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重庆市新确证HIV-1感染者传播性耐药突变研究 被引量:7
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作者 邓仁麑 何静 +3 位作者 刘奉凤 李俊刚 李清华 王静 《第三军医大学学报》 CAS CSCD 北大核心 2018年第3期270-274,共5页
目的通过对重庆市新确证人类免疫缺陷病毒1型(HIV-1)感染者耐药基因型的研究,了解我市耐药病毒株的传播水平。方法采集2014年5月至2017年6月我院新确证未治疗的HIV-1感染者的外周血175例,分离血浆后,使用一步法RT-PCR和巢式PCR扩增HIV-1... 目的通过对重庆市新确证人类免疫缺陷病毒1型(HIV-1)感染者耐药基因型的研究,了解我市耐药病毒株的传播水平。方法采集2014年5月至2017年6月我院新确证未治疗的HIV-1感染者的外周血175例,分离血浆后,使用一步法RT-PCR和巢式PCR扩增HIV-1pol区的基因,PCR产物经纯化后测序,将获得的基因序列与美国雅培公司的耐药数据库对比,得出患者对药物的耐药性解释。结果 PCR扩增阳性且测序成功168例,发现16例患者存在耐药突变,传播性耐药突变检出率达9.5%(16/168),其中2014-2017年的耐药比例分别为7.0%、8.0%、9.1%、12.5%,属中度流行。非核苷类反转录酶抑制剂(NNRTIs)、核苷类反转录酶抑制剂(NRTIs)和蛋白酶抑制剂(PIs)耐药突变率分别为9.5%、2.4%和0%。V179D/E(7.1%)和M184V(2.4%)分别是出现最多的NNRTI和NRTI耐药突变位点。168例感染者中,CRF07_BC亚型是主要流行亚型(42.8%),其次为CRF01_AE(38.7%)和CRF08_BC亚型(10.1%)。结论重庆市新确证未治疗HIV-1感染者耐药比例有逐年上升的趋势,应加强监测,预防原发性耐药和耐药毒株的传播。 展开更多
关键词 人类免疫缺陷病毒1型 新确证 未治疗 传播性耐药突变
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北京市2016年新确证未治疗HIV感染者传播性耐药突变研究 被引量:12
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作者 郝明强 辛若雷 +6 位作者 王娟 李雪 郝尹虓 贺雄 黄春 王宇 卢红艳 《国际病毒学杂志》 2017年第2期90-95,共6页
目的分析北京市2016年新确证HIV感染者HIV病毒pol基因传播性耐药突变特征。方法利用一步法逆转录PCR和巢式PCR扩增感染者体内HIV病毒的pol基因,并对扩增产物进行测序。对得到的序列信息进行分析,分别获得病毒的亚型分布、耐药突变类... 目的分析北京市2016年新确证HIV感染者HIV病毒pol基因传播性耐药突变特征。方法利用一步法逆转录PCR和巢式PCR扩增感染者体内HIV病毒的pol基因,并对扩增产物进行测序。对得到的序列信息进行分析,分别获得病毒的亚型分布、耐药突变类型和构成。结果2016年北京市新确证HIV感染者传播性耐药突变比例为4.2%。712名感染者中,CRF01_AE亚型为主要流行亚型,占49.3%,CRF07_BC亚型占28.8%,B亚型占10.3%。结论与往年的研究相比,北京市未治疗的HIV感染者耐药率有所下降,总体上属于低水平的HIV耐药流行。 展开更多
关键词 HIV-1 新确证 未治疗 传播性耐药突变
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Potato Y Potyvirus Helper Component Proteinase Enhances Long-distance Movement of Potato X Potexvirus 被引量:1
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作者 李为民 鲁瑞芳 +2 位作者 郭明 陈毓荃 彭学贤 《Acta Botanica Sinica》 CSCD 2001年第9期935-940,共6页
To mutagenize two conserved CCCT and PTK motifs in the central domain of Chinese strain of potato Y potyvirus (PVY-C) helper component proteinase (HC-Pro), four mutants of HC-Pro gene were obtained by PCR and site-dir... To mutagenize two conserved CCCT and PTK motifs in the central domain of Chinese strain of potato Y potyvirus (PVY-C) helper component proteinase (HC-Pro), four mutants of HC-Pro gene were obtained by PCR and site-directed mutagenesis, and then were inserted into the constitutive expression vector pBin438. Leaves from tobacco (Nicotiana tabacum L. cv. K326) were transformed with these four plant expression plasmids by Agrobacterium-mediated transformation, respectively. Southern and Western blotting analyses showed that these four mutants were integrated into tobacco genomic DNA and could express the corresponding proteins in most of die transgenic plants. The challenge of transgenic plants with potato X potexvirus (PVX) revealed that the expression products of PVY-C HC-Pro mutants in transgenic plants greatly abolished functions of HC-Pro in enhancing the accumulation and pathogenicity of PVX, indicating that CCCT and PTK motifs of HC-Pro were required for PVX/PVY synergism. Meanwhile, the results demonstrated that PVY-C HC-Pro had a function in accelerating the long-distance movement of PVX in these transgenic plants for the first time. 展开更多
