Inflammatory bowel diseases (IBD) are complex multifactorial disorders that include Crohn’s disease (CD) and ulcerative colitis (UC). Considering that IBD is a genetic and multifactorial disease, we screened for the ...Inflammatory bowel diseases (IBD) are complex multifactorial disorders that include Crohn’s disease (CD) and ulcerative colitis (UC). Considering that IBD is a genetic and multifactorial disease, we screened for the distribution dynamism of IBD pathogenic genetic variants (single nucleotide polymorphisms;SNPs) and risk factors in four (4) IBD pediatric patients, by integrating both clinical exome sequencing and computational statistical approaches, aiming to categorize IBD patients in CD and UC phenotype. To this end, we first aligned genomic read sequences of these IBD patients to hg19 human genome by using bowtie 2 package. Next, we performed genetic variant calling analysis in terms of single nucleotide polymorphism (SNP) for genes covered by at least 20 read genomic sequences. Finally, we checked for biological and genomic functions of genes exhibiting statistically significant genetic variant (SNPs) by introducing Fitcon genomic parameter. Findings showed Fitcon parameter as normalizing IBD patient’s population variability, as well as inducing a relative good clustering between IBD patients in terms of CD and UC phenotypes. Genomic analysis revealed a random distribution of risk factors and as well pathogenic SNPs genetic variants in the four IBD patient’s genome, claiming to be involved in: i) Metabolic disorders, ii) Autoimmune deficiencies;iii) Crohn’s disease pathways. Integration of genomic and computational statistical analysis supported a relative genetic variability regarding IBD patient population by processing IBD pathogenic SNP genetic variants as opposite to IBD risk factor variants. Interestingly, findings clearly allowed categorizing IBD patients in CD and UC phenotypes by applying Fitcon parameter in selecting IBD pathogenic genetic variants. Considering as a whole, the study suggested the efficiency of integrating clinical exome sequencing and computational statistical tools as a right approach in discriminating IBD phenotypes as well as improving inflammatory bowel disease (IBD) molecular diagnostic process.展开更多
分别将免疫增强剂“禽福”和“Inm una ir”与鸡传染性法氏囊病(IBD)中等毒力活疫苗配合使用,检测免疫雏鸡哈德尔氏腺和盲肠扁桃体T细胞及IgA、IgM和IgG抗体生成细胞数量,泪液、气管液、胆汁、肠液中免疫球蛋白IgG、IgM、IgA含量的动态...分别将免疫增强剂“禽福”和“Inm una ir”与鸡传染性法氏囊病(IBD)中等毒力活疫苗配合使用,检测免疫雏鸡哈德尔氏腺和盲肠扁桃体T细胞及IgA、IgM和IgG抗体生成细胞数量,泪液、气管液、胆汁、肠液中免疫球蛋白IgG、IgM、IgA含量的动态变化,结果发现,应用免疫增强剂IBD疫苗免疫雏鸡上述局部免疫组织及四种局部体液的相应各项免疫检测指标均较IBD疫苗单独免疫雏鸡不同程度地增高,表明免疫增强剂与疫苗联合应用,能显著提高疫苗免疫雏鸡眼部、呼吸道和消化道局部黏膜免疫功能;而IBD强毒攻击后,疫苗单独免疫雏鸡上述指标明显低于应用免疫增强剂的疫苗免疫雏鸡,同时,后者对IBD强毒攻击的有效抵抗力明显高于前者。展开更多
文摘Inflammatory bowel diseases (IBD) are complex multifactorial disorders that include Crohn’s disease (CD) and ulcerative colitis (UC). Considering that IBD is a genetic and multifactorial disease, we screened for the distribution dynamism of IBD pathogenic genetic variants (single nucleotide polymorphisms;SNPs) and risk factors in four (4) IBD pediatric patients, by integrating both clinical exome sequencing and computational statistical approaches, aiming to categorize IBD patients in CD and UC phenotype. To this end, we first aligned genomic read sequences of these IBD patients to hg19 human genome by using bowtie 2 package. Next, we performed genetic variant calling analysis in terms of single nucleotide polymorphism (SNP) for genes covered by at least 20 read genomic sequences. Finally, we checked for biological and genomic functions of genes exhibiting statistically significant genetic variant (SNPs) by introducing Fitcon genomic parameter. Findings showed Fitcon parameter as normalizing IBD patient’s population variability, as well as inducing a relative good clustering between IBD patients in terms of CD and UC phenotypes. Genomic analysis revealed a random distribution of risk factors and as well pathogenic SNPs genetic variants in the four IBD patient’s genome, claiming to be involved in: i) Metabolic disorders, ii) Autoimmune deficiencies;iii) Crohn’s disease pathways. Integration of genomic and computational statistical analysis supported a relative genetic variability regarding IBD patient population by processing IBD pathogenic SNP genetic variants as opposite to IBD risk factor variants. Interestingly, findings clearly allowed categorizing IBD patients in CD and UC phenotypes by applying Fitcon parameter in selecting IBD pathogenic genetic variants. Considering as a whole, the study suggested the efficiency of integrating clinical exome sequencing and computational statistical tools as a right approach in discriminating IBD phenotypes as well as improving inflammatory bowel disease (IBD) molecular diagnostic process.
文摘分别将免疫增强剂“禽福”和“Inm una ir”与鸡传染性法氏囊病(IBD)中等毒力活疫苗配合使用,检测免疫雏鸡哈德尔氏腺和盲肠扁桃体T细胞及IgA、IgM和IgG抗体生成细胞数量,泪液、气管液、胆汁、肠液中免疫球蛋白IgG、IgM、IgA含量的动态变化,结果发现,应用免疫增强剂IBD疫苗免疫雏鸡上述局部免疫组织及四种局部体液的相应各项免疫检测指标均较IBD疫苗单独免疫雏鸡不同程度地增高,表明免疫增强剂与疫苗联合应用,能显著提高疫苗免疫雏鸡眼部、呼吸道和消化道局部黏膜免疫功能;而IBD强毒攻击后,疫苗单独免疫雏鸡上述指标明显低于应用免疫增强剂的疫苗免疫雏鸡,同时,后者对IBD强毒攻击的有效抵抗力明显高于前者。
