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人肝细胞癌预后不良相关基因的生物信息学分析及其临床意义 被引量:3
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作者 席义博 张皓旻 +3 位作者 杨波 陈熙勐 贺培凤 卢学春 《中国应用生理学杂志》 CAS CSCD 北大核心 2019年第1期90-96,I0002,I0005,共9页
目的:筛选肝细胞癌(HCC)预后不良相关基因,并探讨其临床意义。方法:在基因表达综合数据库(GEO)中获取符合分析条件的肝细胞癌全基因组表达谱数据并分析得到差异表达基因(DEGs),再运用生物学信息注释及可视化数据库(DAVID)和蛋白相互作... 目的:筛选肝细胞癌(HCC)预后不良相关基因,并探讨其临床意义。方法:在基因表达综合数据库(GEO)中获取符合分析条件的肝细胞癌全基因组表达谱数据并分析得到差异表达基因(DEGs),再运用生物学信息注释及可视化数据库(DAVID)和蛋白相互作用数据库(String)分别进行功能富集分析和蛋白质互作用网络的构建。利用癌症基因组图谱数据库(TCGA)和Cox比例风险回归模型对相关差异基因进行预后分析。结果:找到一个符合条件的人类HCC数据库(GSE84402),共筛选出1141个差异表达基因(DEGs),其中上调基因720个,下调基因421个。基因功能富集分析和蛋白质互作用分析结果显示CDK1、CDC6、CCNA2、CHEK1、CENPE、PIK3R1、RACGAP1、BIRC5、KIF11和CYP2B6为HCC预后的关键基因。TCGA数据库和Cox回归模型分析显示CDC6、PIK3R1、RACGAP1和KIF11的表达升高,CENPE的表达降低与HCC预后不良密切相关。结论:CDC6、CENPE、PIK3R1、RACGAP1和KIF11可能和HCC的预后不良相关,可作为未来HCC预后研究的参考标志物。 展开更多
关键词 肝细胞癌 预后不良基因 生物信息学 COX比例风险回归模型
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High expression of △Np73 predicts poor prognosis in NSCLC cancer patients 被引量:1
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作者 何勇 范士志 +2 位作者 蒋耀光 陈建明 胡义杰 《Journal of Medical Colleges of PLA(China)》 CAS 2007年第2期101-105,共5页
Objective: To study the expression of △Np73, an isoform of the p53 homologue p73, in the different stages of human non-small-cell lung cancer (NSCLC) and the association of△Np73 expression with in patient survival. ... Objective: To study the expression of △Np73, an isoform of the p53 homologue p73, in the different stages of human non-small-cell lung cancer (NSCLC) and the association of△Np73 expression with in patient survival. Methods: Semi-quantitative reverse transcriptase polymerase chain reaction (RT-PCR) was used to study the expression of△Np73 mRNA in 51 resected NSCLC tissues. Its relation to clinicopathological factors and survival outcome were analyzed. Results: The positive rate and expression level of△Np73 mRNA in the cancer tissues were significantly higher than that in the matched non-cancer lung tissues. The incidence of positive expression of△Np73 was 50. 0% , 52. 6% , and 87. 5% in patients with stageⅠ,Ⅱ, andⅢ, respectively. Positive expression of△Np73 was associated with pathological TNM stage (P = 0. 046), while not with age, gender, histological type and differentiation status. Survival rate of patients with high△Np73 mRNA was significantly poorer than those with low△Np73 mRNA levels (P<0. 001). Multivariate analysis revealed that△Np73 mRNA levels were a significant prognostic factor, independent of the other conventional prognostic factors. Conclusion: NSCLC has over-expression of△Np73 mRNA, which is closely related to TNM stages and prognosis of patients with NSCLC. These results suggest that measurement of△Np73 mRNA levels in tumor tissues might be useful as a promising predictor for the prognosis of patients with NSCLC. 展开更多
关键词 p73 gene lung neoplasms RT-PCR PROGNOSIS
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A Valuable System with High Specificity for Evaluating both Metastasis and Prognosis of Oral Squamous Cell Carcinoma 被引量:1
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作者 Jianming Zhang Ping Gao +2 位作者 Jie Sun Nan Ma Sakan Maeda 《Chinese Journal of Clinical Oncology》 CSCD 2009年第2期79-84,共6页
OBJECTIVE A system was established to evaluate the metastasis and prognosis of oral squamous cell carcinoma by analyzing the tumor differentiation, the TNM stage, the mode of invasion, and the expression of E-cadherin... OBJECTIVE A system was established to evaluate the metastasis and prognosis of oral squamous cell carcinoma by analyzing the tumor differentiation, the TNM stage, the mode of invasion, and the expression of E-cadherin and S100A4. METHODS Squamous cell carcinoma of the oral cavity of 86 cases was the focus of our study. In this system, the histopathological grade and the histochemical patterns were estimated on a 0-3 point scale, the total points graded from 0 to 13. RESULTS The incidence of metastasis and prognosis in the cases with total points more than 8 was significantly higher than that with total points less than 7 (P 〈 0.05,χ^2= 22.0658 and P 〈 0.05, χ^2= 10.7047). The system had a significant higher specificity than that of 'DIAGS index' system (Differentiation, Invasion mode, Adhesion molecules, Glycosaminoglycan, and the Sugar chain) in the evaluation of metastasis (P 〈 0.05, u = 2.2339). Moreover, the specificity for evaluation of metastasis in the system was significantly higher than that of E-cadherin (P 〈 0.05, u = 2.4996) or S100A4 (P 〈 0.05, u = 2.4289) only. Furthermore the specificity for evaluation of unfavorable prognosis in the system was also significantly higher than that of E-cadherin (P 〈 0.05, u = 2.1313) or S100A4 only (P 〈 0.05, u = 2.0301). CONCLUSION This is a valuable evaluation system with high specificity to predict metastatic potential and prognosis of oral squamous cell carcinoma. 展开更多
关键词 METASTASIS PROGNOSIS squamous cell carcinoma E-CADHERIN S100A4.
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