为了阐明大菱鲆丝裂原活化蛋白激酶激酶(mitogen-activated protein kinase kinases,MAPKKs或MKKs)基因家族在生物和非生物应激响应中的作用,本实验首先通过生物信息学方法对大菱鲆MKK基因家族进行了全基因组水平的鉴定,利用多个应激相...为了阐明大菱鲆丝裂原活化蛋白激酶激酶(mitogen-activated protein kinase kinases,MAPKKs或MKKs)基因家族在生物和非生物应激响应中的作用,本实验首先通过生物信息学方法对大菱鲆MKK基因家族进行了全基因组水平的鉴定,利用多个应激相关转录组数据集分析了大菱鲆MKK家族成员在不同组织及不同生物和非生物应激下的表达模式。结果显示,本研究在大菱鲆全基因组水平上共鉴定出9个MKK基因家族成员,它们不均匀地分布在7条染色体上,并分别对其编码蛋白的理化性质、蛋白二级结构和亚细胞定位进行了预测。基于系统发育分析,将SmMKKs划分为5个亚家族。内含-外显子结构、保守基序和多重序列比对分析结果不仅为大菱鲆MKK亚家族分类提供了证据,而且表明SmMKKs在进化上高度保守。SmMKKs在不同组织及不同生物和非生物应激下的基因表达模式分析表明,SmMKKs具有明显的组织特异性表达。另外,结果显示,粘孢子虫和肿大细胞病毒感染后,SmMKK6a呈极显著差异表达;热应激处理后,SmMKK6a呈极显著差异表达;高盐或低盐胁迫后,SmMKK4a、SmMKK4b、SmMKK6a和SmMKK7呈极显著差异表达。SmMKK6a在各种应激条件下均表现出极显著响应,表明其可能在综合抗应激中具有潜在的作用。这可能是第一个对大菱鲆MKK基因家族进行系统识别和功能分析的研究。以上研究结果不仅表明MKK基因家族在大菱鲆响应多种生物和非生物应激中发挥重要作用,而且也为大菱鲆综合抗逆分子选择育种研究提供了重要的理论支撑。展开更多
The transcriptional factor WRKY proteins contain the highly conserved amino acid sequence WRKYGQK as well as the novel zinc-finger-like motifs Cys2His2 or Cys2HisCys. A search of the rice genome identi-fied 97 genes e...The transcriptional factor WRKY proteins contain the highly conserved amino acid sequence WRKYGQK as well as the novel zinc-finger-like motifs Cys2His2 or Cys2HisCys. A search of the rice genome identi-fied 97 genes encoding WRKY proteins. Of these 97 WRKY homologs found in rice, 13 cDNAs encoding WRKY proteins were consequently isolated from a rice cDNA library con-structed from 4℃-treated shoots by probing for the con-served WRKY domain. Northern blotting analysis revealed that 10 of 13 OsWRKY genes were differentially regulated in plants that were treated by the four following abiotic stress factors: NaCl,PEG,cold (4℃) and heat (42℃). The resulting expression profiles exhibited great differences in both the manner and timing of their response to the four different abiotic treatments. The difference of gene expression profiles suggested the different physiological functions among the WRKY genes.展开更多
文摘为了阐明大菱鲆丝裂原活化蛋白激酶激酶(mitogen-activated protein kinase kinases,MAPKKs或MKKs)基因家族在生物和非生物应激响应中的作用,本实验首先通过生物信息学方法对大菱鲆MKK基因家族进行了全基因组水平的鉴定,利用多个应激相关转录组数据集分析了大菱鲆MKK家族成员在不同组织及不同生物和非生物应激下的表达模式。结果显示,本研究在大菱鲆全基因组水平上共鉴定出9个MKK基因家族成员,它们不均匀地分布在7条染色体上,并分别对其编码蛋白的理化性质、蛋白二级结构和亚细胞定位进行了预测。基于系统发育分析,将SmMKKs划分为5个亚家族。内含-外显子结构、保守基序和多重序列比对分析结果不仅为大菱鲆MKK亚家族分类提供了证据,而且表明SmMKKs在进化上高度保守。SmMKKs在不同组织及不同生物和非生物应激下的基因表达模式分析表明,SmMKKs具有明显的组织特异性表达。另外,结果显示,粘孢子虫和肿大细胞病毒感染后,SmMKK6a呈极显著差异表达;热应激处理后,SmMKK6a呈极显著差异表达;高盐或低盐胁迫后,SmMKK4a、SmMKK4b、SmMKK6a和SmMKK7呈极显著差异表达。SmMKK6a在各种应激条件下均表现出极显著响应,表明其可能在综合抗应激中具有潜在的作用。这可能是第一个对大菱鲆MKK基因家族进行系统识别和功能分析的研究。以上研究结果不仅表明MKK基因家族在大菱鲆响应多种生物和非生物应激中发挥重要作用,而且也为大菱鲆综合抗逆分子选择育种研究提供了重要的理论支撑。
文摘The transcriptional factor WRKY proteins contain the highly conserved amino acid sequence WRKYGQK as well as the novel zinc-finger-like motifs Cys2His2 or Cys2HisCys. A search of the rice genome identi-fied 97 genes encoding WRKY proteins. Of these 97 WRKY homologs found in rice, 13 cDNAs encoding WRKY proteins were consequently isolated from a rice cDNA library con-structed from 4℃-treated shoots by probing for the con-served WRKY domain. Northern blotting analysis revealed that 10 of 13 OsWRKY genes were differentially regulated in plants that were treated by the four following abiotic stress factors: NaCl,PEG,cold (4℃) and heat (42℃). The resulting expression profiles exhibited great differences in both the manner and timing of their response to the four different abiotic treatments. The difference of gene expression profiles suggested the different physiological functions among the WRKY genes.
