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基于球极坐标划分的蛋白质结构相似性比较 被引量:1
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作者 邹北骥 张琦 梁鹿鸣 《计算机辅助设计与图形学学报》 EI CSCD 北大核心 2009年第5期606-611,共6页
为了指导新药探索,减少耗费过高的实验次数,需要有一个准确、快速的分子相似性判定方法来选择待比较的分子.为此提出一种蛋白质结构相似性比较方法,使用空间球极坐标3个分量划分蛋白质所在区域,得到蛋白质基本组成元素的空间密度特征,... 为了指导新药探索,减少耗费过高的实验次数,需要有一个准确、快速的分子相似性判定方法来选择待比较的分子.为此提出一种蛋白质结构相似性比较方法,使用空间球极坐标3个分量划分蛋白质所在区域,得到蛋白质基本组成元素的空间密度特征,进而判定2个蛋白质结构的相似性.实验结果表明,该方法可作为各种结构蛋白质相似性比较的辅助手段,不仅能较好地反映蛋白质分子的空间结构特征,而且还有令人满意的时间复杂性,对大分子的相似性比较及进一步分类将有重要意义. 展开更多
关键词 蛋白质分子结构分析 相似性比较 球极坐标
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Molecular Cloning and Expression of PoIR2,a Novel Gene Involved in Immune Response in Japanese Flounder (Paralichthys olivaceus)
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作者 LI Shuo LI Chunmei WANG Xubo WANG Yanan LIU Zhipeng ZHAI Teng ZHANG Quanqi 《Journal of Ocean University of China》 SCIE CAS 2010年第1期59-64,共6页
A novel immune-related gene was expressed in Japanese flounder (Paralichthys olivaceus) injected with Vibrio anguillarum. The complete cDNA contained a 169 bp 5'UTR, a 336 bp open reading frame (ORF) encoding 111... A novel immune-related gene was expressed in Japanese flounder (Paralichthys olivaceus) injected with Vibrio anguillarum. The complete cDNA contained a 169 bp 5'UTR, a 336 bp open reading frame (ORF) encoding 111 amino acids and a 556bp 3'UTR. Six exons and five introns were identified in the PoIR2 gene. Blastp similarity comparison showed its encoding protein had 50% similarity to Danio rerio neuromedin S (NMS), but further alignment indicated they did not have NMS C-terminal conservational signature domain. So it was not defined as an NMS homologue. Protein structure analysis indicated it had a 26aa sig- nal peptide and was a secretory pathway protein. RT-PCR demonstrated that the expression of PoIR2 was quickly induced and drastically increased in liver, kidney, spleen, gills, intestine, heart, and skeletal muscle after infected with V. anguillarurn. These results indicated that the PolR2 might play some important role in Japanese flounder immune response system. This gene was named PolR2 (P.olivaceus immune-related gene 2, GenBank accession number: EU224372). The mature PoIR2 peptide was expressed in BL21 (DE3) pLysS using pET-32a(+) vector and a great part of the recombinant mature peptide existed as soluble type. 展开更多
关键词 Paralichthys olivaceus Vibrio anguillarum immune-related gene (PoIR2) tissue expression prokaryotic expression
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