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随机走步软聚类识别蛋白质网交叠功能模块
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作者 王红 王希诚 《计算机工程与应用》 CSCD 北大核心 2011年第9期4-7,共4页
认定蛋白质交互网中的功能模块对于理解细胞的组织结构,处理过程及其功能都是至关重要的。由于一个蛋白质可能具有多重功能因此蛋白质功能模块可能会相互交叠。然而,目前已有的一些识别功能模块的软聚类算法有如下两个缺陷:一是一些算... 认定蛋白质交互网中的功能模块对于理解细胞的组织结构,处理过程及其功能都是至关重要的。由于一个蛋白质可能具有多重功能因此蛋白质功能模块可能会相互交叠。然而,目前已有的一些识别功能模块的软聚类算法有如下两个缺陷:一是一些算法需要阈值来截断聚类;二是有些算法需要预设聚类数目。为了克服这两个缺陷,提出了随机走步软聚类识别算法来认定蛋白质交互网中的交叠功能模块。实验结果表明该算法在无需任何参数的情况下能发现一些重要的交叠功能模块。 展开更多
关键词 蛋白质交互网 功能模块 随机走步
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The retromer component SNX6 interacts with dynactin p150Glued and mediates endosome-to-TGN transport 被引量:8
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作者 Zhi Hong Yanrui Yang +4 位作者 Cheng Zhang Yang Niu Ke Li Xi Zhao Jia-JiaLiu 《Cell Research》 SCIE CAS CSCD 2009年第12期1334-1349,共16页
The retromer is a protein complex that mediates retrograde transport of transmembrane cargoes from endosomes to the trans-Golgi network (TGN). It is comprised of a cargo-selection subcomplex of Vps26, Vps29 and Vps3... The retromer is a protein complex that mediates retrograde transport of transmembrane cargoes from endosomes to the trans-Golgi network (TGN). It is comprised of a cargo-selection subcomplex of Vps26, Vps29 and Vps35 and a membrane-binding coat subcomplex of sorting nexins (SNXs). Previous studies identified SNX1/2 as one of the components of the SNX subcomplex, and SNX5/6 as candidates for the second SNX. How the retromer-associated cargoes are recognized and transported by molecular motors are largely unknown. In this study, we found that one of SNX1/2's dimerization partners, SNX6, interacts with the p150Gued subunit of the dynein/dynactin motor complex. We present evidence that SNX6 is a component of the retromer, and that recruitment of the motor complex to the membrane-associated retromer requires the SNX6-pl50Gued interaction. Disruption of the SNX6-pl50Glued interaction causes failure in formation and detachment of the tubulovesicular sorting structures from endosomes and results in block of CI-MPR retrieval from endosomes to the TGN. These observations indicate that in addition to SNX1/2, SNX6 in association with the dynein/dynactin complex drives the formation and movement of tubular retrograde intermediates. 展开更多
关键词 sorting nexin RETROMER p 150Glued retrograde transport dynein/dynactin CI-MPR
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