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缺血再灌注大鼠视网膜细胞线粒体钙含量与组织型纤溶酶原激活物活性的相关性 被引量:1
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作者 陈少强 黄焱 张更 《眼视光学杂志》 CAS 2005年第3期189-191,共3页
目的观察缺血再灌注大鼠视网膜细胞线粒体钙含量与组织型纤溶酶原激活物(tissue-type plasminogen acti-vator,TPA)活性的变化,探讨两者之间的相关性。方法采用提高眼压法造成视网膜缺血后,恢复眼压形成血流再灌注。实验分正常对照组和... 目的观察缺血再灌注大鼠视网膜细胞线粒体钙含量与组织型纤溶酶原激活物(tissue-type plasminogen acti-vator,TPA)活性的变化,探讨两者之间的相关性。方法采用提高眼压法造成视网膜缺血后,恢复眼压形成血流再灌注。实验分正常对照组和缺血1 h再灌注1 h组、缺血1 h再灌注2 h组、缺血2 h再灌注1 h组、缺血2 h再灌注2 h组四个实验组,每组各取10例测定视网膜细胞线粒体钙浓度与TPA活性的变化,并进行相关性分析。结果缺血再灌注后,大鼠视网膜细胞线粒体钙含量与TPA活性随缺血和再灌注时间的延长而升高(P<0.01),两者之间呈显著相关性(r=0.524,P<0.01)。结论缺血再灌注可引起视网膜细胞线粒体钙含量的升高,从而导致视网膜组织TPA活性的增高,引起视网膜组织结构和功能的损伤。 展开更多
关键词 缺血再灌注 视网膜/分析 线粒体/分析 /分析 组织型纤溶酶原激活物/分析 大鼠
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抗线粒体抗体对原发性胆汁性肝硬化的诊断价值 被引量:3
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作者 于丽萍 杨丽萍 姜正德 《中国误诊学杂志》 CAS 2007年第25期5997-5998,共2页
目的:探讨抗线粒体抗体(AMA)测定对原发性胆汁性肝硬化(PBC)的临床意义。方法:40例原发性胆汁性肝硬化(PBC)及26例自身免疫性肝炎(AIH)、14例原发性硬化性胆管炎(PSC),采用间接免疫荧光法检测抗线粒体抗体,并对结果进行分析。结果:原发... 目的:探讨抗线粒体抗体(AMA)测定对原发性胆汁性肝硬化(PBC)的临床意义。方法:40例原发性胆汁性肝硬化(PBC)及26例自身免疫性肝炎(AIH)、14例原发性硬化性胆管炎(PSC),采用间接免疫荧光法检测抗线粒体抗体,并对结果进行分析。结果:原发性胆汁性肝硬化阳性率92.5%(37/40),自身免疫性肝炎阳性率38.5%(10/26),原发性硬化性胆管炎阳性率14.3%(2/14),PBC、AIH、PSC与正常组对比差异均有显著性(P<0.01),PBC与AIH对比差异有显著性(P<0.05)。结论:血清抗AMA抗体检测对诊断原发性胆汁性肝硬化患者有着重要临床意义。 展开更多
关键词 肝硬化 胆汁性/诊断 线粒体抗体/分析
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Complete Sequence and Gene Organization of the Mitochondrial Genome of Tokay (Gekko gecko) 被引量:8
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作者 韩德民 周开亚 《Zoological Research》 CAS CSCD 北大核心 2005年第2期123-128,共6页
Long-PCR amplification, clone and primer-walking sequencing methods were employed in determine the complete sequence of mitochondrial genome of tokay (Gekko gecko). The genome is 16 435 bp in size, contains 13 protein... Long-PCR amplification, clone and primer-walking sequencing methods were employed in determine the complete sequence of mitochondrial genome of tokay (Gekko gecko). The genome is 16 435 bp in size, contains 13 protein-coding, 2 ribosomal and 22 transfer RNA genes. The mt genome of Gekko is similar to most of the vertebrates in gene components, order, orientation, tRNA structures, low percentage of guanine and high percentage of thymine, and skews of base GC and AT. Base A was preferred at third codon positions for protein genes is similar to amphibians and fishes rather than amnion vertebrates. The standard stop codes (TAA) present only in three protein genes, less than those of most vertebrates. Transfer RNA genes range in length from 63 to 76 nt, their planar structure present characteristic clover leaf, except for tRNA-Cys and tRNA-Ser (AGY) because of lacking the D arm. 展开更多
关键词 Gekko gecko SQUAMATE Complete sequence of mitochondrial genome Gene organization
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Application of Mitochondria DNA Hypervariable Region in Identification of Genetic Relationships among Different Varieties in Musa paradisiaca 被引量:2
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作者 闻盼盼 郭泽锋 +2 位作者 许林兵 黄秉智 陈谷 《Agricultural Science & Technology》 CAS 2010年第8期91-93,101,共4页
[Objective] The aim was to establish an effective method for the identification of genetic relationships among different varieties in Musa paradisaca. [Method] Based on the diversity of mitochondria DNA intron sequenc... [Objective] The aim was to establish an effective method for the identification of genetic relationships among different varieties in Musa paradisaca. [Method] Based on the diversity of mitochondria DNA intron sequence among different varieties of M. paradisaca,an intron of cytochrome oxidase subunit II gene in mitochondria DNA genome was amplified and sequenced. And then the cluster analysis was used to classify 16 varieties of M. paradisaca,which belonged to five genotypes (AAA,AA,AAB,ABB and BB). [Result] The 16 varieties of M. paradisaca could be divided to three classes:the first class contained one variety,the genotype of which was BB; the second class contained seven varieties,the genotype of which was ABB; the third class contained eight varieties,the genotypes of which included AA,AAA,AAB and BB. The new varieties YiXian 1,2 and 3 showed the nearest relationship with FenZa. [Conclusion] The result of classification was consistent with the genotypes,thus verified the feasibility and effectiveness of the new method in the genetic relationship identification of M. paradisaca germplasm. 展开更多
