We evaluated the feeding ecology of largehead hairtail (Trichiurus lepturus) and hairtail (T. margarites). We collected specimens from fishing ports in the Beibu Gulf (Gulf of Tonkin) from October 2008 to September 20...We evaluated the feeding ecology of largehead hairtail (Trichiurus lepturus) and hairtail (T. margarites). We collected specimens from fishing ports in the Beibu Gulf (Gulf of Tonkin) from October 2008 to September 2009 and analyzed their gut contents. We collected 857 T. lepturus and 666 T. margarites samples. The number of stomachs examined in this study was sufficient to describe the monthly and ontogenetic diet shifts for the two species, as indicated by the trophic diversity curves. T. lepturus was a general omnivore, feeding primarily on Bregmaceros rarisquamosu, Decapterus maruadsi, and Acetes chinensis. Conversely, T. margarites preyed primarily on D. maruadsi, B. rarisquamosus, B. nectabanus, and A. chinensis. Both species exhibited distinct ontogenetic diet shifts. Although the two hairtail specie fed on similar sources in the same habitat, the diet overlap was relatively low. Our results suggest that hairtail play an important role in controlling small pelagic and benthic fish populations in the gulf. This trophic correlation shall be used for developing a marine ecosystem model for the Beibu Gulf.展开更多
Introduced species may outcompete or hybridize with native species, resulting in the loss of native biodiversity or even alteration of ecosystem processes. In this study, we reported an alien distromatic Ulva species,...Introduced species may outcompete or hybridize with native species, resulting in the loss of native biodiversity or even alteration of ecosystem processes. In this study, we reported an alien distromatic Ulva species, which was found in an embayment(Holly Pond) connected with Long Island Sound, USA. The morphological and anatomical observations in combination with molecular data were used for its identification to species. Anatomy of collected specimens showed that the cell shape in rhizoidal and basal regions was round and the marginal teeth along the basal and median region were not found. These characteristics were primarily identical to the diagnostic characteristics of Ulva laetevirens Areschoug(Chlorophyta). The plastid-encoding tufA and nucleus-encoding ITS1 were used for its molecular identification. Phylogenetic analysis for the tufA gene placed the specimens from Holly Pond in a well-supported clade along with published sequences of U. laetevirens identified early without any sequence divergence. In ITS tree, the sample also formed well-supported clades with the sequences of U. laetevirens with an estimated sequence divergence among the taxa in these clades as low as 1%. These findings confirmed the morpho-anatomical conclusion. Native to Australia, this species was reported in several countries along the Mediterranean coast after the late of 1990 s. This is the first time that U. laetevirens is found in the northeast coast of United States and the second record for Atlantic North America.展开更多
In order to discern dental morphometric variations among the Asian colobines, residuals of the colobines, derived from allometric baselines formed by the Asian macaques (Macaca), were analyzed with Principal Compone...In order to discern dental morphometric variations among the Asian colobines, residuals of the colobines, derived from allometric baselines formed by the Asian macaques (Macaca), were analyzed with Principal Components Analysis and Euclidean Distances. Results indicated that the widely accepted view that the colobines possess relatively smaller front teeth than the macaques is only the case for the first incisors. The colobines show relatively smaller molars than the macaques. Such profiles may be related to the differences in dietary preferences between the two major groups of the Asian Old World monkeys. The magnitude of such differences is not as great as usullay assumed for the two groups that contain both African and Asian taxa. In other words, the two Asian cercopithecoid groups may have homogenously been shaped by the tectonic modifications and climate alterations in the past five million years. There exist marked differences among the Asian colobines when each of the genera is compared with macaques; the dental profile reflects not only the variation in geographic distribution but also in phylogenetic divergence. Thus, the snub-nosed monkeys (Rhinopithecus) and the gray langurs (Semnopithecus) are characterized by relatively larger molars than the other colobines - larger even than those of the macaques. The differences among Asian colobines, depicted by Euclidean Distances, seems to reflect the relationship of the phylogeny and evolution between colobines and cercopithecines.展开更多
