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MTTSNet:Military time-sensitive targets stealth network via real-time mask generation
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作者 Siyu Wang Xiaogang Yang +4 位作者 Ruitao Lu Zhengjie Zhu Fangjia Lian Qing-ge Li Jiwei Fan 《Defence Technology(防务技术)》 SCIE EI CAS CSCD 2024年第3期601-612,共12页
The automatic stealth task of military time-sensitive targets plays a crucial role in maintaining national military security and mastering battlefield dynamics in military applications.We propose a novel Military Time... The automatic stealth task of military time-sensitive targets plays a crucial role in maintaining national military security and mastering battlefield dynamics in military applications.We propose a novel Military Time-sensitive Targets Stealth Network via Real-time Mask Generation(MTTSNet).According to our knowledge,this is the first technology to automatically remove military targets in real-time from videos.The critical steps of MTTSNet are as follows:First,we designed a real-time mask generation network based on the encoder-decoder framework,combined with the domain expansion structure,to effectively extract mask images.Specifically,the ASPP structure in the encoder could achieve advanced semantic feature fusion.The decoder stacked high-dimensional information with low-dimensional information to obtain an effective mask layer.Subsequently,the domain expansion module guided the adaptive expansion of mask images.Second,a context adversarial generation network based on gated convolution was constructed to achieve background restoration of mask positions in the original image.In addition,our method worked in an end-to-end manner.A particular semantic segmentation dataset for military time-sensitive targets has been constructed,called the Military Time-sensitive Target Masking Dataset(MTMD).The MTMD dataset experiment successfully demonstrated that this method could create a mask that completely occludes the target and that the target could be hidden in real time using this mask.We demonstrated the concealment performance of our proposed method by comparing it to a number of well-known and highly optimized baselines. 展开更多
关键词 Deep learning military application Targets stealth network Mask generation Generative adversarial network
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索马鲁肽治疗阿尔茨海默病的潜在靶点:沉默信息调节因子1 被引量:2
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作者 柴世凡 李欣儒 +3 位作者 叶育采 孙俊丽 蔡红艳 王昭君 《中国组织工程研究》 CAS 北大核心 2024年第20期3235-3239,共5页
背景:研究发现胰高血糖素样肽1及其类似物具有显著的神经保护作用,并且已有部分药物应用到阿尔茨海默病临床三期研究阶段,然而其发挥神经保护作用的具体机制尚不明确,有待进一步探讨阐明。目的:拟通过生物信息学和网络药理学分析方法筛... 背景:研究发现胰高血糖素样肽1及其类似物具有显著的神经保护作用,并且已有部分药物应用到阿尔茨海默病临床三期研究阶段,然而其发挥神经保护作用的具体机制尚不明确,有待进一步探讨阐明。目的:拟通过生物信息学和网络药理学分析方法筛选出阿尔茨海默病发病机制的相关基因,以及索马鲁肽(一种胰高血糖素样肽1受体激动剂)治疗阿尔茨海默病的相关靶点,对两者进行综合分析挑选出潜在靶点基因,并在细胞水平加以验证。方法:利用DisGeNET数据库筛选出阿尔茨海默病患者与健康人群的差异基因,利用PubChem在线数据库得到索马鲁肽的化学结构式和2D结构图,利用DAVID在线数据库进行GO/KEGG富集分析,利用STRING数据库进行蛋白互作网络的构建,利用HPA数据库判断目的蛋白在人体各组织中的分布特点,最后使用蛋白印迹技术和免疫荧光技术检测索马鲁肽干预HT22细胞之后的蛋白表达情况。结果与结论:①利用DisGeNET数据库内数据得到3374个阿尔茨海默病患者与健康人群的差异基因,同时获得索马鲁肽潜在药物的101个靶基因,取两者交集得到23个相关基因;结合蛋白互作网络从中筛选出10个关键基因,分别是沉默信息调节因子1(SIRT1)、CASP9、CCND1、CASP1、KEAP1、DLG4、CASP4、GRB2、GRIA1、EDNRA;②GO基因功能分析显示关键基因主要富集在:半胱氨酸型内肽酶的正向调节活动,蛋白溶解的正向调节,半胱氨酸型内肽酶的正向调节,涉及凋亡活动过程的细胞质部分,AMPA谷氨酸受体复合物,炎症复合物,CARD结构域结合,半胱氨酸型内肽酶活性,半胱氨酸型内肽酶活性参与凋亡过程;KEGG信号通路分析结果主要为:结直肠癌,非小细胞癌,子宫内膜癌,上述均与免疫浸润、炎症、自噬凋亡相关;此外,根据关键基因的关联度排名及在HPA在线数据库不同组织中的分布情况,挑选出最显著的差异基因为SIRT1;③细胞实验显示,SIRT1蛋白表达在β-淀粉样蛋白1-42干预后的HT22细胞中显著下调,而经过索马鲁肽处理后明显上升;④结果显示,SIRT1可能是索马鲁肽治疗阿尔茨海默病的靶点基因。 展开更多
关键词 DisGeNet数据库 阿尔茨海默病 索马鲁肽 2型糖尿病 生物信息学 网络药理学 沉默信息调节因子1
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Knowledge-Based Efficient N-1 Analysis Calculation Method for Urban Distribution Networks with CIM File Data
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作者 Lingyu Liang Xiangyu Zhao +3 位作者 Wenqi Huang Liming Sun Ziyao Wang Yaosen Zhan 《Energy Engineering》 EI 2023年第12期2839-2856,共18页
