[Objective] The aim was to explore the special methods for amplification of large-family genes by using primers with high degeneracy.[Method] By using the primers with high degeneracy,conventional PCR,conventional tou...[Objective] The aim was to explore the special methods for amplification of large-family genes by using primers with high degeneracy.[Method] By using the primers with high degeneracy,conventional PCR,conventional touchdown PCR and the optimized abnormal touchdown PCR were respectively carried out to amplify the genomic DNA of Cyprinus carpio.[Result] Only one evident electrophoretic band and a few Sox genes were obtained by using normal PCR;no obvious electrophoretic band but dispersive product was obtained by normal touchdown PCR;ideal result was obtained by the abnormal touchdown PCR that three evident electrophoretic bands and much more Sox genes were amplified.[Conclusion] The research provided theoretical basis for the optimization and selection of PCR amplification conditions of the large-family genes.展开更多
The dynamic microcosms were used to evaluate the effect of oil spills on microbial ecological system in marine sediment and the enhancement of nutrient on the oil removal. The function and structure of microbial commu...The dynamic microcosms were used to evaluate the effect of oil spills on microbial ecological system in marine sediment and the enhancement of nutrient on the oil removal. The function and structure of microbial community caused by the oil pollution and phosphate dosage were simultaneously monitored by dehydrogenase activity assay and PCR-denaturing gradient gel electrophoresis(DGGE) techniques. The results indicated that the amount of total bacteria in all dynamic microcosms declined rapidly with incubation time. The number of petroleum-degrading bacteria and the activity of sediment dehydrogenase were gradually enhanced by petroleum in the oil-treated microcosms, while they both showed no obvious response to phosphate dosage. In comparison, phosphate spiked heterotrophic bacteria and they showed a significant increase in amount. DGGE profiles indicated that petroleum dosage greatly changed community structure, and the bacteria belonged to class Deltaproteobacteria, and phyla Bacteroidetes and Chlorobi were enriched. This study demonstrated that petroleum input greatly impacted the microbial community structure and consequently the marine sediment petroleum-degrading activity was enhanced. Phosphate dosage would multiply heterotrophic bacteria but not significantly enhance the petroleum degradation.展开更多
Aims Plant litter decomposition is a key ecosystem process that determines carbon and nutrient cycling in terrestrial ecosystems.As a main component of litter,cellulose is a vital energy source for the microbes associ...Aims Plant litter decomposition is a key ecosystem process that determines carbon and nutrient cycling in terrestrial ecosystems.As a main component of litter,cellulose is a vital energy source for the microbes associated with litter decomposition.The important role of cellulolytic enzymes in litter cellulose degradation is well understood,but seasonal patterns of cellulose degradation and whether cumulative enzyme activities and litter quality forecast cellulose degradation in an alpine meadow remain elusive,which limits our understanding of cellulose degradation in herbaceous plant litter.Methods A two-year field litterbag experiment involving three dominant species(Ajuga ovalifolia,Festuca wallichanica,and Pedicularis roylei)was conducted in an alpine meadow of the eastern Tibetan Plateau to explore the seasonal patterns of cellulose degradation and how cumulative cellulolytic enzyme activities and initial litter quality impact cellulose degradation.Important findings Our study demonstrates that cellulose degraded rapidly and exceeded 50%during the first year,which mainly occurred in the first growing season(31.9%–43.3%).At two years of decomposition,cellulose degradation was driven by cumulative endoglucanase(R^(2)=0.70),cumulative cellobiohydrolase(R^(2)=0.59)and cumulative 1,4-β-glucosidase(R^(2)=0.57).In addition,the concentrations of cellulose,dissolved organic carbon,total phenol,lignin and lignin/N accounted for 52%–78%of the variation in cellulose degradation during the two years of decomposition.The best model for predicting cellulose degradation was the initial cellulose concentration(R^(2)=0.78).The enzymatic efficiencies and the allocation of cellulolytic enzyme activities were different among species.The cellulolytic enzyme efficiencies were higher in the litter of F.wallichanica with relatively lower quality.For the complete cellulose degradation of the leaf litter,A.ovalifolia and F.wallichanica required 4-fold and 6.7-fold more endoglucanase activity,3-fold and 4.5-fold more cellobiohydrolase activity and 1.2-fold and 1.4-fold more 1,4-β-glucosidase activity,respectively,than those required by P.roylei.Our results demonstrated that although microbial activity and litter quality both have significant impacts on cellulose degradation in an alpine meadow,using cellulose concentration to predict cellulose degradation is a good way to simplify the model of cellulose degradation and C cycling during litter decomposition.展开更多
文摘[Objective] The aim was to explore the special methods for amplification of large-family genes by using primers with high degeneracy.[Method] By using the primers with high degeneracy,conventional PCR,conventional touchdown PCR and the optimized abnormal touchdown PCR were respectively carried out to amplify the genomic DNA of Cyprinus carpio.[Result] Only one evident electrophoretic band and a few Sox genes were obtained by using normal PCR;no obvious electrophoretic band but dispersive product was obtained by normal touchdown PCR;ideal result was obtained by the abnormal touchdown PCR that three evident electrophoretic bands and much more Sox genes were amplified.[Conclusion] The research provided theoretical basis for the optimization and selection of PCR amplification conditions of the large-family genes.
