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小鼠NPC细胞RFX1ChIP-Seq数据分析
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作者 刘晓杰 赵志虎 +2 位作者 赵小英 张文斗 刘选明 《湖南大学学报(自然科学版)》 EI CAS CSCD 北大核心 2013年第2期59-65,共7页
利用NCBI数据库中小鼠Embryonic Stem Cells(ESC)与Neural ProgenitorCells(NPC)的基因芯片结果及NPC时期的RFX1ChIP-Seq数据,进行有关RFX1的分析,结果表明:RFX1结合位点富集在1,2,4,5,7,9,11染色体上,Y染色体上最少,其他染色体上比较均... 利用NCBI数据库中小鼠Embryonic Stem Cells(ESC)与Neural ProgenitorCells(NPC)的基因芯片结果及NPC时期的RFX1ChIP-Seq数据,进行有关RFX1的分析,结果表明:RFX1结合位点富集在1,2,4,5,7,9,11染色体上,Y染色体上最少,其他染色体上比较均衡;在基因组中结合位点分布区域主要在基因的promoter区域,约有53.2%,其次是intergentic,占22.5%,body区域,占13.1%,enhancer区域,占11.2%.说明RFX1是以结合在基因的promoter区为主要形式对目的基因进行调控.同时在DAVID数据库中用生物信息学方法探索了RFX1靶基因的生物学功能分类. 展开更多
关键词 神经先祖细胞 RFX1 ChIP—Seq
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TGFβ signaling hyperactivation-induced tumorigenicity during the derivation of neural progenitors from mouse ESCs 被引量:2
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作者 Xianfa Yang Ran Wang +9 位作者 Xiongjun Wang Guoqing Cai Yun Qian Su Feng Fangzhi Tan Kun Chen Ke Tang Xingxu Huang Naihe Jing Yunbo Qiao 《Journal of Molecular Cell Biology》 SCIE CAS CSCD 2018年第3期216-228,共13页
Clinical therapies of pluripotent stem cells (PSCs)-based transplantation have been hindered by frequent development of terato- mas or tumors in animal models and clinical patients. Therefore, clarifying the mechani... Clinical therapies of pluripotent stem cells (PSCs)-based transplantation have been hindered by frequent development of terato- mas or tumors in animal models and clinical patients. Therefore, clarifying the mechanism of carcinogenesis in stem cell therapy is of great importance for reducing the risk of tumorigenicity. Here we differentiate Oct4-GFP mouse embryonic stem cells (mESCs) into neural progenitor cells (NPCs) and find that a minority of Oct4+ cells are continuously sustained at Oct4+ state. These cells can be enriched and proliferated in a standard ESC medium. Interestingly, the differentiation potential of these enriched cells is tightly restricted with much higher tumorigenic activity, which are thus defined as differentiation-resistant ESCs (DR-ESCs). Transcriptomic and epigenomic analyses show that DR-ESCs are characterized by primordial germ cell-like gene sig- natures (Dazl, Rec8, Stro8, BUmp1, etc.) and specific epigenetic patterns distinct from mESCs. Moreover, the DR-ESCs possess germ cell potential to generate Sycp3+ haploid cells and are able to reside in sperm-free spermaduct induced by busulfan. Finally, we find that TGFβ signaling is overactivated in DR-ESCs, and inhibition of TGFβ signaling eliminates the tumorigenicity of mESC-derived NPCs by inducing the full differentiation of DR-ESCs. These data demonstrate that these TGFβ-hyperactivated germ ceU-like DR-ESCs are the main contributor for the tumorigenicity of ESCs-derived target cell therapy and that inhibition of TGFβ signaling in ESC-derived NPC transplantation could drastically reduce the risk of tumor development. Keywords: embryonic stem cells, differentiation-resistant ESCs, tumorigenicity, germ cell, TGFβ signaling 展开更多
关键词 embryonic stem cells differentiation-resistant ESCs tumorigenicity germ cell TGFβ signaling
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