The N-1 criterion is a critical factor for ensuring the reliable and resilient operation of electric power distribution networks.However,the increasing complexity of distribution networks and the associated growth in ... The N-1 criterion is a critical factor for ensuring the reliable and resilient operation of electric power distribution networks.However,the increasing complexity of distribution networks and the associated growth in data size have created a significant challenge for distribution network planners.To address this issue,we propose a fast N-1 verification procedure for urban distribution networks that combines CIM file data analysis with MILP-based mathematical modeling.Our proposed method leverages the principles of CIM file analysis for distribution network N-1 analysis.We develop a mathematical model of distribution networks based on CIM data and transfer it into MILP.We also take into account the characteristics of medium voltage distribution networks after a line failure and select the feeder section at the exit of each substation with a high load rate to improve the efficiency of N-1 analysis.We validate our approach through a series of case studies and demonstrate its scalability and superiority over traditional N-1 analysis and heuristic optimization algorithms.By enabling online N-1 analysis,our approach significantly improves the work efficiency of distribution network planners.In summary,our proposed method provides a valuable tool for distribution network planners to enhance the accuracy and efficiency of their N-1 analyses.By leveraging the advantages of CIM file data analysis and MILP-based mathematical modeling,our approach contributes to the development of more resilient and reliable electric power distribution networks. 展开更多
关键词 MILP CIM fast analytical method N-1 distribution networks knowledge-based method
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Network pharmacology and molecular docking identify mechanisms of medicinal plant-derived 1,2,3,4,6-penta-O-galloyl-beta-D-glucose treating gastric cancer
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作者 MAN REN YUAN YANG +3 位作者 DAN LI NANNAN ZHAO YUPING WANG YONGNING ZHOU 《BIOCELL》 SCIE 2023年第5期977-989,共13页
Background:1,2,3,4,6-penta-O-galloyl-beta-D-glucose(PGG)is a natural polyphenolic compound derived from multiple medicinal plants with favorable anticancer activity.Methods:In this study,the mechanisms of PGG against ... Background:1,2,3,4,6-penta-O-galloyl-beta-D-glucose(PGG)is a natural polyphenolic compound derived from multiple medicinal plants with favorable anticancer activity.Methods:In this study,the mechanisms of PGG against gastric cancer were explored through network pharmacology and molecular docking.First,the targets of PGG were searched in the Herbal Ingredients’Targets(HIT),Similarity Ensemble Approach(SEA),and Super-PRED databases.The potential targets related to gastric cancer were predicted from the Human Gene Database(GeneCards)and DisGeNET databases.The intersecting targets of PGG and gastric cancer were obtained by Venn diagram and then subjected to protein-protein interaction analysis to screen hub targets.Functional and pathway enrichment of hub targets were analyzed through Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway databases.The differential expression and survival analysis of hub targets in gastric cancer were performed based on The Cancer Genome Atlas database.Finally,the affinity of PGG with hub targets was visualized by molecular docking.Results:Three hub targets were screened,including mitogen-activated protein kinase 14(MAPK14),BCL2 like 1(BCL2L1),and vascular endothelial growth factor A(VEGFA).MAPK14 had a higher expression,while BCL2L1 and VEGFA had lower expression in gastric cancer than in normal conditions.Enrichment analysis indicated enrichment of these hub targets in MAPK,neurotrophin,programmed death-ligand 1(PD-L1)checkpoint,phosphatidylinositol 3-kinases/protein kinase B(PI3K-Akt),Ras,and hypoxia-inducible factor-1(HIF-1)signaling pathways.Conclusion:Therefore,network pharmacology and molecular docking analyses revealed that PGG exerts a therapeutic efficacy on gastric cancer by multiple targets(MAPK14,BCL2L1,and VEGFA)and pathways(MAPK,PD-L1 checkpoint,PI3K-Akt,Ras,and HIF-1 pathways). 展开更多
关键词 1 2 3 4 6-penta-O-galloyl-beta-D-glucose Gastric cancer network pharmacology Molecular docking MAPK14 BCL2L1 VEGFA