基金supported by the National Natural Science Foundation of China (Grant No.40801193)the Basic Research Projects of Qingdao Science and Technology Program (12-1-4-1-(12)-jch)the Scientific Research Foundation for the Excellent Middle-Aged and Youth Scientists of Shandong Province of China (BS2011NJ018)
文摘The dynamic microcosms were used to evaluate the effect of oil spills on microbial ecological system in marine sediment and the enhancement of nutrient on the oil removal. The function and structure of microbial community caused by the oil pollution and phosphate dosage were simultaneously monitored by dehydrogenase activity assay and PCR-denaturing gradient gel electrophoresis(DGGE) techniques. The results indicated that the amount of total bacteria in all dynamic microcosms declined rapidly with incubation time. The number of petroleum-degrading bacteria and the activity of sediment dehydrogenase were gradually enhanced by petroleum in the oil-treated microcosms, while they both showed no obvious response to phosphate dosage. In comparison, phosphate spiked heterotrophic bacteria and they showed a significant increase in amount. DGGE profiles indicated that petroleum dosage greatly changed community structure, and the bacteria belonged to class Deltaproteobacteria, and phyla Bacteroidetes and Chlorobi were enriched. This study demonstrated that petroleum input greatly impacted the microbial community structure and consequently the marine sediment petroleum-degrading activity was enhanced. Phosphate dosage would multiply heterotrophic bacteria but not significantly enhance the petroleum degradation.
基金National Natural Science Foundation of China[31200345,31570605 and 31370628]China Scholarship Council(201706910039) to Y.C.(joint Ph.D.programme grant).
文摘Aims Plant litter decomposition is a key ecosystem process that determines carbon and nutrient cycling in terrestrial ecosystems.As a main component of litter,cellulose is a vital energy source for the microbes associated with litter decomposition.The important role of cellulolytic enzymes in litter cellulose degradation is well understood,but seasonal patterns of cellulose degradation and whether cumulative enzyme activities and litter quality forecast cellulose degradation in an alpine meadow remain elusive,which limits our understanding of cellulose degradation in herbaceous plant litter.Methods A two-year field litterbag experiment involving three dominant species(Ajuga ovalifolia,Festuca wallichanica,and Pedicularis roylei)was conducted in an alpine meadow of the eastern Tibetan Plateau to explore the seasonal patterns of cellulose degradation and how cumulative cellulolytic enzyme activities and initial litter quality impact cellulose degradation.Important findings Our study demonstrates that cellulose degraded rapidly and exceeded 50%during the first year,which mainly occurred in the first growing season(31.9%–43.3%).At two years of decomposition,cellulose degradation was driven by cumulative endoglucanase(R^(2)=0.70),cumulative cellobiohydrolase(R^(2)=0.59)and cumulative 1,4-β-glucosidase(R^(2)=0.57).In addition,the concentrations of cellulose,dissolved organic carbon,total phenol,lignin and lignin/N accounted for 52%–78%of the variation in cellulose degradation during the two years of decomposition.The best model for predicting cellulose degradation was the initial cellulose concentration(R^(2)=0.78).The enzymatic efficiencies and the allocation of cellulolytic enzyme activities were different among species.The cellulolytic enzyme efficiencies were higher in the litter of F.wallichanica with relatively lower quality.For the complete cellulose degradation of the leaf litter,A.ovalifolia and F.wallichanica required 4-fold and 6.7-fold more endoglucanase activity,3-fold and 4.5-fold more cellobiohydrolase activity and 1.2-fold and 1.4-fold more 1,4-β-glucosidase activity,respectively,than those required by P.roylei.Our results demonstrated that although microbial activity and litter quality both have significant impacts on cellulose degradation in an alpine meadow,using cellulose concentration to predict cellulose degradation is a good way to simplify the model of cellulose degradation and C cycling during litter decomposition.