关键词 Musa paradisaca MTDNA INTRON Cluster analysis
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Sequence Analysis of Mitochondrial DNA D-loop Region in Xinjiang Goose 被引量:1
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作者 邵勇钢 岳涛 +1 位作者 李建华 刘银凤 《Agricultural Science & Technology》 CAS 2012年第11期2290-2292,2337,共4页
[Objective] The sequences of mitochondrial DNA D-loop region of Xinjiang Goose with three different colors of plumage were analyzed in order to study the genetic diversity of Xinjiang Goose, as well as the phylogeny a... [Objective] The sequences of mitochondrial DNA D-loop region of Xinjiang Goose with three different colors of plumage were analyzed in order to study the genetic diversity of Xinjiang Goose, as well as the phylogeny and evolution. [Method] Ten geese were selected randomly from the core populations of grey-, mosaic- and white-plumaged Xinjiang Goose respectively with a total number of thirty as experi- mental materials, of which the blood samples were collected from the largest vein under the wing (brachial vein) for DNA extraction. Sequences of mitochondrial DNA D-loop regions were determined using DNA sequencing technology to analyze the polymorphism. In addition, the genetic distances among different populations were estimated through the comparison with the reference sequences. [Resull] The con- tents of A, G, C and T nucleotides in the D-loop region of Xinjiang Goose were 28.85%, 17.05%, 25.38% and 28.72%, respectively. The average haplotype diversity and nucleotide diversity of Xinjiang Goose were 0.583 and 0.056. Xinjiang Goose and Greylag Goose were clustered into the same group. [Conclusion] The results showed that Xinjiang Geese with three different colors of plumage all descend from Greylag Goose (Anser anser). 展开更多
关键词 Xinjiang Goose Mitochondrial DNA D-loop region Sequence analysis
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Complete Mitochondrial Genome of the Red Fox (Vuples vuples) and Phylogenetic Analysis with Other Canid Species 被引量:4
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作者 钟华明 张洪海 +2 位作者 沙未来 张承德 陈玉才 《Zoological Research》 CAS CSCD 北大核心 2010年第2期122-130,共9页
The whole mitochondrial genome sequence of red fox (Vuples vuples) was determined. It had a total length of 16 723 bp. As in most mammal mitochondrial genome, it contained 13 protein coding genes, two ribosome RNA g... The whole mitochondrial genome sequence of red fox (Vuples vuples) was determined. It had a total length of 16 723 bp. As in most mammal mitochondrial genome, it contained 13 protein coding genes, two ribosome RNA genes, 22 transfer RNA genes and one control region. The base composition was 31.3% A, 26.1% C, 14.8% G and 27.8% T, respectively. The codon usage of red fox, arctic fox, gray wolf, domestic dog and coyote followed the same pattern except for an unusual ATT start codon, which initiates the NADH dehydrogenase subunit 3 gene in the red fox. A long tandem repeat rich in AC was found between conserved sequence block 1 and 2 in the control region. In order to confirm the phylogenetic relationships of red fox to other canids, phylogenetic trees were reconstructed by neighbor-joining and maximum parsimony methods using 12 concatenated heavy-strand protein-coding genes. The result indicated that arctic fox was the sister group of red fox and they both belong to the red fox-like clade in family Canidae, while gray wolf, domestic dog and coyote belong to wolf-like clade. The result was in accordance with existing phylogenetic results. 展开更多
关键词 Red fox Mitochondrial genome CANIDAE Phylogenetic analysis
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Quantitative analysis of tumor mitochondrial RNA using microarray 被引量:4
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作者 Cheng-BoHan Xiao-YunMao +3 位作者 YanXin Shao-ChengWang Jia-MingMa Yu-JieZhao 《World Journal of Gastroenterology》 SCIE CAS CSCD 2005年第1期36-40,共5页
