There is virtually no limit in the number of ionic liquids. How to select proper ones or discover new ones with desirable properties in such a large pool of ionic liquids? It has become a bottleneck in the researches ...There is virtually no limit in the number of ionic liquids. How to select proper ones or discover new ones with desirable properties in such a large pool of ionic liquids? It has become a bottleneck in the researches and applications of ionic liquids. Mendeleev’s periodic law states that the properties of the elements vary periodically. Whether the similar regularity exists among ionic or mo-lecular fragments of compounds is an interesting topic. In this work, we attempted to establish a pe-riodicity and draw a “map” of ionic liquids for providing definite guidance to discover, design, and se-lect the proper ionic liquids rather than trial-and-error. If a complete regularity of the system of ionic liquids can be finally established in the future, we are near an epoch in understanding the existing differences and the reasons for the similarity of the ions or molecular fragments.展开更多
文摘基于最近发展的分子碎片共轭帽(molecular fractionation with conjugate caps,MFCC)方法,表皮生长因子受体(epidermal growth factor receptor,EGFR)与其抑制剂的相互作用能得以用完整的量子力学来计算,主要包括上市的Iressa[第一代美国食品及药物管理局(Food and Drug Administration,FDA)通过的药物]和4-苯胺基喹唑啉类抑制剂Tarceva(已上市)、CI-1033与EKI-785。对EGFR的完整体系(超过5 000个原子)与4-苯胺基喹唑啉类抑制剂之间的结合作用采用了量子力学计算方法。结合体系的量子能量计算,用Hartree-Fock与密度泛函理论(density functional theory,DFT)2种方法,EGFR与Tarceva之间的相互作用能基于它们两者复合物的晶体结构得到,而其他抑制剂与EGFR的相互作用能则通过分子对接软件预测的构型进行计算。利用MFCC方法,获得了量子相互作用能谱,清楚地给出了EGFR每个氨基酸片段与4-苯胺基喹唑啉类抑制剂之间的单个相互作用能。量子研究发现,4-苯胺基喹唑啉类抑制剂与EGFR的结合通过1个氢键和静电相互作用。Iressa、Tarceva、CI-1033、EKI-785与EGFR的结合能计算值分别为-40.23、-53.09、-33.92、-31.47kcal/mol(1cal=4.184J)。研究表明,Tarceva比第一代FDA通过的药物Iressa有更强的结合能力,而CI-1033、EKI-785则表现出一般的结合作用,另外,与MFCC计算的相互作用能谱相比,有一些相互作用在力场作用能谱中被明显高估。
基金This work was financially supported by the National Natural Science Foundation of China (Grant No. 20436050) Hi-Tech Research and Development Program of China (863 Project, No. 2004AA649030).
文摘There is virtually no limit in the number of ionic liquids. How to select proper ones or discover new ones with desirable properties in such a large pool of ionic liquids? It has become a bottleneck in the researches and applications of ionic liquids. Mendeleev’s periodic law states that the properties of the elements vary periodically. Whether the similar regularity exists among ionic or mo-lecular fragments of compounds is an interesting topic. In this work, we attempted to establish a pe-riodicity and draw a “map” of ionic liquids for providing definite guidance to discover, design, and se-lect the proper ionic liquids rather than trial-and-error. If a complete regularity of the system of ionic liquids can be finally established in the future, we are near an epoch in understanding the existing differences and the reasons for the similarity of the ions or molecular fragments.
