to diffusion is very small with longer sorption duration.展开更多
Four end members were inverted from surface sediment grain size data from the South Yellow Sea by using the end member(EM) model. The sediment provenance and hydrodynamic meanings of each EM were discussed based on th...Four end members were inverted from surface sediment grain size data from the South Yellow Sea by using the end member(EM) model. The sediment provenance and hydrodynamic meanings of each EM were discussed based on the frequency and spatial distributions of the EMs. EM1 and EM2 reflect the dynamic transport and sorting processes of the terrigenous sediment, and EM3 and EM4 reflect the modification of relic sand. The ocean front mainly affected transport of relatively coarse terrigenous sediment in the South Yellow Sea, and the fine terrigenous sediments were generally unaffected by the ocean front. Fine sediment could pass through the ocean front and deposit in the central South Yellow Sea under weak tidal condition to form most part of the Central Yellow Sea Mud(CYSM). The CYSM extended toward northwest and southwest. The sediment in the north part of the CYSM mainly consisted of sediment from the Yellow River(Huanghe) in the northwest, and the sediment in the southwest part of CYSM mainly consisted of Subei coastal sediments from both the Yangtze River(Changjiang) and the Yellow River. Compared to the traditional method of sediment grain size analysis, the EM model can determine the EMs and provide better explanations of the sediment provenance and dynamic regional sedimentary environment in the study area.展开更多
文摘目的了解重症监护病房(intensive care unit,ICU)环境中耐碳青霉烯类肺炎克雷伯菌(Carbapenem-resistant Klebsiella pneumoniae,CRPK)的分布及同源性,为有效防控院内感染提供依据。方法2022年5月18日对黄石爱康医院ICU环境进行采样,监测CRKP定植情况,对ICU环境中的CRKP菌株及该病房已确诊感染CRKP患者携带病原菌进行耐药基因及同源性分析。结果环境物表中CRKP分离率为12.90%,且与患者感染菌的耐药基因均主要为blaKPC-2型(占比83.33%),分析显示呈高度同源性,相似系数达92%~98%。结论ICU环境物表中CRKP定植比例较高,多为泛耐药或全耐药且具有同源性,提示院内环境开展CRKP主动监测的重要性。
文摘Seventy-five previously known plant microRNAs (miRNAs) were classified into 14 families according to their gene sequence identity. A total of 18,694 plant expressed sequence tags (EST) were found in the GenBank EST databases by comparing all previously known Arabidopsis miRNAs to GenBank’s plant EST databases with BLAST algorithms. After removing the EST sequences with high numbers (more than 2) of mismatched nucleotides, a total of 812 EST contigs were identified. After predicting and scoring the RNA secondary structure of the 812 EST sequences using mFold software, 338 new potential miRNAs were identified in 60 plant species. miRNAs are widespread. Some microRNAs may highly conserve in the plant kingdom, and they may have the same ancestor in very early evolution. There is no nucleotide substitution in most miRNAs among many plant species. Some of the new identified potential miRNAs may be induced and regulated by environmental biotic and abiotic stresses. Some may be preferentially expressed in specific tissues, and are regulated by developmental switching. These findings suggest that EST analysis is a good alternative strategy for identifying new miRNA candidates, their targets, and other genes. A large number of miRNAs exist in different plant species and play important roles in plant developmental switching and plant responses to environmental abiotic and biotic stresses as well as signal transduction. Environmental stresses and developmental switching may be the signals for synthesis and regulation of miRNAs in plants. A model for miRNA induction and expression, and gene regulation by miRNA is hypothesized.