AIM: To design a novel method to rapidly detect the quantitative alteration of mtRNA in patients with tumors.METHODS: Oligo 6.22 and Primer Premier 5.0 bio-soft were used to design 15 pairs of primers of mtRNA cDNA pr... AIM: To design a novel method to rapidly detect the quantitative alteration of mtRNA in patients with tumors.METHODS: Oligo 6.22 and Primer Premier 5.0 bio-soft were used to design 15 pairs of primers of mtRNA cDNA probes in light of the functional and structural property of mtDNA, and then RT-PCR amplification was used to produce 15 probes of mtRNA from one normal gastric mucosal tissue. Total RNA extracted from 9 gastric cancers and corresponding normal gastric mucosal tissues was reverse transcribed into cDNA labeled with fluorescein. The spotted mtDNA microarrays were made and hybridized. Finally,the microarrays were scanned with a GeneTACTM laser scanner to get the hybridized results. Northern blot was used to confirm the microarray results.RESULTS: The hybridized spots were distinct with clear and consistent backgrounds. After data was standardized according to the housekeeping genes, the results showed that the expression levels of some mitochondrial genes in gastric carcinoma were different from those in the corresponding non-cancerous regions.CONCLUSION: The mtDNA expression microarray can rapidly, massively and exactly detect the quantity of mtRNA in tissues and cells. In addition, the whole expressive information of mtRNA from a tumor patient on just one slide can be obtained using this method, providing an effective method to investigate the relationship between mtDNA expression and tumorigenesis. 展开更多
关键词 Mitochondrial RNA Gastric cancer Microarray technique
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Transcript profiles of mitochondrial and cytoplasmic manganese superoxide dismutases in Exopalaemon carinicauda under ammonia stress 被引量:2
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作者 任海 李健 +3 位作者 李吉涛 刘萍 梁忠秀 吴建华 《Chinese Journal of Oceanology and Limnology》 SCIE CAS CSCD 2015年第3期714-724,共11页
Superoxide dismutase (SOD) is one of the most important antioxidant defense enzymes, and is considered as the first line against oxidative stress. In this study, we cloned a mitochondrial manganese (Mn) SOD (mMn... Superoxide dismutase (SOD) is one of the most important antioxidant defense enzymes, and is considered as the first line against oxidative stress. In this study, we cloned a mitochondrial manganese (Mn) SOD (mMnSOD) cDNA from the ridgetail white prawn Exopalaemon carinicauda by using rapid amplification of cDNA ends (RACE) methods. The fulMength cDNA for mMnSOD was 1 014-bp long, containing a 5'-untranslated region (UTR) of 37-bp, a 3'-UTR of 321-bp with a poly (A) tail, and included a 657-bp open reading frame encoding a protein of 218 amino acids with a 16-amino-acid signal peptide. The protein had a calculated molecular weight of 23.87 kDa and a theoretical isoelectric point of 6.75. The mMnSOD sequence included two putative N-glycosylation sites (NHT and NLS), the MnSOD signature sequence 18~DVWEHAYY^87, and four putative Mn binding sites (H48, H96, D180, and H184). Sequence comparison showed that the mMnSOD deduced amino acid sequence of E. carinicauda shared 97%, 95%, 89%, 84%, 82%, 72%, and 69% identity with that ofMacrobrachium rosenbergii, Macrobrachium nipponense, Fenneropeneaus chinensis, Callinectes sapidus, Perisesarma bidens, Danio rerio, and Homo sapiens, resectively. Quantitative real-time RT-PCR analysis showed that mMnSOD transcripts were present in all E. carinicauda tissues examined, with the highest levels in the hepatopancreas. During an ammonia stress treatment, the transcript levels of mMnSOD and cMnSOD were up-regulated at 12 h in hemocytes and at 24 h in the hepatopancreas. As the duration of the ammonia stress treatment extended to 72 h, the transcript levels of mMnSOD and cMnSOD significantly decreased both in hemocytes and hepatopancreas. These findings indicate that the SOD system is induced to respond to acute ammonia stress, and may be involved in environmental stress responses in E. carinicauda. 展开更多
关键词 Exopalaemon carinicauda mitochondrial manganese superoxide dismutase (mMnSOD) cytosolic manganese superoxide dismutase (cMnSOD) CLONING expression
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The first complete mitogenome of Cyclommatus stag beetles(Coleoptera: Lucanidae) with the phylogenetic implications
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作者 刘静 李成功 +1 位作者 游硕 万霞 《Entomotaxonomia》 CSCD 2017年第4期294-299,共6页
The first complete mitogenome of Cyclommatus stag beetles, Cyclommatus vitalisi(Coleoptera: Lucanidae) is sequenced using the next generation sequening. The genomic structure is a closed circular molecule with 17,8... The first complete mitogenome of Cyclommatus stag beetles, Cyclommatus vitalisi(Coleoptera: Lucanidae) is sequenced using the next generation sequening. The genomic structure is a closed circular molecule with 17,853 bp in length, comprising 13 protein-coding genes, 22 transfer RNA genes(t RNAs), 2 ribosomal RNAs(r RNAs) and a control region. The sequence has neither a gene rearrangement nor a non-coding region. The nucleotide composition is A(36. 31%), C(21. 48%), T(31. 20%) and G(11. 01%), with overall AT content of 73. 61%. The phylogenetic analysis of 13 stag beetles and another three scarab beetles show that Cyclommatus vitalisi shares a close ancestry with Lucanus mazama and Lucanus fortunei. 展开更多