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Integration of network pharmacology with experimental verification reveals the hypoglycemic mechanism of coptisine in Jinqi Jiangtang tablets:inhibition of the FoxO1 signaling pathway and hepatic gluconeogenesis
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作者 Hang Gong Yu-Cai Chen +4 位作者 Jia-Qi Xie Yi-Hong Li Li-Dan Cui Hong-Tao Jin Can Wang 《Traditional Medicine Research》 2023年第3期51-61,共11页
Background:Jinqi Jiangtang tablets(JQJT)have been approved for the treatment of type 2 diabetes mellitus(T2DM)in China for many years.Exploring the effective substances and mechanisms of JQJT is important for its clin... Background:Jinqi Jiangtang tablets(JQJT)have been approved for the treatment of type 2 diabetes mellitus(T2DM)in China for many years.Exploring the effective substances and mechanisms of JQJT is important for its clinical application and further drug research and development.This study aimed to explore the chemical basis and mechanisms of JQJT in the treatment of T2DM.Methods:With network pharmacology,we screened substances in JQJT and their possible targets,then constructed the action network and enriched the biological functions and pathways associated with the active components,and identified the potential targets and mechanisms of JQJT in the treatment of T2DM.Based on the network pharmacology data,we explored the hypoglycemic mechanisms of coptisine in JQJT through western blot and quantitative real-time polymerase chain reaction.Results:Forty-three compounds with good pharmacokinetic properties were identified in JQJT,together with 146 potential biological targets.Among these potential targets,74 were associated with treatment of T2DM.A compound-target network of the 43 compounds against T2DM was constructed.Biological process and signal pathway enrichment analysis of the network highlighted the FoxO signaling pathway.Western blot and quantitative real-time polymerase chain reaction results showed that coptisine,but not epiberberine,significantly inhibited expression of key genes involved in hepatocyte gluconeogenesis by regulating the FoxO1 signaling pathway.Conclusion:Network pharmacology analysis and cell experiments showed that coptisine regulated glucose homeostasis by inhibiting the FoxO1 signaling pathway and hepatic gluconeogenesis,which may be one of the mechanisms of JQJT in the treatment of T2DM. 展开更多
关键词 Jinqi Jiangtang tablets FOXO1 GLUCONEOGENESIS type 2 diabetes mellitus network pharmacology
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基于网络药理学和分子对接技术探讨中药外敷1号应用于唇炎的相关机制
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作者 姚曼曼 路月亭 +3 位作者 刘铁军 路华林 尚宏悦 许彦枝 《海南医学》 CAS 2024年第8期1149-1156,共8页
目的应用网络药理学和分子对接技术探讨中药外敷1号(TCM-EAN1)对于唇炎的相关作用机制。方法在TCMSP数据库中获取TCM-EAN1的活性成分和潜在靶点,疾病靶点利用DisGeNet和GeneCards获取,采用Venny取疾病-药物的交集,采用String数据库构建... 目的应用网络药理学和分子对接技术探讨中药外敷1号(TCM-EAN1)对于唇炎的相关作用机制。方法在TCMSP数据库中获取TCM-EAN1的活性成分和潜在靶点,疾病靶点利用DisGeNet和GeneCards获取,采用Venny取疾病-药物的交集,采用String数据库构建蛋白互作网络,采用Cytoscape软件构建疾病-靶点-中药有效成分-药物网络,应用David数据库将TCM-EAN1进行GO和KEGG富集分析,应用AutoDock对TCM-EAN1的活性成分和关键治疗唇炎靶点进行分子对接验证。结果TCM-EAN1与唇炎的相关作用靶点共35个,蛋白相互作用(PPI)结果显示核心靶点分别是TP53、TNF、HIF1A、BCL-2、RXRA、EGFR、IL-6、PTGS2、CDKN1A,通过网络构建核心有效成分分别为槲皮素、汉黄芩素、木犀草素、山柰酚、β-谷甾醇、白鲜明碱、前茵芋碱、豆甾醇和苦参素。GO分析共获得429条生物过程,主要有:基因表达的正向调控、凋亡过程的负调控、转录的正调控、炎症反应、细胞外空间、细胞因子活性、生长因子活性等,KEGG共获得107条通路,主要与IL-17信号通路、PI3K-Akt信号通路、Th17细胞分化、TNF信号通路等相关,分子对接结果显示,豆甾醇、β-谷甾醇与核心靶点有较好的结合性。结论通过网络药理学和分子对接技术初步探讨TCM-EAN1对于唇炎的作用机制,为今后临床治疗提供科学依据。 展开更多
关键词 唇炎 网络药理学 分子对接 中药外敷1
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Simiao Wan alleviates obesity-associated insulin resistance via PKCε/IRS-1/PI3K/Akt signaling pathway based on network pharmacology analysis and experimental validation
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作者 Jing Jin Yin-Yue Xu +3 位作者 Wen-Ping Liu Ke-Hua Hu Ning Xue Zu-Guo Zheng 《Traditional Medicine Research》 2023年第10期56-68,共13页
