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基于快速多示例多标记学习的G蛋白偶联受体生物学功能预测 被引量:3
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作者 吴建盛 冯巧遇 +3 位作者 袁京洲 胡海峰 周家特 高昊 《计算机研究与发展》 EI CSCD 北大核心 2018年第8期1674-1682,共9页
G蛋白偶联受体(G protein-coupled receptors,GPCRs)是人类中最庞大的膜蛋白家族,也是很多药物的重要靶点,准确了解GPCRs生物学功能是理解它们参与的生物学过程及其药物作用机制的关键.以前的研究表明,蛋白质功能预测可抽象为多示例多... G蛋白偶联受体(G protein-coupled receptors,GPCRs)是人类中最庞大的膜蛋白家族,也是很多药物的重要靶点,准确了解GPCRs生物学功能是理解它们参与的生物学过程及其药物作用机制的关键.以前的研究表明,蛋白质功能预测可抽象为多示例多标记学习(multi-instance multi-label learning,MIML)问题.设计了一种基于快速多示例多标记学习方法 MIMLfast的GPCRs生物学功能预测模型.该模型采用了一种新的混合特征,它考虑了GPCRs结构域的三联氨基酸、氨基酸关联、进化、二级结构关联、信号肽及无序残基等多种信息.实验结果证明,该模型获得了很好的性能,优于目前最优的多示例多标记学习、多标记学习的预测方法和CAFA蛋白质功能预测方法. 展开更多
关键词 G蛋白偶联受体 生物学功能预测 快速多示例多标记学习 结构域 混合特征
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Significance of regenerating islet-derived type Ⅳ gene expression in gastroenterological cancers 被引量:6
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作者 Masakatsu Numata Takashi Oshima 《World Journal of Gastroenterology》 SCIE CAS CSCD 2012年第27期3502-3510,共9页
The regenerating islet-derived members (Reg), a group of small secretory proteins, which are involved in cell proliferation or differentiation in digestive organs, are upregulated in several gastrointestinal cancers... The regenerating islet-derived members (Reg), a group of small secretory proteins, which are involved in cell proliferation or differentiation in digestive organs, are upregulated in several gastrointestinal cancers, functioning as trophic or antiapoptotic factors. Regenerat- ing islet-derived type Ⅳ (RegⅣ), a member of the Reg gene family, has been reported to be overexpressed in gastroenterological cancers. RegIV overexpression in tumor cells has been associated with carcinogen- esis, cell growth, survival and resistance to apoptosis. Cancer tissue expressing RegIV is generally associated with more malignant characteristics than that with- out such expression, and RegⅣ is considered a novel prognostic factor as well as diagnostic marker in some gastroenterological cancers. We previously investigated the expression levels of RegⅣ mRNA of 202 surgical colorectal cancer specimens with quantitative real-time reverse-transcriptase polymerase chain reaction and reported that a higher level of RegⅣ gene expression was a significant independent predictor of colorec- tal cancer. The biologic functions of RegⅣ protein in cancer tissue, associated with carcinogenesis, anti- apoptosis and invasiveness, are being elucidated by molecular investigations using transfection techniques or neutralizing antibodies of RegIV, and the feasibility of antibody therapy targeting RegIV is being assessed. These studies may lead to novel therapeutic strate- gies for gastroenterological cancers expressing RegⅣ. This review article summarizes the current information related to biological functions as well as clinical impor- tance of RegⅣ gene to clarify the significance of Reg~ expression in gastroenterological cancers. 展开更多
关键词 Regenerating islet-derived type protein Gastrointestinal neoplasms Prognosis Epidermal growthfactor receptor/protein kinase B
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