关键词 Cyclommatus vitalisi MITOGENOME phylogenomic analysis
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Species identification and phylogenetic analysis of genus Nassarius(Nassariidae)based on mitochondrial genes 被引量:2
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作者 李海涛 林端 +2 位作者 方宏达 朱艾嘉 高阳 《Chinese Journal of Oceanology and Limnology》 SCIE CAS CSCD 2010年第3期565-572,共8页
Genus Nassarius contains many subgenera, such as Zeuxis, Telasco, Niotha, Varicinassa, Plicarcularia, Nassarius s. str. and Reticunassa. On the basis of morphological characteristics of the shell and radula and sequen... Genus Nassarius contains many subgenera, such as Zeuxis, Telasco, Niotha, Varicinassa, Plicarcularia, Nassarius s. str. and Reticunassa. On the basis of morphological characteristics of the shell and radula and sequences of mitochondrial cytochrome oxidase subunit I (COI) and 16S rRNA genes, Nassarius specimens collected from the South China Sea were identified and phylogenetically analyzed. Although Nassarius sp. and Nassarius (Varicinassa) variciferus were morphologically different in their shells, few variations were found among their radular teeth and sequences of mtCOI and mt16S RNA genes. Therefore, Nassarius sp. should be classified as N. (Varicinassa) variciferus. Nassarius (Zeuxis) sp. has only a subtle difference from Nassarius (Zeuxis) algidus on the shell, but it shows obvious differences in radular teeth and DNA sequence, indicating that they are two distinct species. Sequence divergence of mtCOI and mt16S RNA genes within Nassarius species was much lower than that between species, suggesting that these two genes are suitable for Nassarius species identification. Phylogenetic analysis (neighbor-joining and maximum parsimony) based on mtCOI and mt16S rRNA genes revealed the presence of two groups in genus Nassarius and a closest relationship between subgenera Zeuxis and Telasco. Species of subgenus Plicarcularia did not form a single clade. The molecular phylogeny was not congruent with the previous morphological phylogeny. The subgeneric divisions of genus Nassarius appear to be uncertain and unreliable. 展开更多
关键词 NASSARIUS species identification mtCOI gene mt16S rRNA gene
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Effects of α-mangostin on apoptosis induction of human colon cancer 被引量:5
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作者 Ramida Watanapokasin Faongchat Jarinthanan +3 位作者 Yukio Nakamura Nitisak Sawasjirakij Amornmart Jaratrungtawee Sunit Suksamrarn 《World Journal of Gastroenterology》 SCIE CAS CSCD 2011年第16期2086-2095,共10页
AIM:To investigate the effect of α-mangostin on the growth and apoptosis induction of human colon cancer cells.METHODS:The three colorectal adenocarcinoma cell lines tested (COLO 205,MIP-101 and SW 620) were treated ... AIM:To investigate the effect of α-mangostin on the growth and apoptosis induction of human colon cancer cells.METHODS:The three colorectal adenocarcinoma cell lines tested (COLO 205,MIP-101 and SW 620) were treated with α-mangostin to determine the effect on cell proliferation by MTT assay,cell morphology,chromatin condensation,cell cycle analysis,DNA fragmentation,phosphatidylserine exposure and changing of mitochondrial membrane potential.The molecular mechanisms of α-mangostin mediated apoptosis were further investigated by Western blotting analysis including activation of caspase cascade,cytochrome c release,Bax,Bid,p53 and Bcl-2 modifying factor.RESULTS:The highest inhibitory effect of α-mangostin on cell proliferation of COLO 205,MIP-101 and SW 620 were 9.74 ± 0.85 μg/mL,11.35 ± 1.12 μg/mL and 19.6 ± 1.53 μg/mL,respectively.Further study showed that α-mangostin induced apoptotic cell death in COLO 205 cells as indicated by membrane blebbing,chromatin condensation,DNA fragmentation,cell cycle analysis,sub-G1 peak (P < 0.05) and phosphatidylserine exposure.The executioner caspase,caspase-3,the initiator caspase,caspase-8,and caspase-9 were expressed upon treatment with α-mangostin.Further studies of apoptotic proteins were determined by Western blotting analysis showing increased mitochondrial cytochrome c release,Bax,p53 and Bmf as well as reduced mitochondrial membrane potential (P < 0.05).In addition,up-regulation of tBid and Fas were evident upon treatment with α-mangostin (P < 0.01).CONCLUSION:α-Mangostin may be effective as an anti-cancer agent that induced apoptotic cell death in COLO 205 via a link between extrinsic and intrinsic pathways. 展开更多
