To screen for molecular signatures that are commonly dysregulated in subtypes of a certain cancer, a novel meta-analysis is designed to perform rank score (RS) on lists of genes that are derived from different studi...To screen for molecular signatures that are commonly dysregulated in subtypes of a certain cancer, a novel meta-analysis is designed to perform rank score (RS) on lists of genes that are derived from different studies. RS is a promising way to detect signatures across platforms when integrating with one vs. all (OVA) or one vs. one (OVO) schemes of comparison. Among six published microarray expression datasets on acute leukemia, the biological signals hereafter provide stronger clustering support than systematic differences among microarray platforms. Moreover, the pediatric BCR_ABL specific genes can be used to correctly discriminate independent adult BCR ABL cases. The obtained results redound to discover, validate and treat the subtypes from microarray gene expression profiles of cancer, which have been plentifully researched, such as leukemia.展开更多
The dromedary camel (Camelus dromedarius) is a significant socioeconomic importance in several arid and semi-arid regions of North Africa and Middle East, and its milk constitutes an important component of human die...The dromedary camel (Camelus dromedarius) is a significant socioeconomic importance in several arid and semi-arid regions of North Africa and Middle East, and its milk constitutes an important component of human diets in these regions. The camel milk plays a vital role in the food of the Algerian nomads in the Sahara. During February and September, 20 samples of the raw camel's milk were taken starting from different livestock of camels from three different Sahariennes regions (Bechar, EI-Bayadh and Naama). These 20 collected samples were analyzed by physico-chemical and microbiological methods. The results of physicochemical analyze obtained from two hot and cold seasons are respectively the following: T ~C (35.83 and 33.95), pH (6.36 and 6.49), density (1.031 and 1.032), dornic acidity (18.6 and 18.3 ~D), dry matter (93.4 and 144.8 g/L), fat contents (30 and 52.1 g/L), total protein (26.3 and 33.1 g/L) and ashes (7.46 and 8.66 g/L). The protein profile obtained by electrophoretic analysis (SDS-PAGE) showed that camel milk contains several types of proteins and some have a molecular weight identical to major proteins of the cow's milk. The final results showed that camel milk has generally a comparable composition to that of bovine milk. The microbiological analysis, of these samples, detected a significant number of the total microflora, Staphylococcus aureus and total coliforms. The absence of Clostridium and fecal coliforms was observed. Several species of lactic acid bacteria were detected such as Lactococcus lactis subsp, lactis, Lactococcus lactis subsp, lactis biovar, diacetylactis, Weissella cibaria and Enteroccocusfeacalis.展开更多
Protein malnutrition is quite common worldwide; its deficiency has adverse effects in all organs. Edible insect's traditional cultural food, commonly consumed in rural communities, now intake is also being incorporat...Protein malnutrition is quite common worldwide; its deficiency has adverse effects in all organs. Edible insect's traditional cultural food, commonly consumed in rural communities, now intake is also being incorporated in some countries. Grasshoppers comprise proteins, the building blocks of AA (amino acids), that are one of the five classes of complex biomolecules found in cells and tissues that play an important role in human metabolism and nutrition. This research was conducted to determine proximal composition of Sphenarium purpurascens Ch, grasshoppers, focused on proteins and AA. Sampling was performed during autumn, 2013, in Oaxaca State. Dry raw adult insects were ground and proceeded to macro molecules proximal analysis, protein by Kjeldahl AOAC (Association of Official Analytical Chemists) method and essential AA in a Beckman 6300 equipment. Obtained data were: total proteins 71.56%; lipids 8.14%; minerals 3.52%; fiber 7.48%; soluble carbohydrates 9.30%. Essential AA (mg/16 g-N): isoleucine 4.5; leucine 8.1; lysine 5.4; methionine + cysteine 5.1; phenylalanine + tyrosine 8.5; threonine 3.5; tryptophan 0.6; valine 5.5. Sphenarium purpurascens Ch, Grasshoppers represent a good source of proteins and essential AA that can grow almost everywhere, available mostly all year round and affordable to all social groups, thus being a good option to improve human health.展开更多
In order to analyze the complex chemical kinetic mechanism systematically and find out the redundant species and reactions, a numerical platform for mechanism analysis and simplification is established basing on Path ...In order to analyze the complex chemical kinetic mechanism systematically and find out the redundant species and reactions, a numerical platform for mechanism analysis and simplification is established basing on Path Flux Analysis (PFA). It is used to reduce a detailed mechanism for flame inhibited by phosphorus containing compounds, a reduced mechanism with 65 species and 335 reactions is obtained. The detailed and reduced mechanism are both used to calculate the freely-propagating premix C3H8/air flame with different dimethyl methylphosphonate doped over a wide range of equivalence ratios. The concentration distributions of free radicals and major species are compared, and the results under two different mechanisms agree well. The laminar flame speed obtained by the two mechanisms also matches well, with the maximum relative error introduces as a small value of 1.7%. On the basis of the reduced mechanism validation, the correlativity analysis is conducted between flame speed and flee radical concentrations, which can provide information for target species selection in the further mechanism reduction. By analyzing the species and reactions fluxes, the species and reaction paths which contribute the flame inhibition significantly are determined.展开更多