基金Supported by the 100 Talents Program of the Chinese Academy of Sciencesthe National Natural Science Foundation of China(No.41206105)the Key Deployment Program of Chinese Academy of Sciences(No.KZZD-EW-14-03)
文摘Small heat shock proteins encompass a widespread but diverse class of proteins, which play key roles in protecting organisms from various stressors. In the present study, the full-length cDNAs of two small heat shock proteins （MgsHSP22 and MgsHSP24.1） were cloned from Mytilus galloprovincialis, which encoded peptides of 181 and 247 amino acids, respectively. Both MgsHSP22 and MgsHSP24.1 were detected in all tissues examined by real-time PCR, with the highest expression being observed in muscle and gonad tissues. The real-time PCR results revealed that Cd significantly inhibited MgsHSP22 expression at 24 h and MgsHSP24.1 at 24 and 48 h under 5 ug/L Cd2＋ exposure. MgsHSP24.1 expression was also significantly inhibited after 50 ug/L Cd2＋ exposure for 48 h. With regard to antioxidant enzymes, increased GPx and CAT activity were detected under Cd2＋ stress （5 and 50 ug/L）, while no significant difference in SOD activity was observed throughout the experiment. Overall, both MgsHsps and antioxidant enzymes revealed their potential as Cd stress biomarkers in M. galloprovincialis.
基金Supported by the support by the NSFC (No 40676027)the Fund for Creative Research Groups of China (No 40721004)the 111 Project (No B08022)
文摘Diatom data of 192 surface sediment samples from the marginal seas in the western Pacific together with modern summer and winter sea surface temperature and salinity data were analyzed.The results of canonical correspondence analysis show that summer sea-surface salinity(SSS) is highly positively correlated with winter SSS and so is summer sea-surface temperature(SST) with winter SST.The correlations between SSSs and SSTs are less positively correlated,which may be due to interactions of regional current pattern and monsoon climate.The correlations between diatom species,sample sites and environmental variables concur with known diatom ecology and regional oceanographic characters.The results of forward selection of the environmental variables and associated Monte Carlo permutation tests of the statistical significance of each variable suggest that summer SSS and winter SST are the main environmental factors affecting the diatom distribution in the area and therefore preserved diatom data from down core could be used for reconstructions of summer SSS and winter SST in the region.
基金Supported by the National Natural Science Foundation of China(No.41306083)the Special Fund for Basic Work of Science and Technology from the Ministry of Science and Technology of China(No.2009FY210400)the Special Fund of the Third Institute of Oceanography,State Oceanic Administration for Basic Scientific Research Operations(No.HSK 2011028)
文摘Diatoms are widely used to study past and present changes in the marine environment. Unimodal models are appropriate for exploring the relationship between environmental properties in Chinese inshore waters and fossil diatom species derived from modem surface sediments. The best-fit relationships between two multivariate datasets （diatom species and environmental variables） were identified using canonical correspondence analysis （CCA）, which is a constrained ordination technique. The absolute abundance of diatoms in the Chinese inshore waters ranged from 500 to 48 000 valves/g, and the average absolute abundance of all the 29 sites was l l 300 valves/g. 153 species and varieties of diatoms belonging to 42 genera in all were identified in the Chinese inshore waters. There were 28 dominant diatom species in all. According to the absolute abundance of the dominant species and the spatial distribution of the currents from the Chinese inshore waters, 12 diatom assemblages were distinguished from north to south, which reflected the different oceanographic conditions at the regional scale. Of the eight environmental variables considered, the most important environmental variable is winter sea surface salinity （WSS）, which was also the only environmental variable with statistical significance. Therefore, it may be used to establish a transfer functions for the Chinese inshore waters in future paleoclimate studies.