关键词 α-mangostin APOPTOSIS CASPASES Colon cancer MITOCHONDRIA
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Correlation between mitochondrial TRAP-1 expression and lymph node metastasis in colorectal cancer 被引量:13
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作者 Jing-Yan Gao Bao-Rong Song +1 位作者 Jun-Jie Peng Yuan-Ming Lu 《World Journal of Gastroenterology》 SCIE CAS CSCD 2012年第41期5965-5971,共7页
AIM: To evaluate the effect of mitochondrial tumor ne- crosis factor receptor-associated protein-1 (TRAP-l) on the lymph node metastasis (LNM) in Chinese colorectal cancer (CRC) patients, and develop potential ... AIM: To evaluate the effect of mitochondrial tumor ne- crosis factor receptor-associated protein-1 (TRAP-l) on the lymph node metastasis (LNM) in Chinese colorectal cancer (CRC) patients, and develop potential LNM- associated biomarkers for CRC using quantitative real- time polymerase chain reaction (RT-PCR) analysis. METHODS: Differences in mitochondrial TRAP-1 gene expression between primary CRC with LNM (LNM CRC) and without LNM (non-LNM CRC) were assessed in 96 Chinese colorectal carcinoma samples using quantita- tive RT-PCR analysis, Western blotting, and confirmed with immunohistochemical assay. The relationship between clinicopathological parameters and potential diaclnostic biomarkers was also examined.RESULTS: TRAP-1 was significantly upregulated in LNM CRC compared with non-LNM CRC, which was confirmed by RT-PCR, Western blotting and immuno- histochemical assay. The expression of TRAP-1 in two different metastatic potential human colorectal cancer cell lines, LoVo and HT29, was analyzed with Western blotting. The expression level of TRAP-1 was dramati- cally higher in LoVo than in HT29. Overexpression of TRAP-1 was significantly associated with LNM (90.2% in LNM group vs 22% in non-LNM group, P 〈 0.001), the advanced tumor node metastasis stage (89.1% in LNM group vs 26.9% in non-LNM group, P 〈 0.001), the increased 5-year recurrence rate (82.7% in LNM group vs 22.6% in non-LNM group, P 〈 0.001) and the decreased 5-year overall survival rate (48.4% in LNM vs 83.2% in non-LNM group, P 〈 0.001). Univariate and multivariate analyses indicated that TRAP-1 expression was an independent prognostic factor for recurrence and survival of CRC patients (Hazard ratio of 2.445 in recurrence, P = 0.017; 2.867 in survival, P = 0.028). CONCLUSION: Mitochondria TRAP-1 affects the lymph node metastasis in CRC, and may be a potential bio- marker for LNM and a prognostic factor in CRC. Over- expression of TRAP-1 is a predictive factor for the poor outcome of colorectal cancer patients. 2012 Baishideng. All rights reserved 展开更多
关键词 Colorectal cancer Lymph node metastasis PROGNOSIS Quantitative real-time polymerase chain reaction analysis Hsp90 family Mitochondria tumor necrosis factor receptor-associated protein-1
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Mitochondrial DNA sequence analysis of two mouse hepatocaranoma cell lines
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作者 Ji-GangDai XiaLei Jia-XinMin Guo-QiangZhang HongWei 《World Journal of Gastroenterology》 SCIE CAS CSCD 2005年第2期264-267,共4页
AIM: To study genetic difference of mitochondrial DMA (mtDNA) between two hepatocarcinoma cell lines (Hca-F and Hca-P) with diverse metastatic characteristics and the relationship between mtDNA changes in cancer cells... AIM: To study genetic difference of mitochondrial DMA (mtDNA) between two hepatocarcinoma cell lines (Hca-F and Hca-P) with diverse metastatic characteristics and the relationship between mtDNA changes in cancer cells and ttieir oncogenic phenotype. METHODS: Mitochondrial DMA D-loop, tRNAMet+Glu+Ile and ND3 gene fragments from the hepatocarcinoma cell lines with 1100,1126 and 534 bp in length respectively were analysed by PCR amplification and restriction fragment length polymorphism techniques. The D-loop 3′ end sequence of the hepatocarcinoma cell lines was determined by sequencing. RESULTS: No amplification fragment length polymorphism and restriction fragment length polymorphism were observed in tRNAMet+Glu+Ile, ND3 and D-loop of mitochondrial DNA of the hepatocarcinoma cells. Sequence differences between Hca-F and Hca-P were found in mtDNA D-loop. CONCLUSION: Deletion mutations of mitochondrial DNA restriction fragment may not play a significant role in carcinogenesis. Genetic difference of mtDNA D-loop between Hca-F and Hca-P, which may reflect the environmental and genetic influences during tumor progression, could be linked to their tumorigenic phenotypes. 展开更多