The recovery of phosphorus in eutrophic water bodies adsorption in sawdust can be promoted by Fe(III) oxide-hydroxides is important to ensure water and food security, phosphorus biofllms. The main objective of this ...The recovery of phosphorus in eutrophic water bodies adsorption in sawdust can be promoted by Fe(III) oxide-hydroxides is important to ensure water and food security, phosphorus biofllms. The main objective of this study was to analyze the influence of iron addition in sawdust on phosphorus adsorption. The microcosm experiment was performed with water and sediment samples from a eutrophic reservoir located in Barra Bonita/SP. Three control flasks (without bags) and 18 others as treatments (with two bags filled with sawdust, with or without previous Fe(II) addition) were assembled. The addition of iron did not promote greater phosphorus adsorption, the sawdust without previous iron addition had a total phosphorus concentration of 49μg·P·g^-1, while the sawdust with previous iron addition had 14.4μg.p.g^-1. The use of sawdust for the remediation of eutrophic water bodies is interesting, especially considering the low-cost and possibility of reuse as fertilizer in agriculture.展开更多
A number of basic and applied questions in ecology and environmental management require the characterization of soil and leaf litter faunal diversity. Recent advances in high-throughput sequencing of barcode-gene ampl...A number of basic and applied questions in ecology and environmental management require the characterization of soil and leaf litter faunal diversity. Recent advances in high-throughput sequencing of barcode-gene amplicons ('metabarcoding') have made it possible to survey biodiversity in a robust and efficient way. However, one obstacle to the widespread adoption of this technique is the need to choose amongst many candidates for bioinformatic processing of the raw sequencing data. We compare three candidate pipelines for the processing of 18S small subunit rDNA metabarcode data from solid substrates: (i) USEARCH/CROP, (ii) Denoiser/UCLUST, and (iii) OCTUPUS. The three pipelines produced reassuringly similar and highly correlated assessments of community composition that are dominated by taxa known to characterize the sampled environments. However, OCTUPUS appears to inflate phylogenetic diversity, because of higher sequence noise. We therefore recommend either the USEARCH/CROP or Denoiser/UCLUST pipelines, both of which can be run within the QIIME (Quantitative Insights Into Microbial Ecology) environment.展开更多
Aims Biodiversity patterns along elevational gradients have been well documented.Yet,the variations of biodiversity patterns along elevations and their underlying mechanisms are still unclear.Integrating multiple face...Aims Biodiversity patterns along elevational gradients have been well documented.Yet,the variations of biodiversity patterns along elevations and their underlying mechanisms are still unclear.Integrating multiple facets of biodiversity provides novel insights into the mechanisms for driving community assembly.In this study,species abundance information was incorporated into taxonomic and phylogenetic diversity to reveal the ecological and evolutionary forces of plant community assembly along an elevational gradient in subtropical forests.Methods We selected 17 woody plant plots along an elevational gradient from 270 to 1470 m in eastern China’s subtropical forests.Both presence-based and abundance-based measures of angiosperm species were used to quantify taxonomic alpha diversity,phylogenetic alpha diversity,phylogenetic relatedness,as well as taxonomic and phylogenetic dissimilarity among these plots.And the relations between these measures and climatic and topographic variables were analyzed.Important Findings For both abundance-weighted and unweighted measures,we observed an overall increasing pattern for taxonomic alpha diversity along elevation,and distance-decay trends of taxonomic and phylogenetic similarity with increased elevational distances.However,there were disparity patterns of phylogenetic alpha diversity between abundance-weighted and unweighted measures.For phylogenetic structure,there was no significant trend along elevation.Both topographical and microclimatic variables were main drivers of diversity patterns and phylogenetic structure.Compared with unweighted measures,abundance-weighted measures were strongly related with the slope and stand basal area.Overall,our results prove that deterministic processes mediated by local species abundance imprint on plant community composition along the elevational gradient.展开更多
