[Objective] The aim was to study the sequence of aroA gene (synthetic gene in metabolic pathway of aromatic amino acids) of a pathogenic bacterium (Flavobacterium johnsoniae) causing gill-rote disease.[Method] Gen...[Objective] The aim was to study the sequence of aroA gene (synthetic gene in metabolic pathway of aromatic amino acids) of a pathogenic bacterium (Flavobacterium johnsoniae) causing gill-rote disease.[Method] Genomic DNA of strain M165 of F.johnsoniae was used as a template,three specific nested primers of 5'end and 3'end and arbitrary primer were used to amplify the aroA gene of strain M165 through Thermal asymmetric interlaced PCR (TAIL-PCR).And the obtained sequence was analyzed.[Result] The electrophoresis determination result showed that the size of amplified product was consist with the expected product; sequencing analysis suggested that the full-length of aroA gene was 1 230 bp,enconding 410 amino acids.The amino acid sequence of aroA protein showed the highest level of similarity to amino acids sequence of aroA protein of F.johnsoniae.[Conclusion] TAIL-PCR provided a simple and efficient new method for the cloning of the gene sequence.Obtaining of full-length of aroA gene provided a foundation for further investigation on the effects of nutrition correlation factors such as aroA on the virulence of and virulence of F.johnsoniae.展开更多
[Objective] This study aimed to investigate the combined control effects of endophytic bacteria at different growth stages against cotton Verticfllium wilt and pro- vide a new strategy for the biocontrol of other soil...[Objective] This study aimed to investigate the combined control effects of endophytic bacteria at different growth stages against cotton Verticfllium wilt and pro- vide a new strategy for the biocontrol of other soil-borne diseases. [Method] Endophytic bacteria with high resistance against Verticillium wilt were isolated from seedling, squaring and boll-setting cotton vascular, respectively. Their 16S rDNA se- quences were detected for comparative analysis. Three biocontrol strains were se- lected and identified, whose colonization roles in cotton plants were explored. The control efficiency was determined with indoor and field experiments. [Result] Accord- ing to the 16S rDNA sequence homology, the three strains were identified as Paeni- bacillus polyrnyxa YUPP-8, Paenibacillus xylanilyticus YUPP-1 and Bacillus subtilis YUPP-2, respectively. Results of colonization assessment showed that three strains all could be successfully colonized in cotton vascular. However, application amount had a positive effect on the number of colonized biocontrol bacteria in cotton, strain YUPP-8 had the largest number of colonized biocontrol bacteria in seedling period, strain YUPP-1 had the largest number of colonized biocontrol bacteria in squaring period, and strain YUPP-2 had the largest number of colonized biocontrol bacteria in boll-setting period. Indoor pot experiment showed that cotton plants in combined bio- control bacteria treatment group were not infected in flowing period, while Verticillium wilt morbidity rate of cotton treated with single strain in seedling period were 6.7% (YUPP-8), 6.7% (YUPP-1) and 13.3% (YUPP-2); however, Verticillium wilt morbidity rate wilt of the control reached 80%. Field experiment conducted during 2010-2011 showed that the combined application of three strains had better effect than separate application; specifically, Verticillium wilt morbidity rate and disease index of cotton in boll-setting period with combined application of three strains in 2010 were 9.4% and 6.5, respectively, while those in control group were 47.5% and 32.8; results in 2011 were similar to 2010, with higher disease severity. These results indicate that com- bined application of endophytic bacteria at different growth stages has great applica- tion potential in control of cotton Verticillium wilt. [Conclusion] This study preliminarily overcomes the defects in the application of biocontrol bacteria and provided reference for the prevention and treatment of other soil-borne diseases.展开更多
Flavobacterium columnare is the pathogenic agent of columnaris disease in aquaculture. Using a recently developed gene deletion strategy, two genes that encode the Glyco hydro_19 domain (GH19 domain) containing prot...Flavobacterium columnare is the pathogenic agent of columnaris disease in aquaculture. Using a recently developed gene deletion strategy, two genes that encode the Glyco hydro_19 domain (GH19 domain) containing proteins, ghd-1 and ghd-2, were deleted separately and together from the F. columnare G4 wild type strain. Surprisingly, the single-, Aghd-1 and Aghd-2, and double-gene mutants, Aghd-1 Aghd-2, all had rhizoid and non-rhizoid colony morphotypes, which we named Aghd-1, Aghd-2, Aghd-1 Aghd-2, and NAghd-1, NAghd-2, and NAghd-1 Aghd-2. However, chitin utilization was not detected in either these mutants or in the wild type. Instead, skimmed milk degradation was observed for the mutants and the wild type; the non-rhizoid strain NAghd-2 exhibited higher degradation activity as revealed by the larger transparent circle on the skimmed milk plate. Using zebrafish as the model organism, we found that non-rhizoid mutants had higher LDs0 values and were less virulent because zebrafish infected with these survived longer. Transcriptome analysis between the non-rhizoid and rhizoid colony morphotypes of each mutant, i.e., NAghd-1 versus (vs) Aghd-1, NAghd-2 vs Aghd-2, and NAghd-1 Aghd-2 vs Aghd-1 Aghd-2, revealed a large number of differentially expressed genes, among which 39 genes were common in three of the pairs compared. Although most of these genes encode hypothetical proteins, a few molecules such as phage tail protein, rhs element Vgr protein, thiol-activated cytolysin, and TonB-dependent outer membrane receptor precursor, expression of which was down-regulated in non-rhizoid mutants but up-regulated in rhizoid mutants, may play a role F. columnare virulence.展开更多
基金Supported by The Natural Science Foundation of Guangdong Province(06024033)National Special Fund for the Agricultural Commonweal Industry(200803013)Earmarked Fund for Modern Agroindustry Technology Research System(nycytx-49-14)~~
文摘[Objective] The aim was to study the sequence of aroA gene (synthetic gene in metabolic pathway of aromatic amino acids) of a pathogenic bacterium (Flavobacterium johnsoniae) causing gill-rote disease.[Method] Genomic DNA of strain M165 of F.johnsoniae was used as a template,three specific nested primers of 5'end and 3'end and arbitrary primer were used to amplify the aroA gene of strain M165 through Thermal asymmetric interlaced PCR (TAIL-PCR).And the obtained sequence was analyzed.[Result] The electrophoresis determination result showed that the size of amplified product was consist with the expected product; sequencing analysis suggested that the full-length of aroA gene was 1 230 bp,enconding 410 amino acids.The amino acid sequence of aroA protein showed the highest level of similarity to amino acids sequence of aroA protein of F.johnsoniae.[Conclusion] TAIL-PCR provided a simple and efficient new method for the cloning of the gene sequence.Obtaining of full-length of aroA gene provided a foundation for further investigation on the effects of nutrition correlation factors such as aroA on the virulence of and virulence of F.johnsoniae.
