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从中国对虾ESTs中筛选微卫星标记的研究 被引量:38
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作者 徐鹏 周令华 +1 位作者 田丽萍 相建海 《水产学报》 CAS CSCD 北大核心 2003年第3期213-218,共6页
利用生物信息学方法在含有10446个中国对虾ESTs的数据库中进行微卫星序列的筛选,共发现微卫星序列229个,占整个ESTs数据库的2.19%,其中含双碱基重复序列146个和3碱基重复序列58个,分别占在ESTs数据库中发现微卫星序列总数的63.76%和25.3... 利用生物信息学方法在含有10446个中国对虾ESTs的数据库中进行微卫星序列的筛选,共发现微卫星序列229个,占整个ESTs数据库的2.19%,其中含双碱基重复序列146个和3碱基重复序列58个,分别占在ESTs数据库中发现微卫星序列总数的63.76%和25.33%,大部分发现的微卫星序列均为Perfect形式的重复序列。根据筛选得到的微卫星序列设计并合成引物19对进行多态性检测,在有扩增产物的16对引物中,首次筛选得到8个中国对虾微卫星标记,并对这些微卫星标记进行了等位基因频率、观测杂合度、期望杂合度、PIC值等统计学指标的评价。结果表明,在8个微卫星位点上,等位基因的数目从5到15不等,等位基因长度从165~305bp,期望杂合度和多态性信息含量分别为0.59到0.89和0.56到0.88,表明这8个中国对虾微卫星标记完全适合于遗传分析。 展开更多
关键词 中国对虾 ESTS 微卫星标记 生物信息学 微卫星序列 等位基因频率 观测杂合度 期望
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锦州地区东北林蛙群体遗传多样性分析 被引量:2
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作者 于潇潇 赵世伟 +1 位作者 张小茶 张守纯 《当代畜牧》 2013年第1期38-41,共4页
采用微卫星技术分析辽宁锦州地区东北林蛙野生群体的遗传多样性,利用8对微卫星引物对林蛙群体37个个体进行PCR扩增,结果共检测到25个等位基因,大小在270~612bp之间,平均等位基因数量(NA)为3.375,平均观测杂合度(HO)为0.6356,平均期望... 采用微卫星技术分析辽宁锦州地区东北林蛙野生群体的遗传多样性,利用8对微卫星引物对林蛙群体37个个体进行PCR扩增,结果共检测到25个等位基因,大小在270~612bp之间,平均等位基因数量(NA)为3.375,平均观测杂合度(HO)为0.6356,平均期望杂合度(HE)为0.5846,平均多态信息含量(PIC)为0.5681,同时得到了两个杂合度较高的基因位点RsyD25和RsyD88。研究表明,该野生型群体的多态性良好,不存在退化现象。同时确定了杂合位点较多的个体,可以作为亲本在人工繁殖时使用。本研究丰富了野生型林蛙遗传多样性的数据,并为林蛙养殖过程中的选种提供了一定的理论依据。 展开更多
关键词 东北林蛙 遗传多样性 微卫星 等位基因数 观测杂合度 期望 多态信息含量
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Relationships between Genetic Diversity of Vascular Plant Species and Climate Factors
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作者 TAN Jingfang WAN Jizhong +1 位作者 LUO Fangli YU Feihai 《Journal of Resources and Ecology》 CSCD 2018年第6期663-672,共10页
Genetic diversity is crucial for plants to respond to global climate change,and exploring relationships between genetic diversity and climatic factors may help predict how global climate change will shape the genetic ... Genetic diversity is crucial for plants to respond to global climate change,and exploring relationships between genetic diversity and climatic factors may help predict how global climate change will shape the genetic diversity of plants in the future.So far,however,the extent and magnitude of the impact of climatic factors on the genetic diversity of plants has not been clarified.We collected data from 68published papers on two widely used measures of genetic diversity of populations (average expected heterozygosity (He)and average observed heterozygosity (Ho))and on localities of populations of 79vascular plants,and extracted data on 19 climatic factors from WorldClim.We then explored the relationships between measures of genetic diversity and climatic factors using linear regressions.He of plant populations was significantly correlated with climatic factors in 58.7%(44)of the 75 species that used He as a measure of genetic diversity,and Ho was correlated with climatic factors in 65.1% (41)of the 63 species that used this genetic diversity measure.In general,Mean Temperature of Wettest Quarter, Precipitation Seasonality,Precipitation of Driest Quarter and Temperature Seasonality played a vital role in shaping He,and Ho was mostly correlated with Precipitation of Warmest Quarter,Mean Temperature of Wettest Quarter, Precipitation of Driest Quarter and Precipitation of Driest Month.Also,the proportion of the significant correlations between genetic diversity of populations and climatic factors was higher for woody than for herbaceous species, and different climatic factors played different roles in shaping genetic diversity of these two growth forms.Our results suggest that climate may play an important role in shaping genetic diversity of plant populations,that climatic change in the future may alter genetic diversity of plants,and that genetic diversity of different plant forms may respond to climatic change differently. 展开更多
关键词 average expected heterozygosity average observed heterozygosity climate change growth form genetic variation SSR
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