关键词 HepatDcarcinoma Mtochondrial DNA Base Sequence
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The Taxonomic Status of Gymnura bimaculata and G. japonica: Evidence from Mitochondrial DNA Sequences
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作者 Anglv Shen Chunyan Ma Yong Ni Zhaoli Xu Lingbo Ma 《Journal of Life Sciences》 2012年第1期9-13,共5页
Japanese butterfly ray Gymnura japonica from twinspot butterfly ray G. bimaculata based on a pair of white spots behind eyes or not, which was not reliable. To clarify the taxonomic status of G. japonica and G. bimacu... Japanese butterfly ray Gymnura japonica from twinspot butterfly ray G. bimaculata based on a pair of white spots behind eyes or not, which was not reliable. To clarify the taxonomic status of G. japonica and G. bimaculata, the nucleotide variation between the two butterfly rays was examined using mitochondrial DNA sequence comparisons. Approximately 585 bp of 16S ribosomal RNA (rRNA) and 1,128 bp cytochrome b (cyt b) genes were sequenced from representatives of two butterfly rays species in East China Sea. The results showed that there were the same sequences of 16S rRNA gene between two butterfly rays; six sites were variable among two butterfly rays of cyt b genes, the proportion of polymorphie loci was 0.53%, and two haplotypes were defined which genetic distance was 0.5%. Combined with the morphological character and the analysis of mtDNA sequence indicated that twinspot butterfly ray G. bimaculata was a synonym of Japanese butterfly ray G. japonica. 展开更多
关键词 16S rRNA cyt b morphological character taxonomic status butterfly ray.
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Phylogeny and species differentiation of Mollitrichosiphum spp. (Aphididae, Greenideinae) based on mitochondrial CO1 and Cyt b genes 被引量:2
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作者 Ruiling ZHANG Xiaolei HUANG +1 位作者 Liyun JIANG Gexia QIAO 《Current Zoology》 SCIE CAS CSCD 北大核心 2011年第6期806-815,共10页
Phylogenetic analyses based on mitochondrial genes were conducted to reconstruct species relationships within the aphid genus MoUitrichosiphum (Aphididae, Greenideinae). MP and Bayesian analysis results using COI an... Phylogenetic analyses based on mitochondrial genes were conducted to reconstruct species relationships within the aphid genus MoUitrichosiphum (Aphididae, Greenideinae). MP and Bayesian analysis results using COI and Cyt b datasets, and combined MP, ML and Bayesian analysis of both were consistent with a morphologically supported monophyly. Subdivision of the genus into two subgenera was strongly supported. Samples of each included species form monophyletic clade, respectively; and the result implied the valid status of related species in this genus. These results suggest some surprising hypotheses regarding the phylogeography of the genus: the uplift of the Tibetan Plateau, reorganization of major fiver catchments and the isolation of Hainan Island were probably important factors contributing to the diversification of species in this genus . 展开更多
关键词 Mollitrichosiphum Geographical barrier PHYLOGENY Tibetan Plateau Hainan Island
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Diversification of Sisorid catfishes(Teleostei: Siluriformes)in relation to the orogeny of the Himalayan Plateau 被引量:4
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作者 Chuanjiang Zhou Xuzhen Wang +4 位作者 Xiaoni Gan Yaping Zhang David M.Irwin Richard L.Mayden Shunping He 《Science Bulletin》 SCIE EI CAS CSCD 2016年第13期991-1002,共12页