基金Supported by Public Welfare Industry(Agriculture)Research Special Project of Ministry of Agriculture(nyhyzx07-052)Open Project of the State Key Laboratory of Agricultural Microbiology(AML200806)+1 种基金Major Project of Hubei Provincial Department of Education(Z20091201)National College Students Innovative Experimental Program(091048922)~~
文摘[Objective] This study aimed to investigate the combined control effects of endophytic bacteria at different growth stages against cotton Verticfllium wilt and pro- vide a new strategy for the biocontrol of other soil-borne diseases. [Method] Endophytic bacteria with high resistance against Verticillium wilt were isolated from seedling, squaring and boll-setting cotton vascular, respectively. Their 16S rDNA se- quences were detected for comparative analysis. Three biocontrol strains were se- lected and identified, whose colonization roles in cotton plants were explored. The control efficiency was determined with indoor and field experiments. [Result] Accord- ing to the 16S rDNA sequence homology, the three strains were identified as Paeni- bacillus polyrnyxa YUPP-8, Paenibacillus xylanilyticus YUPP-1 and Bacillus subtilis YUPP-2, respectively. Results of colonization assessment showed that three strains all could be successfully colonized in cotton vascular. However, application amount had a positive effect on the number of colonized biocontrol bacteria in cotton, strain YUPP-8 had the largest number of colonized biocontrol bacteria in seedling period, strain YUPP-1 had the largest number of colonized biocontrol bacteria in squaring period, and strain YUPP-2 had the largest number of colonized biocontrol bacteria in boll-setting period. Indoor pot experiment showed that cotton plants in combined bio- control bacteria treatment group were not infected in flowing period, while Verticillium wilt morbidity rate of cotton treated with single strain in seedling period were 6.7% (YUPP-8), 6.7% (YUPP-1) and 13.3% (YUPP-2); however, Verticillium wilt morbidity rate wilt of the control reached 80%. Field experiment conducted during 2010-2011 showed that the combined application of three strains had better effect than separate application; specifically, Verticillium wilt morbidity rate and disease index of cotton in boll-setting period with combined application of three strains in 2010 were 9.4% and 6.5, respectively, while those in control group were 47.5% and 32.8; results in 2011 were similar to 2010, with higher disease severity. These results indicate that com- bined application of endophytic bacteria at different growth stages has great applica- tion potential in control of cotton Verticillium wilt. [Conclusion] This study preliminarily overcomes the defects in the application of biocontrol bacteria and provided reference for the prevention and treatment of other soil-borne diseases.
基金Supported by the Chinese Academy of Sciences(No.XDA08010207)the National Key Technology R&D Program of China(No.2012BAD25B02)the State Key Laboratory of Freshwater Ecology and Biotechnology(No.2016FBZ04)
文摘Flavobacterium columnare is the pathogenic agent of columnaris disease in aquaculture. Using a recently developed gene deletion strategy, two genes that encode the Glyco hydro_19 domain (GH19 domain) containing proteins, ghd-1 and ghd-2, were deleted separately and together from the F. columnare G4 wild type strain. Surprisingly, the single-, Aghd-1 and Aghd-2, and double-gene mutants, Aghd-1 Aghd-2, all had rhizoid and non-rhizoid colony morphotypes, which we named Aghd-1, Aghd-2, Aghd-1 Aghd-2, and NAghd-1, NAghd-2, and NAghd-1 Aghd-2. However, chitin utilization was not detected in either these mutants or in the wild type. Instead, skimmed milk degradation was observed for the mutants and the wild type; the non-rhizoid strain NAghd-2 exhibited higher degradation activity as revealed by the larger transparent circle on the skimmed milk plate. Using zebrafish as the model organism, we found that non-rhizoid mutants had higher LDs0 values and were less virulent because zebrafish infected with these survived longer. Transcriptome analysis between the non-rhizoid and rhizoid colony morphotypes of each mutant, i.e., NAghd-1 versus (vs) Aghd-1, NAghd-2 vs Aghd-2, and NAghd-1 Aghd-2 vs Aghd-1 Aghd-2, revealed a large number of differentially expressed genes, among which 39 genes were common in three of the pairs compared. Although most of these genes encode hypothetical proteins, a few molecules such as phage tail protein, rhs element Vgr protein, thiol-activated cytolysin, and TonB-dependent outer membrane receptor precursor, expression of which was down-regulated in non-rhizoid mutants but up-regulated in rhizoid mutants, may play a role F. columnare virulence.