Background:The purpose of the study was to investigatethe active ingredients and potential biochemicalmechanisms of Simiao Wan(SMW)in obesity-associated insulin resistance.Methods:An integrated network pharmacology me... Background:The purpose of the study was to investigatethe active ingredients and potential biochemicalmechanisms of Simiao Wan(SMW)in obesity-associated insulin resistance.Methods:An integrated network pharmacology method to screen the active compoundsand candidate targets,construct the protein-protein-interaction network,and ingredients-targets-pathways network was constructed for topological analysis to identify core targets and main ingredients.To find the possible signaling pathways,enrichment analysis was performed.Further,a model of insulin resistance in HL-7702 cells was established to verify the impact of SMW and the regulatory processes.Results:An overall of 63 active components and 151 candidate targets were obtained,in which flavonoids were the main ingredients.Enrichment analysis indicated that the PI3K-Akt signaling pathway was the potential pathway regulated by SMW in obesity-associated insulin resistance treatment.The result showed that SMW could significantly ameliorate insulin sensitivity,increase glucose synthesis and glucose utilization and reduce intracellular lipids accumulation in hepatocytes.Also,SMW inhibited diacylglycerols accumulation-induced PKCεactivity and decreased its translocation to the membrane.Conclusion:SMW ameliorated obesity-associated insulin resistance through PKCε/IRS-1/PI3K/Akt signaling axis in hepatocytes,providing a new strategy for metabolic disease treatment. 展开更多
关键词 Simiao Wan insulin resistance PKCε/IRS-1/PI3K/Akt signaling pathway network pharmacology DAG
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黄芩苷对慢性萎缩性胃炎小鼠JAK1、STAT3表达的影响 被引量:1
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作者 段利颖 朱明阳 +2 位作者 于泳 韩含 丁晔 《广州中医药大学学报》 CAS 2024年第1期200-206,共7页
【目的】通过网络药理学和动物实验探讨黄芩苷对慢性萎缩性胃炎小鼠胃黏膜的修复机制。【方法】(1)应用网络药理学预测分析黄芩苷治疗慢性萎缩性胃炎的潜在关键靶点。(2)动物实验:将40只C57BL/6N小鼠随机分为正常组、模型组、维酶素组... 【目的】通过网络药理学和动物实验探讨黄芩苷对慢性萎缩性胃炎小鼠胃黏膜的修复机制。【方法】(1)应用网络药理学预测分析黄芩苷治疗慢性萎缩性胃炎的潜在关键靶点。(2)动物实验:将40只C57BL/6N小鼠随机分为正常组、模型组、维酶素组、黄芩苷组,每组10只。除正常组,其他3组小鼠采用N-甲基-N’-硝基-N-亚硝基胍(MNNG)灌胃结合饥饱失常法构建慢性萎缩性胃炎模型。给药结束后,采用苏木素-伊红(HE)染色法观察胃黏膜组织病理变化,采用酶联免疫吸附法(ELISA)检测血清中胃泌素(GAS)和前列腺素E2(PGE2)水平变化,采用实时荧光定量聚合酶链反应(qRT-PCR)法和蛋白免疫印迹(Western Blot)法检测胃黏膜组织中Janus酪氨酸激酶1(JAK1)、信号转导和转录激活子3(STAT3)的mRNA与蛋白表达水平。【结果】网络药理学结果显示,黄芩苷与核心靶点JAK1、STAT3可自发结合。动物实验结果显示:与正常组比较,模型组小鼠胃黏膜组织发生萎缩,腺体排列紊乱,存在大量淋巴细胞,胃黏膜细胞凋亡指数显著升高(P<0.05),血清中GAS与PGE2水平显著降低(P<0.05),胃黏膜组织中JAK1、STAT3的mRNA与蛋白表达水平显著升高(P<0.05);与模型组比较,维酶素组与黄芩苷组小鼠胃黏膜病变减轻,腺体排列相对整齐,结构较完整,胃黏膜细胞凋亡指数显著降低(P<0.05),血清中GAS与PGE2水平显著升高(P<0.05),胃黏膜组织中JAK1、STAT3的mRNA与蛋白表达水平显著降低(P<0.05);黄芩苷组上述各指标与维酶素组比较,差异均无统计学意义(P>0.05)。【结论】黄芩苷可有效修复慢性萎缩性胃炎小鼠胃黏膜病变,其机制可能与下调JAK1、STAT3的mRNA及蛋白表达有关。 展开更多
关键词 黄芩苷 慢性萎缩性胃炎 胃黏膜 Janus酪氨酸激酶1(JAK1) 信号转导和转录激活子3(STAT3) 网络药理学 小鼠
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Ultra reliability and massive connectivity provision in integrated internet of military things(IoMT)based on tactical datalink
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作者 Li Bing Yating Gu +4 位作者 Lanke Hu Li Bowen Yang Lihua Jue Wang Yue Yin 《Defence Technology(防务技术)》 SCIE EI CAS CSCD 2024年第3期386-398,共13页
One of the major challenges arising in internet of military things(IoMT)is accommodating massive connectivity while providing guaranteed quality of service(QoS)in terms of ultra-high reliability.In this regard,this pa... One of the major challenges arising in internet of military things(IoMT)is accommodating massive connectivity while providing guaranteed quality of service(QoS)in terms of ultra-high reliability.In this regard,this paper presents a class of code-domain nonorthogonal multiple accesses(NOMAs)for uplink ultra reliable networking of massive IoMT based on tactical datalink such as Link-16 and joint tactical information distribution system(JTIDS).In the considered scenario,a satellite equipped with Nr antennas servers K devices including vehicles,drones,ships,sensors,handset radios,etc.Nonorthogonal coded modulation,a special form of multiple input multiple output(MIMO)-NOMA is proposed.The discussion starts with evaluating the output signal to interference-plus-noise(SINR)of receiver filter,leading to the unveiling of a closed-form expression for overloading systems as the number of users is significantly larger than the number of devices admitted such that massive connectivity is rendered.The expression allows for the development of simple yet successful interference