关键词 potato Y potyvirus potato X potexvirus helper component proteinase gene mutation synergism
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Virologic characteristics of hepatitis B virus in patients infected via maternal-fetal transmission 被引量:11
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作者 Tao Shen Xin-Min Yan Yun-Lian Zou Jian-Mei Gao Hong Dong 《World Journal of Gastroenterology》 SCIE CAS CSCD 2008年第37期5674-5682,共9页
AIM: To determine whether HBV with the same characteristics causes dissimilar mutations in different hosts. METHODS: Full-length HBV genome was amplified and linked with pMD T18 vector. Positive clones were selected b... AIM: To determine whether HBV with the same characteristics causes dissimilar mutations in different hosts. METHODS: Full-length HBV genome was amplified and linked with pMD T18 vector. Positive clones were selected by double-restriction endonuclease digestion (EcoRⅠ and HindⅢ) and PCR. Twenty seven clones were randomly selected from an asymptomatic mother [at two time points: 602 (1 d) and 6022 (6 mo)] and her son [602 (S)], and the phylogenetic and mutational analysis was performed using BioEditor, Clustal X and MEGA software. Potential immune epitopes were determined by the Stabilized Matrix Method (SMM), SMM-Align Method and Emini Surface Accessibility Prediction. RESULTS: All of the 27 sequences were genotype C, the divergence between the mother and son was 0%-0.8%. Compared with another 50 complete sequences of genotype C, the mother and her son each had 13 specific nucleotides that differed from the other genotype C isolates. AA 1-11 deletion in preS1 was the dominant mutation in the mother (14/18). The 1762T/1764A double mutation existed in all clones of the mother, 3 of them were also coupled with G1896A mutation, but none were found in the son.17 bp deletion starting at nucleotide 2330 was the major mutation (5/9) in the son, which caused seven potential HLA class Ⅰ epitopes and one B cell epitope deletion, and produced a presumptive new start codon, downstream from the original one of the P gene. CONCLUSION: The HBV strain in the son came from his mother, and discrepant mutation occurred in the mother and her son during infection. 展开更多
关键词 Hepatic B virus Vertical transmission Fullgenome Mutation PHYLOGENETIC DELETION
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中国西北地区东部沙尘暴区划研究 被引量:7
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作者 郑广芬 冯建民 +4 位作者 赵光平 周勇 姚宗国 陈楠 丁永红 《自然资源学报》 CSSCI CSCD 北大核心 2010年第10期1676-1688,共13页
利用西北地区东部98个气象站的沙尘暴日数、持续时间资料,采用经验正交分解(EOF、REOF)、滑动t检验、Mann-Kendall突变检验及小波变换,对其时空分布规律进行了诊断分析。结果表明:整个区域沙尘暴日数大致呈北多南少型分布;受大尺度气候... 利用西北地区东部98个气象站的沙尘暴日数、持续时间资料,采用经验正交分解(EOF、REOF)、滑动t检验、Mann-Kendall突变检验及小波变换,对其时空分布规律进行了诊断分析。结果表明:整个区域沙尘暴日数大致呈北多南少型分布;受大尺度气候异常的影响,全区一致的沙尘暴异常是该区域最主要的表现形式。西北地区东部沙尘暴日数空间异常可分为4个沙尘暴气候区:河西走廊—阿拉善区、鄂尔多斯—乌兰布和区、柴达木—茶卡寒旱区、陕甘宁黄土高原区。河西走廊—阿拉善区沙尘暴频次最高,陕甘宁黄土高原区频次最少;近40多年来西北地区东部沙尘暴日数呈减少的态势;沙尘暴日数在20世纪80年代中期到末期发生气候突变,突变起源于沙漠及相邻地区,并由外围沙漠区向中间地带传播。沙尘暴持续时间最长的不是高频区河西走廊—阿拉善区,而是鄂尔多斯—乌兰布和区,最短的也不在频次最低的陕甘宁黄土高原区,而在柴达木—茶卡寒旱区;沙尘暴高发的河西走廊—阿拉善区、鄂尔多斯—乌兰布和区,持续时间没有发生明显的突变,这两个区域20世纪80年代中期以后沙尘暴持续时间变率增大;90年代以后沙尘暴持续时间有增长的趋势。 展开更多
关键词 西北地区东部 沙尘暴日数 突变传播 小波变换
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