Ecological niche modeling has emerged as an useful tool in the investigation of the phylogeographic histories of species or communities in a region. The high biodiversity (oftentimes cryptic), and complex geography ...Ecological niche modeling has emerged as an useful tool in the investigation of the phylogeographic histories of species or communities in a region. The high biodiversity (oftentimes cryptic), and complex geography and geological history of Southeast Asia particularly call for multipronged approaches in phylogeographic investigations. Past studies have focused on taxa that are associated with lowland rainforests, which is the dominant natural vegetation type. Here, we combine published phylogenetic data, ecological niche modeling and paleo-climate models to reveal potential drivers of divergence in two open-forest bird species, the oriental magpie-robin Copsychus saularis and Coppersmith barbet Megalaima haemacephala. In spite of broad overlap in current distributions, there are subtle differences in their climatic niches, which result in different responses to past climatic changes. For C saularis, both Last Glacial Maximum climate models indicated that the entire Sundaland was climati- cally suitable, while phylogenetic analyses found divergent eastern and western Sundaland lineages. We thus postulate that this genetic divergence was a result of past separations of coastal habitats into eastern and western portions due to the emergence of Sunda shelf as sea-level fell. The current separation of morphological subspecies in Borneo is maintained by low climatic suitability (high annual rainfall) in certain regions. The extirpation of M. haemacephala from Borneo and southern Malay Peninsula might have been driven by unsuitable conditions (high temperature seasonality) in central Sundaland and/or the lack of open woodlands. Our study shows that ecological niche modeling adds a powerful dimension to our attempt to understand lineage evolution in space [Current Zoology 61 (5): 922-934, 2015].展开更多
Aims We aimed at disentangling the effects of spatial distance,current and past environmental dissimilarity,and their combinations on tree community taxonomic and phylogenetic turnover by addressing the following ques...Aims We aimed at disentangling the effects of spatial distance,current and past environmental dissimilarity,and their combinations on tree community taxonomic and phylogenetic turnover by addressing the following questions:(i)Is tree community taxonomic and phylogenetic turnover related to the indirect effects of spatial distance via environmental dissimilarity?(ii)Does tree community taxonomic and phylogenetic turnover respond to paleoclimate(Last Glacial Maximum and Mid-Holocene)?Methods The study was carried out in 14 Atlantic rainforest sites in Brazil(20.4 ha sampled)containing 615 tree species from 83 plant families.We obtained plot-level geographic coordinates and soil variables and site-level bioclimatic variables in the current,Mid-Holocene and Last Glacial Maximum.We used structural equation models with a distance-based approach to(i)test the direct effects of spatial distance and environmental dissimilarity and(ii)test the indirect effects of spatial distance via environmental dissimilarity on taxonomic(Bray–Curtis distance)and phylogenetic turnover(Comdist and Comdistnt distances).Important Findings Our results suggest a weak indirect effect of spatial distance via environmental dissimilarity on taxonomic and phylogenetic turnover.Tree community turnover was driven by the direct effects of neutral,niche-based and historical processes.Thus,we inferred that the paleoclimate(historical processes)promoted the selection of the clades that gave rise to the current flora,while spatial distances(neutral processes)limited the dispersal range of species from the regional pool and environmental conditions(niche-based processes)locally selected the taxa that are able to persist.展开更多
Usually considered a morphologically conservative group, didelphid marsupials present consider- able variation in ecology and body size, some of which were shown to relate to morphological structures. Thus, changes on...Usually considered a morphologically conservative group, didelphid marsupials present consider- able variation in ecology and body size, some of which were shown to relate to morphological structures. Thus, changes on orbit morphology are likely and could be related to that variation. We calculated orbit orientation in 873 specimens of 16 Didelphidae genera yielding estimates of orbits convergence (their position relative to midsagittal line) and verticality (their position relative to frontal plane). We then compared similarities in these variables across taxa to ecological, morpho- logical and phylogenetic data to evaluate the influencing factors on orbit orientation in didelphids. We found an inverse relation between convergence and verticality. Didelphids orbits have low ver- ticality but are highly convergent, yet orbit orientation differs significantly between taxa, and that variation is related to morphological aspects of the cranium. Rostral variables are the only morpho- logical features correlated with orbit orientation: increasing snout length yields more convergent orbits, whereas increase on snout breadth imply in more vertical orbits. Size and encephalization quotients are uncorrelated with orbit orientation. Among ecological data, diet showed significant correlation whereas locomotion is the factor that less affects the position of orbits. Phylogeny is uncorrelated to any orbital parameters measured. Ecological factors seemingly play a more import- ant role on orbit orientation than previously expected, and differentiation on orbit orientation seems to be more functional than inherited. Thus, despite the apparent homogeneity on didelphid morphology, there is subtle morphological variability that may be directly related to feeding behavior.展开更多
