对传统乳制品开菲尔发酵剂通过菌种分离和纯化得到67株乳酸菌,经过传统形态学分类区分成6种形态类型。在此基础上进行16S r DNA限制性片段长度多态性聚合酶链反应(polymerase chain reaction-restriction fragment length polymorphism,...对传统乳制品开菲尔发酵剂通过菌种分离和纯化得到67株乳酸菌,经过传统形态学分类区分成6种形态类型。在此基础上进行16S r DNA限制性片段长度多态性聚合酶链反应(polymerase chain reaction-restriction fragment length polymorphism,PCR-RFLP)分析法鉴定为4种分子类型,分别为:乳明串株菌(L.lactis)、坚强肠球菌(E.durans)、意大利肠球菌(E.italicus)、嗜热链球菌(S.thermophilus)。其中坚强肠球菌菌数超过50%,占所分离菌株的62.7%,为优势菌。展开更多
利用26S r DNA D1/D2区序列分析法鉴定了内蒙古牧区传统开菲尔发酵液中的酵母菌,为筛选可发酵特色乳酒的酵母菌奠定基础。对所分离纯化得的酵母菌进行菌落特征和细胞显微形态区分,在形态鉴定基础上,选择代表菌进行26S r DNA D1/D2区序...利用26S r DNA D1/D2区序列分析法鉴定了内蒙古牧区传统开菲尔发酵液中的酵母菌,为筛选可发酵特色乳酒的酵母菌奠定基础。对所分离纯化得的酵母菌进行菌落特征和细胞显微形态区分,在形态鉴定基础上,选择代表菌进行26S r DNA D1/D2区序列分子鉴定。结果表明,共分离到36株酵母菌,形态聚类为5类,经DNA提取、26S r DNA D1/D2区PCR扩增、酶切、基因序列分析和同源性比对,鉴定为5种分子类型的酵母菌,分别为胶红酵母菌(Rhodotorula mucilaginosa)、诞沫假丝酵母菌(Candida zeylanoides)、发酵毕赤酵母菌(Pichia fermentans)、酿酒酵母菌(Saccharomyces cerevisiae)、有孢圆酵母菌(Torulaspora delbrueckii)。传统开菲尔发酵液中分离到的酿酒酵母,具有可发酵特色乳酒的潜质。展开更多
Recent advances in the field of microbial and medical ecology emphasize the critical role played by oral bacteria in the delicate dynamic equilibrium of human health and disease, creating the need to define the bacter...Recent advances in the field of microbial and medical ecology emphasize the critical role played by oral bacteria in the delicate dynamic equilibrium of human health and disease, creating the need to define the bacterial communities associated with healthy and non-healthy conditions and to capture shifts in community structure germane to diagnosis. Employing PCR-RFLP of the 16S rDNA gene from metagenomes and plate-wash (cultured) bacteria of oral wash from 10 volunteers, this study evaluated the stability of oral bacteria in healthy subjects and documented community shifts in smokers. Sequence analysis of selected 16S gene amplicons cloned with the Gene Hunter PCR-Trap vector and pCR 4-TOPO cloning kits was conducted to determine the bacteria identity and diversity indices of the two groups. Ribopatterns generated by the restriction enzymes HaeIII and Sau3AI were significantly (p AluI using the GelCompare II software cluster analysis. A stable core of bacteria DNA fingerprint was detected in all healthy subjects, and remained unchanged over the study period of 3 months. Signature bands (1500 bp with HaeIII) in smokers and in non-smokers (800 bp and 700 bp with Sau3A1) were evidently suggesting the presence of potential biomarkers of healthy and non-healthy states. There was no significant difference in the DNA fingerprints of cultured and metagenomic extracts. The genera Xanthomonas, Streptococcus and phylum Candidatus occurred in large numbers in both groups, however, a major shift in composition with the dominance of gram-negative bacteria in smokers compared to healthy subjects was quite remarkable. Taxonomic diversity in smokers was quite high, including members of the genera Rothia, Synechococcus, Neisseria, Thiomargarita and Pyrobaculum. These data highlight the presence of a stable core microbiome amidst a wide diversity, identify a distinct smokers’ cluster and open the way for the search for potential biomarkers for specific diseases.展开更多