Abstract Sisorid catfishes are primarily limited in distribution to rivers of the Himalayan region and Tibetan Plateau. These species have external morphologies that are adapted for extremely fast-flowing riverine sys... Abstract Sisorid catfishes are primarily limited in distribution to rivers of the Himalayan region and Tibetan Plateau. These species have external morphologies that are adapted for extremely fast-flowing riverine systems. Given the diversity of the group and the above qualities of these catfishes, this lineage serves as an ideal group for inferring the geological history of this region based on their phylogenetic relationships reflecting evolu- tionary history. We sequenced the complete mitochondrial genome and four nuclear genes of representative sisorids distributed across river systems in China. Phylogenetic analyses strongly support the monophyly of the Sisoridae and the glyptosternoids. An analysis of the reconstructed ancestral states derived from inferred genealogical relationships suggests that the evolution of this lineage was accompanied by convergent evolution in morphological traits that were presumably in response to environmental pressure involving the rapid flowing river system that were generated during the uplift of the Tibetan Plateau (UTP). Molecular dating indicates that the Chinese sisorids and the glyptosternoids originated at the later Miocene (~ 10.9-9.8 Mya), and with further biogeographic analyses indicates that the species of Sisoridae likely originated from a widely distributed ancestor. Moreover, the divergence of the Sisoridae in China can be divided into two phases consis- tent with the UTP. All of these results indicate that the diversification and dispersal events in this lineage occurred as a result of drainage systems formed during and after the UTP in the late Miocene and Quaternary periods. 展开更多
关键词 Phylogeny. Diversification and dispersal.Biogeography - Divergence time estimation ~ TibetanPlateau ~ Sisoridae ~ Catfish
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Phylogenetic analysis based on mitochondrial DNA sequences of wild rats, and the relationship with Seoul virus infection in Hubei, China 被引量:2
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作者 Dong-Ying Liu Jing Liu +4 位作者 Bing-Yu Liu Yuan-Yuan Liu Hai-Rong Xiong Wei Hou Zhan-Qiu Yang 《Virologica Sinica》 SCIE CAS CSCD 2017年第3期235-244,共10页
Seoul virus(SEOV), which is predominantly carried by Rattus norvegicus, is one of the major causes of hemorrhagic fever with renal syndrome(HFRS) in China. Hubei province, located in the central south of China, has ex... Seoul virus(SEOV), which is predominantly carried by Rattus norvegicus, is one of the major causes of hemorrhagic fever with renal syndrome(HFRS) in China. Hubei province, located in the central south of China, has experienced some of the most severe epidemics of HFRS. To investigate the mitochondrial DNA(mt DNA)-based phylogenetics of wild rats in Hubei, and the relationship with SEOV infection, 664 wild rats were captured from five trapping sites in Hubei from2000–2009 and 2014–2015. Using reverse-transcription(RT)-PCR, 41(6.17%) rats were found to be positive for SEOV infection. The SEOV-positive percentage in Yichang was significantly lower than that in other areas. The mt DNA D-loop and cytochrome b(cyt-b) genes of 103 rats were sequenced.Among these animals, 37 were SEOV-positive. The reconstruction of the phylogenetic relationship(based on the complete D-loop and cyt-b sequences) allowed the rats to be categorized into two lineages, R. norvegicus and Rattus nitidus, with the former including the majority of the rats. For both the D-loop and cyt-b genes, 18 haplotypes were identified. The geographic distributions of the different haplotypes were significantly different. There were no significant differences in the SEOVpositive percentages between different haplotypes. There were three sub-lineages for the D-loop,and two for cyt-b. The SEOV-positive percentages for each of the sub-lineages did not significantly differ. This indicates that the SEOV-positive percentage is not related to the mt DNA D-loop or cyt-b haplotype or the sub-lineage of rats from Hubei. 展开更多
关键词 Seoul virus(SEOV) Rattus norvegicus mitochondrial DNA phylogenetic analysis
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Genealogy and phylogeography of Cyprinid fish Labeo rohita (Hamilton, 1822) inferred from ATPase 6 and 8 mitochondrial DNA gene analysis 被引量:1
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作者 Rupesh K. LUHARIYA Kuldeep K. LAL +7 位作者 Rajeev K. SINGH Vindhya MOHINDRA Arti GUPTA Prachi MASIH Arvind K. DWIVEDI Rakhi DAS U. K. CHAUHAN J. K. JENA 《Current Zoology》 SCIE CAS CSCD 2014年第4期460-471,共12页