基金Supported by the National Natural Science Foundation of China (No.30771653)the Bureau of Fisheries,Ministry of Agriculture,Department of Education of Guangdong Province (No.LYM09089)Guangdong Ocean University (No.2009-11)
文摘We evaluated the feeding ecology of largehead hairtail (Trichiurus lepturus) and hairtail (T. margarites). We collected specimens from fishing ports in the Beibu Gulf (Gulf of Tonkin) from October 2008 to September 2009 and analyzed their gut contents. We collected 857 T. lepturus and 666 T. margarites samples. The number of stomachs examined in this study was sufficient to describe the monthly and ontogenetic diet shifts for the two species, as indicated by the trophic diversity curves. T. lepturus was a general omnivore, feeding primarily on Bregmaceros rarisquamosu, Decapterus maruadsi, and Acetes chinensis. Conversely, T. margarites preyed primarily on D. maruadsi, B. rarisquamosus, B. nectabanus, and A. chinensis. Both species exhibited distinct ontogenetic diet shifts. Although the two hairtail specie fed on similar sources in the same habitat, the diet overlap was relatively low. Our results suggest that hairtail play an important role in controlling small pelagic and benthic fish populations in the gulf. This trophic correlation shall be used for developing a marine ecosystem model for the Beibu Gulf.
基金partly funded by the China Scholarship Councilsupports of this work by the Connecticut Sea Grant College Program (NA10OAR4170095+1 种基金 CT Sea Grant R/A38)from the Perkin Elmer research fund at the University of Connecticut, Perkin Elmer Analytical Division of E, G & G, Wellesley, MA, USA
文摘Introduced species may outcompete or hybridize with native species, resulting in the loss of native biodiversity or even alteration of ecosystem processes. In this study, we reported an alien distromatic Ulva species, which was found in an embayment(Holly Pond) connected with Long Island Sound, USA. The morphological and anatomical observations in combination with molecular data were used for its identification to species. Anatomy of collected specimens showed that the cell shape in rhizoidal and basal regions was round and the marginal teeth along the basal and median region were not found. These characteristics were primarily identical to the diagnostic characteristics of Ulva laetevirens Areschoug(Chlorophyta). The plastid-encoding tufA and nucleus-encoding ITS1 were used for its molecular identification. Phylogenetic analysis for the tufA gene placed the specimens from Holly Pond in a well-supported clade along with published sequences of U. laetevirens identified early without any sequence divergence. In ITS tree, the sample also formed well-supported clades with the sequences of U. laetevirens with an estimated sequence divergence among the taxa in these clades as low as 1%. These findings confirmed the morpho-anatomical conclusion. Native to Australia, this species was reported in several countries along the Mediterranean coast after the late of 1990 s. This is the first time that U. laetevirens is found in the northeast coast of United States and the second record for Atlantic North America.
文摘In order to discern dental morphometric variations among the Asian colobines, residuals of the colobines, derived from allometric baselines formed by the Asian macaques (Macaca), were analyzed with Principal Components Analysis and Euclidean Distances. Results indicated that the widely accepted view that the colobines possess relatively smaller front teeth than the macaques is only the case for the first incisors. The colobines show relatively smaller molars than the macaques. Such profiles may be related to the differences in dietary preferences between the two major groups of the Asian Old World monkeys. The magnitude of such differences is not as great as usullay assumed for the two groups that contain both African and Asian taxa. In other words, the two Asian cercopithecoid groups may have homogenously been shaped by the tectonic modifications and climate alterations in the past five million years. There exist marked differences among the Asian colobines when each of the genera is compared with macaques; the dental profile reflects not only the variation in geographic distribution but also in phylogenetic divergence. Thus, the snub-nosed monkeys (Rhinopithecus) and the gray langurs (Semnopithecus) are characterized by relatively larger molars than the other colobines - larger even than those of the macaques. The differences among Asian colobines, depicted by Euclidean Distances, seems to reflect the relationship of the phylogeny and evolution between colobines and cercopithecines.
