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基于WGCNA挖掘天津猴鸡裸颈性状相关基因
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作者 吴鹏飞 夏树立 +2 位作者 于海涛 赵向华 王康 《江苏农业学报》 CSCD 北大核心 2024年第5期881-889,共9页
天津猴鸡是中国珍贵的裸颈鸡遗传资源,为在全基因组范围内探究其裸颈发育相关基因,本研究采集天津猴鸡杂交F_(1)代裸颈鸡和常羽鸡颈部皮肤组织用于转录组测序。加权基因共表达网络分析(WGCNA)结果显示,识别到的10个基因模块中只有蓝绿色... 天津猴鸡是中国珍贵的裸颈鸡遗传资源,为在全基因组范围内探究其裸颈发育相关基因,本研究采集天津猴鸡杂交F_(1)代裸颈鸡和常羽鸡颈部皮肤组织用于转录组测序。加权基因共表达网络分析(WGCNA)结果显示,识别到的10个基因模块中只有蓝绿色(turquoise)和蓝色(blue)基因模块与裸颈表型显著相关,共计583个基因;GO功能富集分析富集到脂滴组织、甘油三酯储存负调控以及肌肉收缩等脂肪和肌肉相关生物学过程等条目;KEGG通路分析也富集到多条脂肪代谢相关通路,包括PPAR信号通路和甘油酯代谢等;蛋白质互作网络分析结果显示ACTN2基因编码的蛋白质的连通性最高,其次是MYL10基因编码的蛋白质,另外,还发现多个密切参与毛囊发育的基因,包括SOX9和PPARGC等。本研究结果将为进一步揭示并完善鸡裸颈的形成和发育奠定基础,同时对天津猴鸡的保护、开发和利用具有重要意义。 展开更多
关键词 天津猴鸡 裸颈性状 加权基因共表达网络分析(WGCNA)
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鸡裸颈基因研究进展 被引量:1
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作者 安建勇 王文杰 《中国家禽》 北大核心 2018年第5期47-50,共4页
裸颈鸡主要分布在热带、亚热带和赤道地区,尤其是高温潮湿气候地区。羽毛覆盖率比常羽鸡低,具有明显的抗热应激特性。基因定位研究表明,裸颈基因(Na)位于3号染色体长臂770 kb的一个区段内,基因功能研究确定为一73 kb插入导致BMP12表达... 裸颈鸡主要分布在热带、亚热带和赤道地区,尤其是高温潮湿气候地区。羽毛覆盖率比常羽鸡低,具有明显的抗热应激特性。基因定位研究表明,裸颈基因(Na)位于3号染色体长臂770 kb的一个区段内,基因功能研究确定为一73 kb插入导致BMP12表达量上调而产生。裸颈是胚胎期羽毛发育调节的结果,羽毛发育通过反馈-扩散的行为模式进行自组织,激活因子-抑制因子的相互作用强弱最终确定了羽毛分布的密度,WNT/β-catenin和FGF为激活因子,BMP基因家族为羽毛发育的抑制因子,但这两大通路上下游起作用的相关基因并不清晰,仍需要进一步研究。文章对裸颈鸡的性状特征、裸颈基因的定位以及裸颈性状形成的分子机理进行了综述,旨在为裸颈鸡的开发和研究指明方向。 展开更多
关键词 裸颈 基因
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鸡裸颈基因(Na)与某些经济性状的关系 被引量:2
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作者 胡刚安 《广东畜牧兽医科技》 1993年第1期44-45,共2页
鸡的裸颈(Naked Neck)属于一种遗传性状,常受染色体上的1对基因所控制,其中裸颈基因(Na)对非裸颈基因(na)为不完全显性。Na 基因位于鸡第1染色体上,同 P(豆冠)和 O(青壳蛋)基因连锁,然而,这种连锁是松散的(Bitgood 等,1980)。
关键词 裸颈 基因 经济性状
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基于简化基因组测序的天津猴鸡遗传进化研究 被引量:3
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作者 夏树立 周成浩 +6 位作者 赵向华 于海涛 张会永 殷建玫 薛倩 韩威 李国辉 《中国家禽》 北大核心 2022年第7期1-5,共5页
为从基因组水平探究天津猴鸡群体遗传进化过程中的选择信号,补充完善地方鸡种选择信号图谱,发掘天津猴鸡的重要种质特性基因,试验根据纬度分布、遗传关系等条件筛选包括天津猴鸡群体在内的20个地方鸡种及2个引进鸡品种作为研究对象,利... 为从基因组水平探究天津猴鸡群体遗传进化过程中的选择信号,补充完善地方鸡种选择信号图谱,发掘天津猴鸡的重要种质特性基因,试验根据纬度分布、遗传关系等条件筛选包括天津猴鸡群体在内的20个地方鸡种及2个引进鸡品种作为研究对象,利用简化基因组测序技术开展基因组测序,分析比较天津猴鸡群体与其他鸡种群体的遗传差异,并对进化过程中受到选择的基因进行基因功能注释。结果显示:在天津猴鸡群体中检测出265869个SNP标记;遗传结构上天津猴鸡群体与狼山鸡等聚为一类,亲缘关系较近;受选择基因主要参与氨基酸生物合成、细胞内信号转导以及神经系统发育等通路或生物学过程;检测到6个与种质特性相关的受选择基因,与神经系统发育、激素调节和抗热应激等生理功能紧密相关。研究结果部分揭示了天津猴鸡的裸颈性状形成和抗热应激特性,为天津猴鸡的保护和种质特性评价提供重要理论依据。 展开更多
关键词 天津猴鸡 裸颈性状 遗传多样性 选择信号
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Mechanism of anti-tumor effect of HIF-1α silencing on cervical cancer in nude mice 被引量:1
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作者 Yanxiang Cheng Wen Fan Bingshu Li Qin Wang Min Hu Li Hong 《The Chinese-German Journal of Clinical Oncology》 CAS 2010年第7期416-421,共6页
Objective: The aim of our study was to observe the anti-tumor effect of silencing the expression of HIF-1α on cervical cancer in nude mice and to explore its mechanism of action. Methods: Human cervical cancer cell... Objective: The aim of our study was to observe the anti-tumor effect of silencing the expression of HIF-1α on cervical cancer in nude mice and to explore its mechanism of action. Methods: Human cervical cancer cell line Siha cells were divided into 3 groups: mock control group, control group transfected with scrambled sequence plasmid, and experimental group transfected with pU-HIF-la-shRNA eukaryotic expression plasmid. Cultured cells of the three groups were inoculated in nude mice to establish cervical cancer-bearing nude mice. HIF-la RNAi assay was performed to evaluate the tumor-suppressive effect of HIF-1α silencing on cervical cancer-bearing nude mice. Immunohistochemistry and Western blot were used to observe the distribution and protein expression of HIF-1α and GLUT1, while RT-PCR was adopted to detect the gene expression of HIF-1α, GLUTI and HK I1. The product of glycolysis (tactic