ATPase 6/8 gene (842 bp) of mitochondrial DNA was sequenced in Labeo rohita samples (n = 253) collected from nine rivers belonging to four river basins; Indus, Ganges, Brahmaputra and Mahanadi. Analysis revealed 4... ATPase 6/8 gene (842 bp) of mitochondrial DNA was sequenced in Labeo rohita samples (n = 253) collected from nine rivers belonging to four river basins; Indus, Ganges, Brahmaputra and Mahanadi. Analysis revealed 44 haplotypes with high haplotype diversity (Hd) 0.694 and low nucleotide diversity (π) 0.001. The within population variation was larger (83.44%) than among population differences (16.56%). The mean Fsv value (0.166; P 〈 0.05) for overall populations revealed moderate level of genetic structuring in the wild L. rohita populations. The haplotype network presented a single clade for wild L. rohita population, from different rivers. Negative values for Fu's index (Fs), mismatch distribution analysis indicated period of expansion in L. rohita population. The time after recent expansion was estimated for each population, between 0.042 to 0.167 mya. The pattern of Isolation by Distance (IBD) was not significant (r = -0.113, P 〈 0.287), when all the sampling locations were compared (Mantel test), however, when an outlier (Indus, Brahmaputra and Mahanadi) was removed from the whole population set, a clear positive correlation between pairwise Fsv and geographic distance (Km) was seen. The analysis of data demonstrated that ATPase6/8 gene polymorphism is a potential marker to understand genetic population structure of wild L. rohita existing in different rivers. The study identified population substructure in wild L. rohita with common ancestral origin [Current Zoology 60 (4): 460--471, 2014]. 展开更多
关键词 Labeo rohita ATPase6/8 MTDNA Polymorphism Genetic Divergence India
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Phylogenetic relationships and estimation of divergence times among Sisoridae catfishes 被引量:5
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作者 YU MeiLing HE ShunPing 《Science China(Life Sciences)》 SCIE CAS 2012年第4期312-320,共9页
Nineteen taxa representing 10 genera of Sisoridae were subjected to phylogenetic analyses of sequence data for the nuclear genes Plagl2 and ADNP and the mitochondrial gene cytochrome b. The three data sets were analyz... Nineteen taxa representing 10 genera of Sisoridae were subjected to phylogenetic analyses of sequence data for the nuclear genes Plagl2 and ADNP and the mitochondrial gene cytochrome b. The three data sets were analyzed separately and combined into a single data set to reconstruct phylogenetic relationships among Chinese sisorids. Both Chinese Sisoridae as a whole and the glyptosternoid taxa formed monophyletic groups. The genus Pseudecheneis is likely to be the earliest diverging extant genus among the Chinese Sisoridae. The four Pareuchiloglanis species included in the study formed a monophyletic group. Glaridoglanis was indicated to be earliest diverging glyptosternoid, followed by Glyptosternon maculatum and Exostoma labiatum. Our data supported the conclusion that Oreoglanis and Pseudexostoma both formed a monophyletic group. On the basis of the fossil record and the results of a molecular dating analysis, we estimated that the Sisoridae diverged in the late Miocene about 12.2 Mya. The glyptosternoid clade was indicated to have diverged, also in the late Miocene, about 10.7 Mya, and the more specialized glyptosternoid genera, such as Pareuchiloglanis, originated in the Pleistocene (within 1.9 Mya). The speciation of glyptosternoid fishes is hypothesized to be closely related with the uplift of the Qinghai-Tibet Plateau. 展开更多
关键词 SISORIDAE glyptosternoids phylogenetic monophyly SPECIATION
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Progress in the Researches on Insect Mitochondrial Genome and Analysis of Gene Order
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作者 Hu Li Jianyu Gao Haiyu Liu Wanzhi Cai 《Science Foundation in China》 CAS 2009年第2期39-45,共7页
Insect mitochondrial genome is a double-stranded circular genomes which range from 14 503 bp to 19 571 bp in size.Nearly all the sequenced insect mitochondrial genomes encode 37 genes:two for rRNAs,13 for proteins and... Insect mitochondrial genome is a double-stranded circular genomes which range from 14 503 bp to 19 571 bp in size.Nearly all the sequenced insect mitochondrial genomes encode 37 genes:two for rRNAs,13 for proteins and 22 for tRNAs.This review compares and summarizes the features of complete mitochondrial genomes from 175 sequenced species of insects in 22 orders.The genomic organization, contents,gene order,and rearrangements of gene order are analyzed. 展开更多
关键词 INSECT mitochondrial genome geneorder PHYLOGENY
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