文摘The recovery of phosphorus in eutrophic water bodies adsorption in sawdust can be promoted by Fe(III) oxide-hydroxides is important to ensure water and food security, phosphorus biofllms. The main objective of this study was to analyze the influence of iron addition in sawdust on phosphorus adsorption. The microcosm experiment was performed with water and sediment samples from a eutrophic reservoir located in Barra Bonita/SP. Three control flasks (without bags) and 18 others as treatments (with two bags filled with sawdust, with or without previous Fe(II) addition) were assembled. The addition of iron did not promote greater phosphorus adsorption, the sawdust without previous iron addition had a total phosphorus concentration of 49μg·P·g^-1, while the sawdust with previous iron addition had 14.4μg.p.g^-1. The use of sawdust for the remediation of eutrophic water bodies is interesting, especially considering the low-cost and possibility of reuse as fertilizer in agriculture.
基金supported by Yunnan Province (20080A001)Chinese Academy of Sciences (0902281081,KSCX2-YW-Z-1027)+2 种基金the National Natural Science Foundation of China (31170498)Ministry of Science and Technology of China (2012FY110800)Kunming Institute of Zoology,and the University of East Anglia
文摘A number of basic and applied questions in ecology and environmental management require the characterization of soil and leaf litter faunal diversity. Recent advances in high-throughput sequencing of barcode-gene amplicons ('metabarcoding') have made it possible to survey biodiversity in a robust and efficient way. However, one obstacle to the widespread adoption of this technique is the need to choose amongst many candidates for bioinformatic processing of the raw sequencing data. We compare three candidate pipelines for the processing of 18S small subunit rDNA metabarcode data from solid substrates: (i) USEARCH/CROP, (ii) Denoiser/UCLUST, and (iii) OCTUPUS. The three pipelines produced reassuringly similar and highly correlated assessments of community composition that are dominated by taxa known to characterize the sampled environments. However, OCTUPUS appears to inflate phylogenetic diversity, because of higher sequence noise. We therefore recommend either the USEARCH/CROP or Denoiser/UCLUST pipelines, both of which can be run within the QIIME (Quantitative Insights Into Microbial Ecology) environment.
基金This work was supported by the National Natural Science Foundation of China(32071538 to J.Z.and 31600343 to K.S.)Shanghai Natural Science Foundation(20ZR1418100 to J.Z.)East China Normal University to J.Z.and Z.Z.
文摘Aims Biodiversity patterns along elevational gradients have been well documented.Yet,the variations of biodiversity patterns along elevations and their underlying mechanisms are still unclear.Integrating multiple facets of biodiversity provides novel insights into the mechanisms for driving community assembly.In this study,species abundance information was incorporated into taxonomic and phylogenetic diversity to reveal the ecological and evolutionary forces of plant community assembly along an elevational gradient in subtropical forests.Methods We selected 17 woody plant plots along an elevational gradient from 270 to 1470 m in eastern China’s subtropical forests.Both presence-based and abundance-based measures of angiosperm species were used to quantify taxonomic alpha diversity,phylogenetic alpha diversity,phylogenetic relatedness,as well as taxonomic and phylogenetic dissimilarity among these plots.And the relations between these measures and climatic and topographic variables were analyzed.Important Findings For both abundance-weighted and unweighted measures,we observed an overall increasing pattern for taxonomic alpha diversity along elevation,and distance-decay trends of taxonomic and phylogenetic similarity with increased elevational distances.However,there were disparity patterns of phylogenetic alpha diversity between abundance-weighted and unweighted measures.For phylogenetic structure,there was no significant trend along elevation.Both topographical and microclimatic variables were main drivers of diversity patterns and phylogenetic structure.Compared with unweighted measures,abundance-weighted measures were strongly related with the slope and stand basal area.Overall,our results prove that deterministic processes mediated by local species abundance imprint on plant community composition along the elevational gradient.