suppression based on power allocation and phase shaping techniques that maximizes the sum rate since it is equivalent to fixed-point programming as can be proved.The proposed design is exemplified by nonlinear modulation schemes such as minimum shift keying(MSK)and Gaussian MSK(GMSK),two pivotal modulation formats in IoMT standards such as Link-16 and JITDS.Numerical results show that near capacity performance is offered.Fortunately,the performance is obtained using simple forward error corrections(FECs)of higher coding rate than existing schemes do,while the transmit power is reduced by 6 dB.The proposed design finds wide applications not only in IoMT but also in deep space communications,where ultra reliability and massive connectivity is a keen concern. 展开更多
关键词 Satellite network Deep space communications Internet of military things Non-orthogonal multiple access MIMO LINK-16 JITDS
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基于BP神经网络模型优化Fe_(1-x)O基氨合成催化剂
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作者 张书铭 刘化章 《化工进展》 EI CAS CSCD 北大核心 2024年第3期1302-1308,共7页
运用BP神经网络建立了助催化剂含量与催化剂活性之间的预测模型,对Fe_(1-x)O基氨合成催化剂的助催化剂进行优化。首先将前期实验数据整理归纳为含有3、4、5、6和7个助催化剂等5类催化剂,以助催化剂含量(体积分数)为输入变量,以425℃反... 运用BP神经网络建立了助催化剂含量与催化剂活性之间的预测模型,对Fe_(1-x)O基氨合成催化剂的助催化剂进行优化。首先将前期实验数据整理归纳为含有3、4、5、6和7个助催化剂等5类催化剂,以助催化剂含量(体积分数)为输入变量,以425℃反应器出口氨浓度(活性)为输出变量,对助催化剂进行优化。结果表明,BP神经网络预测模型拟合值均方误差最高为0.2784,预测值均方误差最高为0.1592,构建的BP神经网络模型准确度较高。在该模型的基础上,运用多种群遗传算法进行极值寻优,求解最优的催化剂配方,并进行实验验证。结果表明,根据优化结果制备5个样品的实验测定值与预测值的相对误差最高为2.88%,优化结果较为准确;含有7个助催化剂的催化剂活性最高为18.83%,比原样本的统计平均活性值(17.52%)高1.31%,相对提高7.48%,助催化剂含量优化取得满意的结果。 展开更多
关键词 Fe_(1-x)O 催化剂 助催化剂 神经网络 遗传算法 优化
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Inhibitory effect of saffron on head and neck squamous cell carcinoma via targeting of ESR1 and CCND1 by its active compound crocetin
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作者 Xiao-Jie Wang Ming-Jun Zhang +7 位作者 Li-Mei Cui Zhe-Ying Song Ya-Qi Wang Yu-Teng Yang Xiang-Kun Zhao Ya-Kui Mou Yu-Mei Li Xi-Cheng Song 《Traditional Medicine Research》 2024年第7期25-34,共10页
Background:Traditional Chinese medicine is promising for managing challenging and complex disorders,including cancer,and in particular,saffron is applied in treating various cancer types.However,its potential therapeu... Background:Traditional Chinese medicine is promising for managing challenging and complex disorders,including cancer,and in particular,saffron is applied in treating various cancer types.However,its potential therapeutic efficacy and active components in managing squamous cell carcinoma of the head and neck(HNSCC)remain unclear yet.Methods:Using network pharmacology approaches,active ingredients of saffron,their target genes,and HNSCC-related genes were identified.Enrichment analyses were conducted for determining molecular functions and pathways enriched by genes that overlapped between the saffron target gene set and the HNSCC gene set.Among the four known active ingredients of saffron,crocetin was found to have the strongest inhibitory impact on HNSCC,based on the findings of cell viability and migration assays.Therefore,the potential target genes of crocetin in HNSCC cells were examined using molecular docking experiments and were confirmed by qPCR.Result s:Four active ingredients of saffron and 184 of their target genes were identified.Further,a total of 34 overlapping saffron-/HNSCC-associated targets related to the four active ingredients were screened,and crocetin was chosen for further investigation because it had the strongest inhibitory effect on HNSCC cells.Molecular docking experiments indicated that ESR1 and CCND1 were the target genes of crocetin.These results were confirmed through qPCR analysis,in which crocetin was found to lower the expression of the ESR1 and CCND1 genes in AMC-HN-8 and FaDu cells.Conclusion:According to our results,crocetin is a primary active anti-cancer component of saffron that may have potential in the development of novel HNSCC-treating medications.However,more thorough molecular research is necessary for confirming these results and elucidating the anti-cancer mechanism underlying saffron. 展开更多
关键词 SAFFRON hub genes CROCETIN network pharmacology analysis HNSCC ESR1 CCND1