The atypical PKC isoforms (ζ and t) play essential roles in regulating various cellular processes. Both the hetero-interaction between PKCζand p62 through their N-terminal PB 1 domains and the homo-oligomerization...The atypical PKC isoforms (ζ and t) play essential roles in regulating various cellular processes. Both the hetero-interaction between PKCζand p62 through their N-terminal PB 1 domains and the homo-oligomerization of p62 via its PB 1 domain are critical for the activation of NF-r.B signaling; however, the molecular mechanisms concerning the formation and regulation of these homotypic complexes remain unclear. Here we determined the crystal structure of PKCζ-PB 1 in complex with a mono- meric p62-PB 1 mutant, where the massive electrostatic interactions between the acidic OPCA motif of PKCζ-PB 1 and the basic surface of p62-PB 1, as well as additional hydrogen bonds, ensure the formation of a stable and specific complex. The PKCζ-p62 interaction is interfered with the modification of a specific Cys of PKCζ by the antiarthritis drug aurothiomalate, though all four cysteine residues in the PKCζ-PB 1 domain can be modified in in vitro assay. In addition, detailed structural and biochemical analyses demonstrate that the PB 1 domains of aPKCs belong to the type I group, which can depolymerize the high-molecular-weight p62 aggregates into homo-oligomers of lower order. These data together unravel the molecular mecha- nisms of the homo- or hetero-interactions between p62 and PKCζ and provide the basis for designing inhibitors of NF-r,.B sig- naling.展开更多
High-throughput pyrosequencing,carried out in millions of picoliter-sized reactors on a fiber-optic slide,is known for its longer read length.However,both optical crosstalk(which reduces the signal-to-noise ratio of C...High-throughput pyrosequencing,carried out in millions of picoliter-sized reactors on a fiber-optic slide,is known for its longer read length.However,both optical crosstalk(which reduces the signal-to-noise ratio of CCD images)and chemical retention adversely affect the accuracy of chemiluminescence determination,and ultimately decrease the read length and the accuracy of pyrosequencing results.In this study,both titanium and oxidized aluminum films were deposited on the side walls and upper faces of micro-reactor slides to enhance optical isolation;the films reduced the inter-well crosstalk by one order of magnitude.Subsequently,chemical retention was shown to be caused by the lower diffusion coefficient of the side walls of the picolitersized reactors because of surface roughness and random pores.Optically isolated fiber-optic slides over-coated with silicon oxide showed smoother surface morphology,resulting in little chemical retention;this was further confirmed with theoretical calculations.Picoliter-sized micro-reactors coated with titanium-silicon oxide films showed the least inter-well optical crosstalk and chemical retention;these properties are expected to greatly improve the high-throughput pyrosequencing performance.展开更多
文摘To screen for molecular signatures that are commonly dysregulated in subtypes of a certain cancer, a novel meta-analysis is designed to perform rank score (RS) on lists of genes that are derived from different studies. RS is a promising way to detect signatures across platforms when integrating with one vs. all (OVA) or one vs. one (OVO) schemes of comparison. Among six published microarray expression datasets on acute leukemia, the biological signals hereafter provide stronger clustering support than systematic differences among microarray platforms. Moreover, the pediatric BCR_ABL specific genes can be used to correctly discriminate independent adult BCR ABL cases. The obtained results redound to discover, validate and treat the subtypes from microarray gene expression profiles of cancer, which have been plentifully researched, such as leukemia.
文摘The dromedary camel (Camelus dromedarius) is a significant socioeconomic importance in several arid and semi-arid regions of North Africa and Middle East, and its milk constitutes an important component of human diets in these regions. The camel milk plays a vital role in the food of the Algerian nomads in the Sahara. During February and September, 20 samples of the raw camel's milk were taken starting from different livestock of camels from three different Sahariennes regions (Bechar, EI-Bayadh and Naama). These 20 collected samples were analyzed by physico-chemical and microbiological methods. The results of physicochemical analyze obtained from two hot and cold seasons are respectively the following: T ~C (35.83 and 33.95), pH (6.36 and 6.49), density (1.031 and 1.032), dornic acidity (18.6 and 18.3 ~D), dry matter (93.4 and 144.8 g/L), fat contents (30 and 52.1 g/L), total protein (26.3 and 33.1 g/L) and ashes (7.46 and 8.66 g/L). The protein profile obtained by electrophoretic analysis (SDS-PAGE) showed that camel milk contains several types of proteins and some have a molecular weight identical to major proteins of the cow's milk. The final results showed that camel milk has generally a comparable composition to that of bovine milk. The microbiological analysis, of these samples, detected a significant number of the total microflora, Staphylococcus aureus and total coliforms. The absence of Clostridium and fecal coliforms was observed. Several species of lactic acid bacteria were detected such as Lactococcus lactis subsp, lactis, Lactococcus lactis subsp, lactis biovar, diacetylactis, Weissella cibaria and Enteroccocusfeacalis.
