本文对来自PDB (Protein Data Bank)数据库的蛋白质-RNA复合物结构构建了非冗余非核糖体数据库(694个结构),并对此数据库统计了蛋白质和RNA序列及二级结构的界面偏好性.结果发现,蛋白质β折叠、310-helix和RNA未配对核苷酸,尤其是未配...本文对来自PDB (Protein Data Bank)数据库的蛋白质-RNA复合物结构构建了非冗余非核糖体数据库(694个结构),并对此数据库统计了蛋白质和RNA序列及二级结构的界面偏好性.结果发现,蛋白质β折叠、310-helix和RNA未配对核苷酸,尤其是未配对中空间排列不规整的核苷酸,具有显著的界面偏好性.据此,对二级结构进行归类,建立了考虑序列和二级结构信息的60×12氨基酸-核苷酸成对偏好势,并将其作为打分函数用于蛋白质-RNA对接中近天然结构的筛选.结果表明,该60×12统计势的打分成功率为65.77%,优于考虑蛋白质或RNA二级结构信息的统计势,及我们小组之前在251个结构上构建的60×8*统计势.该工作有助于加深对蛋白质-RNA特异性识别的理解,可推动复合物结构预测的进展.展开更多
Schroedinger's wave equation is solved in Thomas-Fermi potential including the self-interaction modification of elctrons for arbitrary matter density and temperature,In order to describe relativistic effects,the m...Schroedinger's wave equation is solved in Thomas-Fermi potential including the self-interaction modification of elctrons for arbitrary matter density and temperature,In order to describe relativistic effects,the mass-velocity correction,the Darwin correction and the spin-orbit coupling terms are included in the wave equation.Calculations are presented for the Fe^26 and Rb^37 atoms at a few temperatures and matter densities.Comparisons of present results with other more accurate one^[9] are given in Table.The data obtained by the present method are not bad.展开更多
文摘本文对来自PDB (Protein Data Bank)数据库的蛋白质-RNA复合物结构构建了非冗余非核糖体数据库(694个结构),并对此数据库统计了蛋白质和RNA序列及二级结构的界面偏好性.结果发现,蛋白质β折叠、310-helix和RNA未配对核苷酸,尤其是未配对中空间排列不规整的核苷酸,具有显著的界面偏好性.据此,对二级结构进行归类,建立了考虑序列和二级结构信息的60×12氨基酸-核苷酸成对偏好势,并将其作为打分函数用于蛋白质-RNA对接中近天然结构的筛选.结果表明,该60×12统计势的打分成功率为65.77%,优于考虑蛋白质或RNA二级结构信息的统计势,及我们小组之前在251个结构上构建的60×8*统计势.该工作有助于加深对蛋白质-RNA特异性识别的理解,可推动复合物结构预测的进展.
文摘Schroedinger's wave equation is solved in Thomas-Fermi potential including the self-interaction modification of elctrons for arbitrary matter density and temperature,In order to describe relativistic effects,the mass-velocity correction,the Darwin correction and the spin-orbit coupling terms are included in the wave equation.Calculations are presented for the Fe^26 and Rb^37 atoms at a few temperatures and matter densities.Comparisons of present results with other more accurate one^[9] are given in Table.The data obtained by the present method are not bad.