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Prediction of Potential Drug Activity and Therapeutic Targets of a Natural Compound Niga-ichigoside F1 Based on Network Pharmacology and Molecular Docking
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作者 刘杰 周海燕 +1 位作者 许滔 刘兴德 《World Journal of Integrated Traditional and Western Medicine》 2023年第1期40-48,共9页
Objective:To study the drug activity and therapeutic targets of Niga-ichigoside F1 predicted based on network pharmacology and molecular docking.Methods:Download the 2D and 3D structures of Niga-ichigoside F1 from the... Objective:To study the drug activity and therapeutic targets of Niga-ichigoside F1 predicted based on network pharmacology and molecular docking.Methods:Download the 2D and 3D structures of Niga-ichigoside F1 from the PubChem database for target prediction and molecular docking,respectively.Target information was predicted by PharmMapper and swiss ADME databases,target gene names were extracted and rechecked by Uniprot database,and disease information corresponding to target was queried by TTD database.The enrichment analysis of GO and KEGG signal pathway was conducted by Metascape database.AutoDuck Vina was used for molecular docking of Niga-ichigoside F1 3D structure with key proteins of related diseases and common pathways.Finally,the conformation of molecular docking was visualized by PyMOL.Results:A total of 34 targets and 69 related disease information were obtained from the database screening.The targets with high degree of acquisition of the association network between target and disease were AR,F2,VDR,PDE10A,mTOR,and NR3C2,etc..Diseases with a high degree of relief were solid tumour,breast cancer, acute myeloid leukemia, hypertension, and thrombocytopenia,etc..The items with significance in GO analysis included positive regulation of transferase activity,protein autophosphorylation,negative regulation of cGMP-mediated signaling,intracellular receptor signaling pathway,regulation of cellular response to stress,blood vessel development,reactive oxygen species metabolic process,negative regulation of immune response,regulation of transcription from RNA polymerase Ⅱ promoter in response to stress,and nucleobase-containing small molecule metabolic process,etc..The items with significance in KEGG enrichment analysis(P<0.01) included Pathways in cancer,Purine metabolism,Focal adhesion,MAPK signaling pathway,GnRH signaling pathway,AGE-RAGE signaling pathway in diabetic complications,Ras signaling pathway,Leukocyte transendothelial migration and Platelet activation,etc..Molecular docking suggested that the target of Niga-ichigoside F1 had good binding ability with related diseases and key proteins of common pathways.Conclusion:According to the results of network pharmacology and molecular docking,Niga-ichigoside F1 has rich drug activity and may act on a variety of diseases.After comprehensive analysis, we proposed for the first time the high correlation between Niga-ichigoside F1 and cancer,as well as the possible association with acute myeloid leukemia and hypertension.It has the characteristics of multi-target and multi-pathway,which is worthy of further research,development and utilization. 展开更多
关键词 Niga-ichigoside F1 Prediction targets network pharmacology Molecular docking
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广西崇左市扶绥县HIV-1分子传播网络特征分析
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作者 何锦锋 李牧 +9 位作者 覃雪秋 黄玲芳 区艳芸 农爱丹 黄英贵 白永刚 邹华春 张伟杰 包丽娟 梁冰玉 《广西医科大学学报》 CAS 2024年第6期918-925,共8页
目的:分析广西崇左市扶绥县艾滋病病毒(HIV)感染者的分子传播网络特征,并确定造成分子网络聚簇传播和高风险传播的危险因素。方法:采集崇左市扶绥县2005—2021年确诊的HIV/艾滋病(AIDS)患者血样。通过扩增HIV-1 pol区序列比对分析,构建... 目的:分析广西崇左市扶绥县艾滋病病毒(HIV)感染者的分子传播网络特征,并确定造成分子网络聚簇传播和高风险传播的危险因素。方法:采集崇左市扶绥县2005—2021年确诊的HIV/艾滋病(AIDS)患者血样。通过扩增HIV-1 pol区序列比对分析,构建分子传播网络。运用二元logistic回归分析入网和高危传播的影响因素。结果:本研究共获得扶绥县349条HIV-1 pol区序列,6种亚型,分别为CRF01_AE亚型(49.86%)、CRF07_BC亚型(32.38%)、CRF08_BC亚型(14.33%)、CRF55_01B亚型(1.14%)、C亚型(0.29%)、独特重组型(URF)(2.00%)。192条(55.01%)序列进入分子传播网络,形成31个簇、192个节点和736条边。年龄>50岁(a OR=1.861,95%CI:1.009~3.433)、感染CRF07_BC亚型毒株(a OR=4.386,95%CI:2.533~7.594)、文化程度为小学及以下(a OR=1.709,95%CI:1.070~2.729)、有非婚商业异性性接触史(a OR=1.682,95%CI:1.027~2.753),配偶或固定性伴阳性(a OR=2.428,95%CI:1.181~4.995)的患者更容易进入传播网络聚簇传播。年龄>50岁(a OR=1.861,95%CI:1.009~3.433),感染CRF07_BC亚型(a OR=4.386,95%CI:2.533~7.594),文化程度为小学及以下(a OR=1.699,95%CI:1.004~2.874)的患者更容易成为传播网络中的高连接者。结论:广西崇左市扶绥县AIDS传播的关键人群是年龄>50岁且文化程度为小学及以下的中老年人群,应针对重点人群的在分子网络中的传播聚簇特点进行溯源调查,并实施精准干预,减少二代传播。 展开更多
