The main objective of this work is to examine statistical causality relationships between low-frequency modes of climate variability and winter （December to February） anomaly of net heat flux at the Mediterranean ai...The main objective of this work is to examine statistical causality relationships between low-frequency modes of climate variability and winter （December to February） anomaly of net heat flux at the Mediterranean air-sea interface. The introduction of the concept of Granger causality allowed us to examine the influence of these climates indices on the net heat flux anomaly and to select Mediterranean surface regions that really influenced by each index. Results show that the winter anomaly of the net heat flux in the Algerian basin south and the gulf of Lion is mainly caused by the Arctic Oscillation. El Nifio-Southern Oscillation influences much more the Algerian basin north and the northern lonian Sea. The Quasi-Biennial Oscillation affects only the Alboran and the Tyrrhenian Seas. But the Adriatic and Levantine basin are impacted by any climate index. They also show that these climate indices can increase explained variance in winter variations of air-sea net heat flux by 10% to 15%, with a lag of three seasons. These relationships are less persistent and spatially limited.展开更多
The availability of a large number of sequenced bacterial genomes facilitates in-depth studies about why genes(operons)in a bacterial genome are globally organized the way they are.We have previously discovered that(t...The availability of a large number of sequenced bacterial genomes facilitates in-depth studies about why genes(operons)in a bacterial genome are globally organized the way they are.We have previously discovered that(the relative)transcription-activation frequencies among different biological pathways encoded in a genome have a dominating role in the global arrangement of operons.One complicating factor in such a study is that some operons may be involved in multiple pathways with different activation frequencies.A quantitative model has been developed that captures this information,which tends to be minimized by the current global arrangement of operons in a bacterial(and archaeal)genome compared to possible alternative arrangements.A study is carried out here using this model on a collection of 52 closely related Escherichia coli genomes,which revealed interesting new insights about how bacterial genomes evolve to optimally adapt to their environments through adjusting the(relative)genomic locations of the encoding operons of biological pathways once their utilization and hence transcription activation frequencies change,to maintain the above energy-efficiency property.More specifically we observed that it is the frequencies of the transcription activation of pathways relative to those of the other encoded pathways in an organism as well as the variation in the activation frequencies of a specific pathway across the related genomes that play a key role in the observed commonalities and differences in the genomic organizations of genes(and operons)encoding specific pathways across different genomes.展开更多
文摘The main objective of this work is to examine statistical causality relationships between low-frequency modes of climate variability and winter （December to February） anomaly of net heat flux at the Mediterranean air-sea interface. The introduction of the concept of Granger causality allowed us to examine the influence of these climates indices on the net heat flux anomaly and to select Mediterranean surface regions that really influenced by each index. Results show that the winter anomaly of the net heat flux in the Algerian basin south and the gulf of Lion is mainly caused by the Arctic Oscillation. El Nifio-Southern Oscillation influences much more the Algerian basin north and the northern lonian Sea. The Quasi-Biennial Oscillation affects only the Alboran and the Tyrrhenian Seas. But the Adriatic and Levantine basin are impacted by any climate index. They also show that these climate indices can increase explained variance in winter variations of air-sea net heat flux by 10% to 15%, with a lag of three seasons. These relationships are less persistent and spatially limited.
基金supported in part by National Science Foundation (#NSF DEB-0830024 and NSF MCB-0958172)the US Department of Energy’s BioEnergy Science Center grant through the Office of Biological and Environmental Research+1 种基金The BioEnergy Science Center is a US Department of Energy Bioenergy Research Center supported by the Office of Biological and Environmental Research in the DOE Office of ScienceFunding for open access charge: US Department of Energy’s BioEnergy Science Center
文摘The availability of a large number of sequenced bacterial genomes facilitates in-depth studies about why genes(operons)in a bacterial genome are globally organized the way they are.We have previously discovered that(the relative)transcription-activation frequencies among different biological pathways encoded in a genome have a dominating role in the global arrangement of operons.One complicating factor in such a study is that some operons may be involved in multiple pathways with different activation frequencies.A quantitative model has been developed that captures this information,which tends to be minimized by the current global arrangement of operons in a bacterial(and archaeal)genome compared to possible alternative arrangements.A study is carried out here using this model on a collection of 52 closely related Escherichia coli genomes,which revealed interesting new insights about how bacterial genomes evolve to optimally adapt to their environments through adjusting the(relative)genomic locations of the encoding operons of biological pathways once their utilization and hence transcription activation frequencies change,to maintain the above energy-efficiency property.More specifically we observed that it is the frequencies of the transcription activation of pathways relative to those of the other encoded pathways in an organism as well as the variation in the activation frequencies of a specific pathway across the related genomes that play a key role in the observed commonalities and differences in the genomic organizations of genes(and operons)encoding specific pathways across different genomes.