采用PCR-RFLP技术分析一年内不同深度橡胶林土壤真菌区系的变化。结果表明,随着时间和土壤深度的变化,真菌18S r DNA的PCR-RFLP图谱存在着一定的差异。相同时间不同取样深度的土壤样品酶切产生的强亮带略有差异,同时,随土壤深度的增加,...采用PCR-RFLP技术分析一年内不同深度橡胶林土壤真菌区系的变化。结果表明,随着时间和土壤深度的变化,真菌18S r DNA的PCR-RFLP图谱存在着一定的差异。相同时间不同取样深度的土壤样品酶切产生的强亮带略有差异,同时,随土壤深度的增加,橡胶土样酶切条带相似性整体增大,说明自然状态下橡胶林土壤的真菌多样性受到土壤垂直分布的影响,优势真菌种群随土壤深度的变化略有差异。而对于不同时间相同取样深度的橡胶林土壤,土壤样品酶切后产生的强亮带有所变化,但3种取样深度下的变化趋势基本相同,1-12月份橡胶土样酶切条带相似性各不相同,表明在自然状态下,橡胶林土壤中真菌多样性会随着时间变化而变化。一些优势真菌类群和非优势真菌类群在不同时间会存在交替,可能和物候有着直接的联系。PCR-RFLP技术能准确反映土壤微生物的动态变化,为进一步研究橡胶林土壤微生物群落结构和分类,生物多样性和生态系统功能的影响提供基础资料。展开更多
文摘对传统乳制品开菲尔发酵剂通过菌种分离和纯化得到67株乳酸菌,经过传统形态学分类区分成6种形态类型。在此基础上进行16S r DNA限制性片段长度多态性聚合酶链反应(polymerase chain reaction-restriction fragment length polymorphism,PCR-RFLP)分析法鉴定为4种分子类型,分别为:乳明串株菌(L.lactis)、坚强肠球菌(E.durans)、意大利肠球菌(E.italicus)、嗜热链球菌(S.thermophilus)。其中坚强肠球菌菌数超过50%,占所分离菌株的62.7%,为优势菌。
文摘利用26S r DNA D1/D2区序列分析法鉴定了内蒙古牧区传统开菲尔发酵液中的酵母菌,为筛选可发酵特色乳酒的酵母菌奠定基础。对所分离纯化得的酵母菌进行菌落特征和细胞显微形态区分,在形态鉴定基础上,选择代表菌进行26S r DNA D1/D2区序列分子鉴定。结果表明,共分离到36株酵母菌,形态聚类为5类,经DNA提取、26S r DNA D1/D2区PCR扩增、酶切、基因序列分析和同源性比对,鉴定为5种分子类型的酵母菌,分别为胶红酵母菌(Rhodotorula mucilaginosa)、诞沫假丝酵母菌(Candida zeylanoides)、发酵毕赤酵母菌(Pichia fermentans)、酿酒酵母菌(Saccharomyces cerevisiae)、有孢圆酵母菌(Torulaspora delbrueckii)。传统开菲尔发酵液中分离到的酿酒酵母,具有可发酵特色乳酒的潜质。
文摘Recent advances in the field of microbial and medical ecology emphasize the critical role played by oral bacteria in the delicate dynamic equilibrium of human health and disease, creating the need to define the bacterial communities associated with healthy and non-healthy conditions and to capture shifts in community structure germane to diagnosis. Employing PCR-RFLP of the 16S rDNA gene from metagenomes and plate-wash (cultured) bacteria of oral wash from 10 volunteers, this study evaluated the stability of oral bacteria in healthy subjects and documented community shifts in smokers. Sequence analysis of selected 16S gene amplicons cloned with the Gene Hunter PCR-Trap vector and pCR 4-TOPO cloning kits was conducted to determine the bacteria identity and diversity indices of the two groups. Ribopatterns generated by the restriction enzymes HaeIII and Sau3AI were significantly (p AluI using the GelCompare II software cluster analysis. A stable core of bacteria DNA fingerprint was detected in all healthy subjects, and remained unchanged over the study period of 3 months. Signature bands (1500 bp with HaeIII) in smokers and in non-smokers (800 bp and 700 bp with Sau3A1) were evidently suggesting the presence of potential biomarkers of healthy and non-healthy states. There was no significant difference in the DNA fingerprints of cultured and metagenomic extracts. The genera Xanthomonas, Streptococcus and phylum Candidatus occurred in large numbers in both groups, however, a major shift in composition with the dominance of gram-negative bacteria in smokers compared to healthy subjects was quite remarkable. Taxonomic diversity in smokers was quite high, including members of the genera Rothia, Synechococcus, Neisseria, Thiomargarita and Pyrobaculum. These data highlight the presence of a stable core microbiome amidst a wide diversity, identify a distinct smokers’ cluster and open the way for the search for potential biomarkers for specific diseases.
文摘采用PCR-RFLP技术分析一年内不同深度橡胶林土壤真菌区系的变化。结果表明,随着时间和土壤深度的变化,真菌18S r DNA的PCR-RFLP图谱存在着一定的差异。相同时间不同取样深度的土壤样品酶切产生的强亮带略有差异,同时,随土壤深度的增加,橡胶土样酶切条带相似性整体增大,说明自然状态下橡胶林土壤的真菌多样性受到土壤垂直分布的影响,优势真菌种群随土壤深度的变化略有差异。而对于不同时间相同取样深度的橡胶林土壤,土壤样品酶切后产生的强亮带有所变化,但3种取样深度下的变化趋势基本相同,1-12月份橡胶土样酶切条带相似性各不相同,表明在自然状态下,橡胶林土壤中真菌多样性会随着时间变化而变化。一些优势真菌类群和非优势真菌类群在不同时间会存在交替,可能和物候有着直接的联系。PCR-RFLP技术能准确反映土壤微生物的动态变化,为进一步研究橡胶林土壤微生物群落结构和分类,生物多样性和生态系统功能的影响提供基础资料。