关键词 艾滋病病毒-1 分子传播网络 高危传播者 影响因素
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猪睾丸Dickkopf样顶体蛋白1基因的转录调控分析
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作者 许静 代红梅 +6 位作者 张霞 刘志朋 杨忠 李卫真 付仕颖 克比努尔·库尔班 霍金龙 《福建农林大学学报(自然科学版)》 CAS CSCD 北大核心 2024年第1期79-88,共10页
【目的】Dickkopf样顶体蛋白1(DKKL1)是一种重要的顶体蛋白,为发掘其重要功能及潜在的临床价值,以版纳微型猪近交系(BMI)为对象,研究其睾丸组织中DKKL1的分子结构、转录调控特征和蛋白质功能。【方法】通过全转录组测序获得BMI DKKL1的... 【目的】Dickkopf样顶体蛋白1(DKKL1)是一种重要的顶体蛋白,为发掘其重要功能及潜在的临床价值,以版纳微型猪近交系(BMI)为对象,研究其睾丸组织中DKKL1的分子结构、转录调控特征和蛋白质功能。【方法】通过全转录组测序获得BMI DKKL1的表达量,使用逆转录聚合酶链反应(RT-PCR)获得DKKL1编码区序列并分析其基因结构和蛋白质特征,使用UniProt数据库对DKKL1进行功能注释并分析DKKL1与微小RNA(miRNA)、长链非编码RNA(lncRNA)间的竞争性内源RNA(ceRNA)转录调控。【结果】获得的BMI DKKL1编码区全长为702 bp,位于基因第6号染色体上,有5个外显子和4个内含子;蛋白质功能分析表明,DKKL1包含233个氨基酸,具有疏水性,含磷酸化位点、信号肽和较多的无规则卷曲亚结构;系统进化和同源性分析表明,DKKL1氨基酸序列在哺乳动物间高度保守;蛋白互作分析显示,DKKL1与含螺旋结构域的蛋白155(CCDC155)、转录增强缔合域蛋白2(TEAD2)、RAS癌基因家族成员11B(RAB11B)等多种蛋白互作;基因本体(GO)和京都基因与基因组百科全书(KEGG)富集分析表明,这些蛋白富集在典型Wnt信号等通路上;GO功能注释表明,DKKL1在睾酮生物合成过程的负向调控、透明带穿透、顶体泡生成等方面具有重要功能;ceRNA转录调控网络分析表明,DKKL1被miR-15a和miR-15b靶向调控。【结论】本研究获得了BMI睾丸全转录数据,阐明了DKKL1的分子特征、蛋白质功能并构建了转录调控网络。 展开更多
关键词 版纳微型猪近交系 Dickkopf样顶体蛋白1 分子特征 蛋白互作 调控网络
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Network pharmacology and molecular docking analysis reveal insights into the molecular mechanism of Gualou Qumai Wan in clear cell renal cell carcinoma
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作者 Zhi-Qiang Wang Zhen-Yu Mu +4 位作者 Bo Yang Tao Wang Zhi-Yong Su Shan-Chun Guo Jiang-Xia Yin 《TMR Modern Herbal Medicine》 CAS 2024年第2期11-18,共8页
Background:To initially clarify the potential therapeutic targets and pharmacological mechanism regarding Gualou Qumai Wan(GQW),a kind of traditional Chinese medicine(TCM),in clear cell renal cell carcinoma(ccRCC)by v... Background:To initially clarify the potential therapeutic targets and pharmacological mechanism regarding Gualou Qumai Wan(GQW),a kind of traditional Chinese medicine(TCM),in clear cell renal cell carcinoma(ccRCC)by virtue of the network pharmacology analysis and molecular docking analysis.Methods:The screening of bioactive components and targets of GQW was based on the Traditional Chinese Medicine System Pharmacology(TCMSP)and the UniProt platform served for standardizing their targets.Online Mendelian Inheritance in Man(OMIM),PharmGkb,TTD,DrugBank and GeneCards databases were searched to collect the disease targets of ccRCC.Cytoscape assisted in constructing herb-compound-target(H-C-T)networks.The STRING database was searched for constructing the target protein-protein interaction(PPI)networks,while the R programming language served for analyzing GO functional terms and the KEGG pathways related to potential targets.Analyses of core genes related to survival and tumor microenvironment(TME)were conducted respectively based on the GEPIA2 database and TIMER 2.0 database.Human Protein Atlas(HPA)and The Cancer Genome Atlas(TCGA)helped to obtain core genes’protein expression as well as transcriptome expression level.Autodock Vina software validated the molecular docking regarding GQW components and pivotal targets.Results:The constructed H-C-T networks mainly had 33 compounds and 65 targets.A topological analysis of the PPI network identified that ESR1,AKT1,HIF1A,PTGS2,TP53 and VEGFA serve as core targets in the way GQW affects ccRCC.According to the GO and KEGG pathway enrichment analyses,the effects of GQW are mediated by genes related to hypoxia and oxidative stress as well as the Chemical carcinogenesis-receptor activation and PI3K-Akt signaling pathways.AKT1 shows a close relation to the recruitment of various immune cells and can remarkably affect disease prognosis according to reports.Molecular docking and molecular dynamics simulations showed that diosgenin has higher affinity with core targets.Conclusion:The study makes a comprehensive explanation of the biological activity,potential targets,as well as molecular mechanism regarding GQW against ccRCC,which promisingly assists in revealing the action mechanism of TCM formulae in disease treatment and the respective and scientific basis. 展开更多
