With the rapid increase of lubricant consumption, oil contamination becomes more serious. Biotreatment is an important method to remove oil contamination with some advantages. In this study, acclimatized oil- contamin...With the rapid increase of lubricant consumption, oil contamination becomes more serious. Biotreatment is an important method to remove oil contamination with some advantages. In this study, acclimatized oil- contaminated soil and used lubricating oil were sampled to isolate lubricant-degrading strains by several methods. 51 isolates were obtained and 24-well plates were employed to assess bacterial potential in high- throughput screening. The method was noted for the prominence of oil-water two-phase system with saving chemicals, shortening cycles and lessening workloads. In order to decrease inaccuracy, subculture and resting cells were inoculated into mineral salt medium with 200 μ1 oil in well plates for the cultivation at 37 ℃ for 5 and 7 days, and the biodegradation potential was characterized by the changes of oil film and cell density. With appropriate evaluation by shaking flask tests, 5 isolates were retained for their potentials with the maxi- mum biodegradation from 1500 to 2200 mg· L-1 and identified as Acidovorax dtrulli, Pseudomonos balearica, Adnetobacterjohnsonii （two isolates with different biodegradation potentials） and Addovorax avenae using 16S rRNA sequencing analysis. Also, lipase activity was determined using indicator titration and p-nitrophenyl palmitate （p-NPP） methods. The results indicated that only p-NPP was successful to test lipase activity with the range of 1.93-6.29 mg· L-1 Although these five strains could degrade 1000 mg· L-1 lubricating oil in 158-168 h, there existed distinct difference in enzyme activity, which demonstrates that lipase activity could not be used as the criterion to evaluate microbial biodegradation potential for petroleum hydrocarbons.展开更多
The recent advent of robust methods to grow human tissues as 3D organoids allows us to recapitulate the 3D architecture of tumors in an in vitro setting and offers a new orthogonal approach for drug discovery.However,...The recent advent of robust methods to grow human tissues as 3D organoids allows us to recapitulate the 3D architecture of tumors in an in vitro setting and offers a new orthogonal approach for drug discovery.However,organoid culturing with extracellular matrix to support 3D architecture has been challenging for high-throughput screening(HTS)-based drug discovery due to technical difficulties.Using genetically engineered human colon organoids as a model system,here we report our effort to miniaturize such 3D organoid culture with extracellular matrix support in high-density plates to enable HTS.We first established organoid culturing in a 384-well plate format and validated its application in a cell viability HTS assay by screening a 2036-compound library.We further miniaturized the 3D organoid culturing in a 1536-well ultra-HTS format and demonstrated its robust performance for large-scale primary compound screening.Our miniaturized organoid culturing method may be adapted to other types of organoids.By leveraging the power of 3D organoid culture in a high-density plate format,we provide a physiologically relevant screening platform to model tumors to accelerate organoid-based research and drug discovery.展开更多
基金Supported by the National Natural Science Foundation of China(21376285)Chongqing Natural Science Foundation(CSTC2013jcyj A20014)+3 种基金Open Funding Project of the Key Laboratory of Systems BioengineeringMinistry of Educationand Scientific Platform ProjectMinistry of Education(FYKF201506)
文摘With the rapid increase of lubricant consumption, oil contamination becomes more serious. Biotreatment is an important method to remove oil contamination with some advantages. In this study, acclimatized oil- contaminated soil and used lubricating oil were sampled to isolate lubricant-degrading strains by several methods. 51 isolates were obtained and 24-well plates were employed to assess bacterial potential in high- throughput screening. The method was noted for the prominence of oil-water two-phase system with saving chemicals, shortening cycles and lessening workloads. In order to decrease inaccuracy, subculture and resting cells were inoculated into mineral salt medium with 200 μ1 oil in well plates for the cultivation at 37 ℃ for 5 and 7 days, and the biodegradation potential was characterized by the changes of oil film and cell density. With appropriate evaluation by shaking flask tests, 5 isolates were retained for their potentials with the maxi- mum biodegradation from 1500 to 2200 mg· L-1 and identified as Acidovorax dtrulli, Pseudomonos balearica, Adnetobacterjohnsonii （two isolates with different biodegradation potentials） and Addovorax avenae using 16S rRNA sequencing analysis. Also, lipase activity was determined using indicator titration and p-nitrophenyl palmitate （p-NPP） methods. The results indicated that only p-NPP was successful to test lipase activity with the range of 1.93-6.29 mg· L-1 Although these five strains could degrade 1000 mg· L-1 lubricating oil in 158-168 h, there existed distinct difference in enzyme activity, which demonstrates that lipase activity could not be used as the criterion to evaluate microbial biodegradation potential for petroleum hydrocarbons.
基金This research was supported by the NCI Cancer TargetDiscovery and Development(CTD^2)Network(1U01CA217875 toH.F.and 1uo1CA217851 to C.J.K.)the RAS Synthetic LethalNetwork(RSLN+4 种基金1UO1CA199241 to C.J.K.)the Emory LungCancer SPORE(NIH P5OCA217691)the Winship Cancerlnstitute(NIH 5P30CA138292)the Emory WHSC 10x SingleCell Sequencing Seed Grant(X.M.and Y.D.)Emory WoodruffHealth Sciences Center Synergy Award,and the lmagine,lnnovate and Impact(3)Funds from the Emory School ofMedicine and through the Georgia CTSA NIH award(UL1-TRO02378).
文摘The recent advent of robust methods to grow human tissues as 3D organoids allows us to recapitulate the 3D architecture of tumors in an in vitro setting and offers a new orthogonal approach for drug discovery.However,organoid culturing with extracellular matrix to support 3D architecture has been challenging for high-throughput screening(HTS)-based drug discovery due to technical difficulties.Using genetically engineered human colon organoids as a model system,here we report our effort to miniaturize such 3D organoid culture with extracellular matrix support in high-density plates to enable HTS.We first established organoid culturing in a 384-well plate format and validated its application in a cell viability HTS assay by screening a 2036-compound library.We further miniaturized the 3D organoid culturing in a 1536-well ultra-HTS format and demonstrated its robust performance for large-scale primary compound screening.Our miniaturized organoid culturing method may be adapted to other types of organoids.By leveraging the power of 3D organoid culture in a high-density plate format,we provide a physiologically relevant screening platform to model tumors to accelerate organoid-based research and drug discovery.
