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盐敏感型与耐盐型高粱对盐胁迫反应的转录组差异分析
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作者 范娜 彭之东 白文斌 《植物营养与肥料学报》 CAS CSCD 北大核心 2022年第11期2130-2142,共13页
【目的】研究高粱盐胁迫的生理学差异及其分子机制,发掘高粱在盐胁迫过程中的关键调控基因,筛选高粱耐盐和盐敏感材料,探讨高粱耐盐胁迫的机制。【方法】本试验以耐盐材料“67B”及盐敏感材料“3560R”为研究对象,加入150 mmol/L NaCl... 【目的】研究高粱盐胁迫的生理学差异及其分子机制,发掘高粱在盐胁迫过程中的关键调控基因,筛选高粱耐盐和盐敏感材料,探讨高粱耐盐胁迫的机制。【方法】本试验以耐盐材料“67B”及盐敏感材料“3560R”为研究对象,加入150 mmol/L NaCl溶液进行盐胁迫,测定叶片生长指标、进行转录组测序和生物信息学分析。【结果】盐分胁迫下,耐盐材料生长速率快,表现出较强的耐盐性,耐盐材料可以提高Na^(+)的选择吸收及其在植株体内的积累与分配。盐胁迫下耐盐材料可以维持较高的过氧化氢酶活性,受到盐胁迫后该酶活性升高幅度相对较大,进而保持了较强的过氧化氢清除能力,能够及时清除过量积累的活性氧。盐胁迫下两个品系共有5040个差异表达基因。盐敏感材料和耐盐材料对盐胁迫的响应途径是相同的,两者差异表达基因在KEGG各pathway中的分布趋势差别很大,排名前五的基因数条目有3条相同,分别为苯丙烷类合成、植物激素信号转导和碳代谢通路,盐敏感材料中另外两条不同的条目为淀粉与蔗糖代谢及氨基酸生物合成通路,与基础代谢有关,盐敏感材料中差异基因主要集中在基础代谢和次生物质合成途径,是造成两个材料耐盐性差异的重要原因。【结论】高粱的耐盐机制调控是一个复杂的过程,是由不同通路一系列基因表达共同作用的结果,依赖于多个基因在复杂网络中的平衡表达。 展开更多
关键词 高粱 盐胁迫 转录组差异分析
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利用差异转录组定位Paraburkholderia caffeinilytica CF1咖啡因降解功能基因
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作者 陈森 高婕 +1 位作者 王剑桥 高子晴 《大连工业大学学报》 CAS 2024年第4期251-256,共6页
实验室前期从茶园土壤中筛选到一株高效咖啡因降解菌CF1。为了寻找菌株CF1降解咖啡因的功能基因,对有无咖啡因添加条件下菌株CF1的转录组进行测序,并进行了差异转录组分析。结果显示,共得到4 871条Unigene序列,以菌株CF1的全基因组为模... 实验室前期从茶园土壤中筛选到一株高效咖啡因降解菌CF1。为了寻找菌株CF1降解咖啡因的功能基因,对有无咖啡因添加条件下菌株CF1的转录组进行测序,并进行了差异转录组分析。结果显示,共得到4 871条Unigene序列,以菌株CF1的全基因组为模板,96.96%的序列可得到注释。组间差异基因分析结果显示,添加咖啡因条件下上调基因为123条,而下调基因为2 669条。在上调基因中,112条基因编码在染色体上,11条基因编码在巨型质粒上。通过Blast比对和关键酶酶活测定,证明了这11条编码在质粒上的基因与咖啡因降解功能直接相关,且聚集排布形成一条咖啡因降解基因簇。 展开更多
关键词 咖啡因降解 转录测序 差异转录分析
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Arbuscular mycorrhizae status of host plant affects offspring’s phenotype and transcriptome expression in a low-phosphorus environment
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作者 Shijun Liu Jing Xu +2 位作者 Hong Huang Jianjun Tang Xin Chen 《Journal of Plant Ecology》 SCIE CSCD 2024年第2期173-187,共15页
Although the effects of arbuscular mycorrhizal fungi(AMF)on host plants have been well documented,whether the effects of AMF on parental generations affect offspring performance is not fully clear.We conducted a commo... Although the effects of arbuscular mycorrhizal fungi(AMF)on host plants have been well documented,whether the effects of AMF on parental generations affect offspring performance is not fully clear.We conducted a common garden experiment to determine whether AMF status of host plants(Medicago truncatula)affects phenotype and transcriptome expression of their offspring.Seeds from four type parental treatments(low-phosphorus(P)soil without AMF,low-P soil with AMF,high-P soil without AMF and high-P soil with AMF)were grown under low-P(LPS)and normal-P soil(OHS)conditions.The fowering pattern of LP offspring was similar to their parents,such that plants with AMF fowered earlier than those without AMF under OHS condition but were opposite under LPS condition.The transcriptome differential analysis showed that some differential transcripts(45 for parental plants growing under low-P condition and 3 for parental plants growing under high-P condition)expression patterns between offspring were comparable,and that only affected by parental AMF status regardless of the P environment that offspring was grown.Others(146 for parental plants growing under low-P condition and 2 for parental plants growing under high-P condition),however,were affected both by the parental AMF status and the offspring P environment.In addition,the number of differential transcripts between offspring whose parental plants grew under high-P condition was far less than under low-P condition.These results indicate that AMF may not only affect the current generation of host plants but also affect the offspring especially when their parents have experienced a stressful environment. 展开更多
关键词 arbuscular mycorrhizal fungi low-phosphorus environment fowering pattern transgenerational effects transcriptome differential analysis
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