关键词 Gualou Qumai Wan AKT1 PI3K-Akt signaling pathway network pharmacology DIOSGENIN clear cell renal cell carcinoma
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基于网络药理学和分子对接技术探究人参皂苷Rb_(1)抗脑缺血再灌注损伤的作用机制
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作者 王玉珠 陈婷婷 李晓宇 《上海医药》 CAS 2024年第11期93-98,119,共7页
目的:通过网络药理学和分子对接技术寻找人参皂苷Rb_(1)抗脑缺血再灌注损伤的可能作用机制,为今后实验研究提供一定的理论依据。方法:通过SuperPred数据库获取人参皂苷Rb_(1)相关作用靶点,利用GEO、GeneCards和OMIM数据库获取脑缺血再... 目的:通过网络药理学和分子对接技术寻找人参皂苷Rb_(1)抗脑缺血再灌注损伤的可能作用机制,为今后实验研究提供一定的理论依据。方法:通过SuperPred数据库获取人参皂苷Rb_(1)相关作用靶点,利用GEO、GeneCards和OMIM数据库获取脑缺血再灌注损伤的异常表达分子,通过交集分析获得人参皂苷Rb_(1)作用于脑缺血再灌注损伤的可能靶点。对所选靶点进行蛋白-蛋白相互作用网络构建、GO功能富集分析和KEGG信号通路富集分析,获得有效靶点的基因和信号通路。最后运用AutoDock软件对关键靶点与人参皂苷Rb_(1)进行分子对接,获得最佳结合靶点。结果:在SuperPred数据库中获得人参皂苷Rb_(1)的潜在作用靶点163个,在GeneCards和OMIM数据库中获得脑缺血再灌注损伤的潜在作用靶点228个,分析后获得14个人参皂苷Rb_(1)与脑缺血再灌注损伤的交集靶点。GO功能富集分析得150个条目,KEGG信号通路富集分析得24条信号通路。分子对接结果显示,人参皂苷Rb_(1)与NFKB1和STAT3有较强的亲和力。结论:人参皂苷Rb_(1)可能通过NFKB1和STAT3信号通路产生抗脑缺血再灌注损伤作用。 展开更多
关键词 脑缺血再灌注损伤 人参皂苷Rb_(1) 网络药理学 分子对接 作用机制
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基于1DCNN-GRU的启闭机液压系统故障诊断
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作者 刘英杰 董詠依 +1 位作者 刘鹏鹏 葛孟伟 《现代制造技术与装备》 2024年第4期169-173,共5页
由于启闭机液压系统内部结构复杂,故障信号不易采集,使用AMESim软件搭建启闭机液压系统仿真模型,构建6种典型故障数据集。基于这些数据集,提出一维卷积神经网络(1 Dimensional Convolutional Neural Network,1DCNN)与门控循环单元(Gated... 由于启闭机液压系统内部结构复杂,故障信号不易采集,使用AMESim软件搭建启闭机液压系统仿真模型,构建6种典型故障数据集。基于这些数据集,提出一维卷积神经网络(1 Dimensional Convolutional Neural Network,1DCNN)与门控循环单元(Gated Recurrent Unit,GRU)相结合的故障诊断方法,利用1DCNN提取信号数据的空间特征和GRU提取信号数据的时间特征,实现对信号数据空间及时间特征的融合,并对融合特征进行分类识别。 展开更多
关键词 启闭机 液压系统 一维卷积神经网络(1DCNN) 门控循环单元(GRU) 特征融合 故障诊断
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用Network Meta分析系统评价GLP-1受体激动剂类降糖药的心血管安全性 被引量:4
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作者 孙凤 郁凯 +4 位作者 武珊珊 张渊 杨智荣 詹思延 史录文 《中国循证心血管医学杂志》 2012年第3期186-193,共8页
目的使用Network Meta分析系统评价胰高血糖素样肽1(GLP-1)受体激动剂类降糖药的心血管安全性。方法系统检索Medline、Embase、Clinical Trials.gov和Cochrane Library数据库(截止2011年10月)中比较GLP-1受体激动剂与其他降糖药物或安... 目的使用Network Meta分析系统评价胰高血糖素样肽1(GLP-1)受体激动剂类降糖药的心血管安全性。方法系统检索Medline、Embase、Clinical Trials.gov和Cochrane Library数据库(截止2011年10月)中比较GLP-1受体激动剂与其他降糖药物或安慰剂的心血管安全性的随机对照研究(RCT),采用传统Meta分析和NetworkMeta分析方法对纳入的RCT的研究结果进行合并。结果共纳入45项研究,15883例糖尿病患者,包括八种干预措施(六种GLP-1类药:艾塞那肽、利拉鲁肽、他司鲁肽、阿必鲁肽、利西拉来和LY2189265,以及安慰剂和传统降糖药),研究总臂数为95。传统Meta分析和Network Meta分析结果相近,均未显示GLP-1受体激动剂与其他降糖药物或安慰剂之间心血管疾病安全性有统计学差异(P均>0.05)。此外,结合直接和间接比较的Network Meta分析显示六种GLP-1类药之间两两比较的心血管安全性也均无统计学差异(P均>0.05)。基于贝叶斯理论的Network Meta分析可对八种干预措施进行排序,显示安慰剂心血管风险最大。结论尽管单个研究报道GLP-1类药有潜在的心血管保护效应,但目前Network Meta分析仍无法定论,仍有待专门设计的大型前瞻性研究加以验证。 展开更多
关键词 GLP-1受体激动剂 2型糖尿病 心血管疾病 network Meta分析 系统评价
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塔里木盆地富满油田富东1井奥陶系重大发现及意义 被引量:8
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作者 王清华 杨海军 +5 位作者 张银涛 李勇 杨宪彰 朱永峰 韩剑发 谢舟 《中国石油勘探》 CAS CSCD 北大核心 2023年第1期47-58,共12页
位于塔里木盆地阿瓦提凹陷—满加尔凹陷过渡带的富东1井在奥陶系鹰山组2段台缘高能滩获得重大突破,对碳酸盐岩内幕区成藏具有重要意义。通过对富东1井成藏条件、储层特征、油气来源的深入研究,明确了富满油田东部深层寒武系玉尔吐斯组... 位于塔里木盆地阿瓦提凹陷—满加尔凹陷过渡带的富东1井在奥陶系鹰山组2段台缘高能滩获得重大突破,对碳酸盐岩内幕区成藏具有重要意义。通过对富东1井成藏条件、储层特征、油气来源的深入研究,明确了富满油田东部深层寒武系玉尔吐斯组供烃、台缘高能滩成储、上覆致密碳酸盐岩成盖的生储盖组合,并建立了“寒武系供烃、次级网状断裂沟通油源、纵向输导、断控台缘高能滩复合油气成藏”新模式。富东1井的成功钻探,证实了台缘高能滩叠合次级网状断裂改造具备成储成藏能力,突破了早期认为的8000m以下超深层碳酸盐岩高能滩的勘探禁区,拓展了断控碳酸盐岩油气藏模式。同时,也是以台缘高能滩体+次级网状断裂油气藏为勘探思路的成功实践,打开了轮南—富满台缘带勘探新局面,有望引领塔里木盆地超深层复杂海相碳酸盐岩的勘探。 展开更多
关键词 塔里木盆地 富满油田 台缘高能滩 次级网状断裂 富东1
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基于LSTM与1DCNN的导弹轨迹预测方法 被引量:4
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作者 宋波涛 许广亮 《系统工程与电子技术》 EI CSCD 北大核心 2023年第2期504-512,共9页
针对弹道导弹等超远程攻击目标的轨迹难以预测的问题,提出一种基于长短期记忆(long short-term memory,LSTM)网络与一维卷积神经网络(1-dimensional convolutional neural network,1DCNN)的目标轨迹预测方法。首先,建立三自由度导弹运... 针对弹道导弹等超远程攻击目标的轨迹难以预测的问题,提出一种基于长短期记忆(long short-term memory,LSTM)网络与一维卷积神经网络(1-dimensional convolutional neural network,1DCNN)的目标轨迹预测方法。首先,建立三自由度导弹运动模型,依据再入类型设计3种目标轨迹数据,构建机动数据库,解决轨迹数据的来源问题。其次,采用重复分割与滑动窗口的方法对轨迹数据进行预处理。然后,基于LSTM与1DCNN设计了一种目标类型分类网络,对目标进行初步分类。最后,基于1DCNN设计轨迹预测网络,对目标轨迹进行预测。仿真结果表明,提出的轨迹预测网络能够完成轨迹预测任务,预测误差在合理范围内。 展开更多
关键词 弹道导弹 目标分类 轨迹预测 长短期记忆网络 一维卷积神经网络
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