文摘The Sakaerat Environmental Research Station （SERS） was established to promote long-term ecological research （LTER） and to demonstrate sustainable forest management and biodiversity conservation. In the past decade, the government has put a lot of effort into rehabilitating degraded forest both inside and surrounding the SERS landscape in order to link fragmented forest patches. However, there is a lack of appropriate methods that allow the measurement of the effectiveness of reforestation. The objective of this paper is to quantify land use and landscape structure changes between 1990 and 2002. The study area encompasses the SERS and its buffer zone. Land use/land cover maps were visually interpreted into 9 classes using temporal Landsat-TM images. These classes were dry evergreen forest, mixed deciduous forest, dry dipterocarp forest, secondary growth, plantation, grassland, old clearing, agriculture ＆ settlement, and water body. In addition, a Geographic Information System （GIS） and FRAGSTATS package were used to assess fragmentation indices. The results revealed that the annual increment rate of dry evergreen forest and dry dipterocarp forest were 0.51% and 0.97%, respectively. In addition, the total area of forest plantation expanded to roughly three times or increased 193.23% during this period. Agricultural and settlement area decreased 7.56% per year. Most of this area was replaced by plantation and natural regeneration. The fragmentation indices indicated that the remaining dry evergreen forest was highly aggregated or had low fragmentation. The number of patches decreased from 7 to 5, and mean patch size increased significantly. However, mixed deciduous forest and dry dipterocarp forest were relatively fragmented. Mixed deciduous forest showed higher fragmentation. Mean patch size area was substantially decreased from 293 ha in 1990 to 123 ha in 2002 and the mean nearest neighbor distance increased by approximately 400 m during this period.
基金supported by the National Natural Science Foundation of China(Grant No.10972134)the State Key Program of National Natural Science of China(Grant No.11032007)The Shanghai Program for Innovative Research Team in Universities is also acknowledged
文摘Particle size, porosity, and the initial phosphorus concentration in sediments are the main factors affecting phosphorus release flux through the sediment-water interface. Sediments can be physically divided to muddy and sandy matters, and the adsorption-desorption capacity of sediment with phosphorus depends on particle size. According to phosphorus adsorption-desorption experiments, phosphorus sorption capacity of the sediment decreases with the increase of particle dimension. But among the size-similar particles, sediment with a bigger particle size has the larger initial phosphorus release rate. In terms of muddy and sandy sediments, there are inversely proportional relationships between the release rate and the flux. Due to the contact of surface sediment and the overlying water, the release flux from the sediment is either from direct desorption of surface sediment layer or from the diffusion of pore water in the sediment layer, which is mainly determined by sediment particle size and porosity. Generally, static phosphorus release process may include two stages: the first is the initial release. As for coarse particles, phosphorus is desorbed from surface sediment. And for fine particles, phosphorus concentration in water often decreases, mainly from pore water by the molecular diffusion. During the second stage, pore water flows faster in coarse sediment, and phosphorus is easy to desorb from the surface of the particles as diffusion dominates. For the smaller liquid-solid ratio of fine particles and the larger amount of phosphorus adsorption, the release flux from pore water due to diffusion is very small with longer sorption duration.
基金supported by the National Natural Science Foundation of China(Grant Nos.41130856&41206053)the National Key Basic Research Program of China(Grant No.2010CB428901)
文摘Four end members were inverted from surface sediment grain size data from the South Yellow Sea by using the end member(EM) model. The sediment provenance and hydrodynamic meanings of each EM were discussed based on the frequency and spatial distributions of the EMs. EM1 and EM2 reflect the dynamic transport and sorting processes of the terrigenous sediment, and EM3 and EM4 reflect the modification of relic sand. The ocean front mainly affected transport of relatively coarse terrigenous sediment in the South Yellow Sea, and the fine terrigenous sediments were generally unaffected by the ocean front. Fine sediment could pass through the ocean front and deposit in the central South Yellow Sea under weak tidal condition to form most part of the Central Yellow Sea Mud(CYSM). The CYSM extended toward northwest and southwest. The sediment in the north part of the CYSM mainly consisted of sediment from the Yellow River(Huanghe) in the northwest, and the sediment in the southwest part of CYSM mainly consisted of Subei coastal sediments from both the Yangtze River(Changjiang) and the Yellow River. Compared to the traditional method of sediment grain size analysis, the EM model can determine the EMs and provide better explanations of the sediment provenance and dynamic regional sedimentary environment in the study area.