文摘Ecological niche modeling has emerged as an useful tool in the investigation of the phylogeographic histories of species or communities in a region. The high biodiversity (oftentimes cryptic), and complex geography and geological history of Southeast Asia particularly call for multipronged approaches in phylogeographic investigations. Past studies have focused on taxa that are associated with lowland rainforests, which is the dominant natural vegetation type. Here, we combine published phylogenetic data, ecological niche modeling and paleo-climate models to reveal potential drivers of divergence in two open-forest bird species, the oriental magpie-robin Copsychus saularis and Coppersmith barbet Megalaima haemacephala. In spite of broad overlap in current distributions, there are subtle differences in their climatic niches, which result in different responses to past climatic changes. For C saularis, both Last Glacial Maximum climate models indicated that the entire Sundaland was climati- cally suitable, while phylogenetic analyses found divergent eastern and western Sundaland lineages. We thus postulate that this genetic divergence was a result of past separations of coastal habitats into eastern and western portions due to the emergence of Sunda shelf as sea-level fell. The current separation of morphological subspecies in Borneo is maintained by low climatic suitability (high annual rainfall) in certain regions. The extirpation of M. haemacephala from Borneo and southern Malay Peninsula might have been driven by unsuitable conditions (high temperature seasonality) in central Sundaland and/or the lack of open woodlands. Our study shows that ecological niche modeling adds a powerful dimension to our attempt to understand lineage evolution in space [Current Zoology 61 (5): 922-934, 2015].
基金The work was supported by CAPES(Coordenacao de Aperfeiqoamento Pessoal de Nivel Superior/Coordination for the Improvement of Higher Education Personnel),FAPEMIG(Fundacao de Amparo a Pesquisa de Minas Gerais/Foundation for Supporting Research of the State of Minas Gerais)CNPq(Conselho Nacional de Desenvolvimento Cientffico e Tecnologico/National Council for Scientific and Technological Development)and to the Federal University of Lavras.
文摘Aims We aimed at disentangling the effects of spatial distance,current and past environmental dissimilarity,and their combinations on tree community taxonomic and phylogenetic turnover by addressing the following questions:(i)Is tree community taxonomic and phylogenetic turnover related to the indirect effects of spatial distance via environmental dissimilarity?(ii)Does tree community taxonomic and phylogenetic turnover respond to paleoclimate(Last Glacial Maximum and Mid-Holocene)?Methods The study was carried out in 14 Atlantic rainforest sites in Brazil(20.4 ha sampled)containing 615 tree species from 83 plant families.We obtained plot-level geographic coordinates and soil variables and site-level bioclimatic variables in the current,Mid-Holocene and Last Glacial Maximum.We used structural equation models with a distance-based approach to(i)test the direct effects of spatial distance and environmental dissimilarity and(ii)test the indirect effects of spatial distance via environmental dissimilarity on taxonomic(Bray–Curtis distance)and phylogenetic turnover(Comdist and Comdistnt distances).Important Findings Our results suggest a weak indirect effect of spatial distance via environmental dissimilarity on taxonomic and phylogenetic turnover.Tree community turnover was driven by the direct effects of neutral,niche-based and historical processes.Thus,we inferred that the paleoclimate(historical processes)promoted the selection of the clades that gave rise to the current flora,while spatial distances(neutral processes)limited the dispersal range of species from the regional pool and environmental conditions(niche-based processes)locally selected the taxa that are able to persist.
文摘Usually considered a morphologically conservative group, didelphid marsupials present consider- able variation in ecology and body size, some of which were shown to relate to morphological structures. Thus, changes on orbit morphology are likely and could be related to that variation. We calculated orbit orientation in 873 specimens of 16 Didelphidae genera yielding estimates of orbits convergence (their position relative to midsagittal line) and verticality (their position relative to frontal plane). We then compared similarities in these variables across taxa to ecological, morpho- logical and phylogenetic data to evaluate the influencing factors on orbit orientation in didelphids. We found an inverse relation between convergence and verticality. Didelphids orbits have low ver- ticality but are highly convergent, yet orbit orientation differs significantly between taxa, and that variation is related to morphological aspects of the cranium. Rostral variables are the only morpho- logical features correlated with orbit orientation: increasing snout length yields more convergent orbits, whereas increase on snout breadth imply in more vertical orbits. Size and encephalization quotients are uncorrelated with orbit orientation. Among ecological data, diet showed significant correlation whereas locomotion is the factor that less affects the position of orbits. Phylogeny is uncorrelated to any orbital parameters measured. Ecological factors seemingly play a more import- ant role on orbit orientation than previously expected, and differentiation on orbit orientation seems to be more functional than inherited. Thus, despite the apparent homogeneity on didelphid morphology, there is subtle morphological variability that may be directly related to feeding behavior.