文摘Protein malnutrition is quite common worldwide; its deficiency has adverse effects in all organs. Edible insect's traditional cultural food, commonly consumed in rural communities, now intake is also being incorporated in some countries. Grasshoppers comprise proteins, the building blocks of AA (amino acids), that are one of the five classes of complex biomolecules found in cells and tissues that play an important role in human metabolism and nutrition. This research was conducted to determine proximal composition of Sphenarium purpurascens Ch, grasshoppers, focused on proteins and AA. Sampling was performed during autumn, 2013, in Oaxaca State. Dry raw adult insects were ground and proceeded to macro molecules proximal analysis, protein by Kjeldahl AOAC (Association of Official Analytical Chemists) method and essential AA in a Beckman 6300 equipment. Obtained data were: total proteins 71.56%; lipids 8.14%; minerals 3.52%; fiber 7.48%; soluble carbohydrates 9.30%. Essential AA (mg/16 g-N): isoleucine 4.5; leucine 8.1; lysine 5.4; methionine + cysteine 5.1; phenylalanine + tyrosine 8.5; threonine 3.5; tryptophan 0.6; valine 5.5. Sphenarium purpurascens Ch, Grasshoppers represent a good source of proteins and essential AA that can grow almost everywhere, available mostly all year round and affordable to all social groups, thus being a good option to improve human health.
基金Supported by the National Natural Science Foundation of China (51176181), the National Basic Research Program of China (2012CB719704), and the Research Fund for the Doctoral Program of Higher Education (20123402110047).
文摘In order to analyze the complex chemical kinetic mechanism systematically and find out the redundant species and reactions, a numerical platform for mechanism analysis and simplification is established basing on Path Flux Analysis (PFA). It is used to reduce a detailed mechanism for flame inhibited by phosphorus containing compounds, a reduced mechanism with 65 species and 335 reactions is obtained. The detailed and reduced mechanism are both used to calculate the freely-propagating premix C3H8/air flame with different dimethyl methylphosphonate doped over a wide range of equivalence ratios. The concentration distributions of free radicals and major species are compared, and the results under two different mechanisms agree well. The laminar flame speed obtained by the two mechanisms also matches well, with the maximum relative error introduces as a small value of 1.7%. On the basis of the reduced mechanism validation, the correlativity analysis is conducted between flame speed and flee radical concentrations, which can provide information for target species selection in the further mechanism reduction. By analyzing the species and reactions fluxes, the species and reaction paths which contribute the flame inhibition significantly are determined.
基金supported in part by the National Natural Science Foundation of China(31070643 and 31130062)Tsinghua University(20121080028)
文摘The atypical PKC isoforms (ζ and t) play essential roles in regulating various cellular processes. Both the hetero-interaction between PKCζand p62 through their N-terminal PB 1 domains and the homo-oligomerization of p62 via its PB 1 domain are critical for the activation of NF-r.B signaling; however, the molecular mechanisms concerning the formation and regulation of these homotypic complexes remain unclear. Here we determined the crystal structure of PKCζ-PB 1 in complex with a mono- meric p62-PB 1 mutant, where the massive electrostatic interactions between the acidic OPCA motif of PKCζ-PB 1 and the basic surface of p62-PB 1, as well as additional hydrogen bonds, ensure the formation of a stable and specific complex. The PKCζ-p62 interaction is interfered with the modification of a specific Cys of PKCζ by the antiarthritis drug aurothiomalate, though all four cysteine residues in the PKCζ-PB 1 domain can be modified in in vitro assay. In addition, detailed structural and biochemical analyses demonstrate that the PB 1 domains of aPKCs belong to the type I group, which can depolymerize the high-molecular-weight p62 aggregates into homo-oligomers of lower order. These data together unravel the molecular mecha- nisms of the homo- or hetero-interactions between p62 and PKCζ and provide the basis for designing inhibitors of NF-r,.B sig- naling.
基金supported by the Scientific Equipment Research Project of Chinese Academy of Sciences(YZ200823)
文摘High-throughput pyrosequencing,carried out in millions of picoliter-sized reactors on a fiber-optic slide,is known for its longer read length.However,both optical crosstalk(which reduces the signal-to-noise ratio of CCD images)and chemical retention adversely affect the accuracy of chemiluminescence determination,and ultimately decrease the read length and the accuracy of pyrosequencing results.In this study,both titanium and oxidized aluminum films were deposited on the side walls and upper faces of micro-reactor slides to enhance optical isolation;the films reduced the inter-well crosstalk by one order of magnitude.Subsequently,chemical retention was shown to be caused by the lower diffusion coefficient of the side walls of the picolitersized reactors because of surface roughness and random pores.Optically isolated fiber-optic slides over-coated with silicon oxide showed smoother surface morphology,resulting in little chemical retention;this was further confirmed with theoretical calculations.Picoliter-sized micro-reactors coated with titanium-silicon oxide films showed the least inter-well optical crosstalk and chemical retention;these properties are expected to greatly improve the high-throughput pyrosequencing performance.