acid) and apoptosis in tumor cells were detected by colorimetry and semi-quantitative TUNEL staining, respectively. Results: The tumor growth in experimental group was significantly slower than that in the two control groups (P 〈 0.05). In the 50th day after transplantation, the tumor weight in the experimental group was (1.90 ± 0.28) g, significantly lower than (2.95 ± 0.77) g in the control group and (2.54 ± 0.56) g in the mock group (P 〈 0.01). In the experimental group, the gene and protein levels of HIF-1α were 0.45 ± 0.04 and 1.25 ± 0.92, and the levels of GLUT1 were 0.32 ± 0.02 and 1.25 ± 0.48, respectively. Both indicators in HIF-la and GLUT1 were lower than that in the two control groups (P 〈 0.05). The expression levels of HK Ⅱ gene and lactic acid in the experimental group were lower than that in the two control groups (P 〈 0.05), but the apoptotic cells were much more numerous in the experimental group than that in matched control groups (P 〈 0.01). Conclusion: The 9ene therapy by siRNAtargeted silencing of HIF-1α may down-regulate its downstream genes GLUT1 and HK Ⅱ expression, therefore, to reduce the tumor glycolysis activity and promote tumor cell apoptosis, and exert a tumor-suppressing effect in vivo. 展开更多
关键词 cervical neoplasms HIF-1Α GLUTI RNAi technique nude mice
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Effects of the anti-tumor composition ofthe acetoacetate extract of vitex negundoseed on the growth of human cervical carcinomaxenografts in nude mice 被引量:2
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作者 Yanlin Cai Zhongdong Chen +3 位作者 Aiqiong Tang Bin Jiang Zhaohua Fan Jun Bai 《The Chinese-German Journal of Clinical Oncology》 CAS 2014年第3期105-109,共5页
Objective: The aim of our study was to investigate the effects of the anti-tumor composition of the acetoacetate extract of Vitex Negundo Seed (EVn-50) on the growth of human cervical carcinoma HeLa cells xenograft... Objective: The aim of our study was to investigate the effects of the anti-tumor composition of the acetoacetate extract of Vitex Negundo Seed (EVn-50) on the growth of human cervical carcinoma HeLa cells xenografts in nude mica and its possible molecular mechanism. Methods: Models of human cervical cancer HeLa cells xenografts transplanted subcuta- neously in nude mice were established and randomly divided into 7 groups (each group including 5 nude mice): saline group, Taxol group, EVn-50 group, comp-6 group, comp-7 group, comp-8 group and comp-10 group. The volume and weight of Xe- nograts were observed and compared. The alteration of the weight of nude mice, and the change of serum levels ofLDH, ALT, Cr and WBC counts were examined and compared. The apoptotic rate of human cervical carcinoma HeLa cells xenografts was analyzed by FCM. The expressions of P53 and Bcl-2 proteins of HeLa cells xenografts were determined by Western blot- ting. Results: EVn-50 and its fractionated extracts could significantly suppress the increasing volume and weight of human cervical carcinoma HeLa cells xenografts in nude mice models in time-dependent manner, yet had no significant effect on the weight of nude mice, the serum levels of LDH, ALT, Cr and WBC were counted. When the xenografts were treated with EVn-50 and its fractionated extracts for 16 days, the apoptotic rate of xenografts cells were significantly increased, and the expression of P53 protein was up-regulated and protein level of Bcl-2 was decreased. Conclusion: EVn-50 and its fractionated extracts could suppress the growth of human cervical carcinoma HeLa cells xenografts in nude mice, which may be related to its pro- motion on xenografts cells apoptosis through down-regulation of Bcl-2 expressionPand activation of P53 expression. 展开更多
关键词 cervical cancer EVn-50 XENOGRAFTS apoptosis
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