应用构建的5.8S r DNA-ITS基因克隆文库法,分析冬瓜腌制体系不同时期酵母菌的多样性、优势菌种及相关指标的变化。结果表明:冬瓜腌制过程中酵母菌种类丰富,随着腌制时间的不同,卤水中酵母菌组成存在较大差异。腌制早期优势酵母菌为普鲁...应用构建的5.8S r DNA-ITS基因克隆文库法,分析冬瓜腌制体系不同时期酵母菌的多样性、优势菌种及相关指标的变化。结果表明:冬瓜腌制过程中酵母菌种类丰富,随着腌制时间的不同,卤水中酵母菌组成存在较大差异。腌制早期优势酵母菌为普鲁兰类酵母,腌制中、后期,酵母菌群中优势菌种转变为热带假丝酵母。此外,冬瓜腌制过程中酵母菌数量和p H也相应地发生变化。本研究结果为研究酵母菌对浙东传统腌制蔬菜品质的影响提供微生物学基础。展开更多
To evaluate the relationship between salinity tolerance and genetic diversity of plankton,we collected a wild species of plankton from Taipingjiao,Qingdao.The fragment of ITS1-5.8S rDNA-ITS2 was extracted and sequence...To evaluate the relationship between salinity tolerance and genetic diversity of plankton,we collected a wild species of plankton from Taipingjiao,Qingdao.The fragment of ITS1-5.8S rDNA-ITS2 was extracted and sequenced.The results showed that the plankton belongs to Oxyrrhis marina.The salinity tolerance of O.marina ranges from 4 to 60.Seven selected groups were built up to evaluate salinity tolerance and to assess genetic diversity by RAPD.The salinity tolerance comparison revealed considerable differences among groups:the strains of O.marina in group 4 could survive under salinity from 4 to 32,while the strains selected for salinity 60 died under the salinity lower than 16.Analysis of genetic diversity of the seven groups showed that the mean genetic diversity index value was 0.28,but it was only 0.16 in selected group of 4 and was 0.24 for group 60.The result of AMOVA suggested a significantly positive relationship between the salinity tolerance and genetic diversity of O.marina (P<0.01).This study indicates that consideration of intraspecific genetic divergence in O.marina might be indispensable when using it as a model in the study of salinity tolerance of wild plankton.展开更多
In this paper, we examined the detailed morphology of two strains of Prorocentrum isolated from the coastal waters of Zhejiang (Wenling area), China, and Masan Bay of Korea. A taxonomic comparison was made among strai...In this paper, we examined the detailed morphology of two strains of Prorocentrum isolated from the coastal waters of Zhejiang (Wenling area), China, and Masan Bay of Korea. A taxonomic comparison was made among strains on the basis of morphological and molecular data. The cellular dimensions of the Chinese Wenling strain (LAMB090508) and Korean strain (PDKS0206) were similar and the cells of both strains were of asymmetric and elongated shape. The posterior end of most cells was rounded. Megacytic zones of aged cells were broader with dense tiny knobs. The roundish nucleus was located in the posterior part of the cell. A few irregular shaped chloroplasts were distributed within the cell. The nucleotide similarity of the two strains, determined from the 5.8S rDNA-ITS sequences, was 99.83%. The comparative results of morphology and molecular analysis suggest that both strains isolated from China and Korea were the identical species, Prorocentrum donghaiense Lu.展开更多
The 5.8 S ribosomal DNA sequences (5.8S rDNA) and their flanking regions, internal transcribed spacer 1 and spacer 2 (ITS1 and ITS2) of three new isolates in genus Alexandrium (Alexandrium sp. qd1, Alexandrium sp. qd2...The 5.8 S ribosomal DNA sequences (5.8S rDNA) and their flanking regions, internal transcribed spacer 1 and spacer 2 (ITS1 and ITS2) of three new isolates in genus Alexandrium (Alexandrium sp. qd1, Alexandrium sp. qd2, Alexandrium sp. gz) from China were amplified, sequenced, and subjected to phylogenetic analysis. Alexandrium sp. gz and Alexandrium sp. qd1 were grouped with high bootstrap values with four strains/species, i.e., A. catenella South Korea strain, A. catenella Japan strain, and two from China, Alexandrium sp. AC03 and Alexandrium sp. AN01 being proposed to be A. catenalla in a previous study. Then Alexandrium sp. gz and Alexandrium sp. qd1 were identified as Alexandrium catenella. As A. catenella was isolated from Qingdao and Guangzhou sea areas, it supposedly distributed at least in these two areas and was genetically different. Alexandrium sp. qd2 differed greatly from species in Alexandrium. It clustered with Symbiodinium californium, Symbiodinium sp. G15 and Gymnodinium sp. Zhao 01 with 100% bootstrap value; so Alexandrium sp. qd2 affiliates to genus Symbiodinium, and is probably a free-living Symbiodinium species.展开更多
A facultative heterotrophic strain (DS-0205) was isolated from a deep-sea sediment sample collected at a depth of 5.2 km in the eastern Pacific Ocean, China. Strain DS-0205 is motile helmet-like single cell or pairs...A facultative heterotrophic strain (DS-0205) was isolated from a deep-sea sediment sample collected at a depth of 5.2 km in the eastern Pacific Ocean, China. Strain DS-0205 is motile helmet-like single cell or pairs, forming hemisphere with the center sunken of variable size. It has a widespread carbon source and nitrogen source, including agarose, citric acid, salicin, D-glucitol nitrate, sodium nitrite and cthylamine, tt can grow in the following environment: temperature 4-37℃, pH 2.0-12.0, tolerance to NaCl≤15%. Two phylogenetic trees, one based on the ITS and 5.8S rRNA sequences and the other based on the 18S rRNA sequences, unite strain DS-0205(=JCM 0205) to the type strain of Rhodosporidium diobovatum JCM 3787 through a considerable evolutionary distance. These results suggest that strain DS-0205 is a new strain of the Rhodosporidium diobovatum.展开更多
文摘应用构建的5.8S r DNA-ITS基因克隆文库法,分析冬瓜腌制体系不同时期酵母菌的多样性、优势菌种及相关指标的变化。结果表明:冬瓜腌制过程中酵母菌种类丰富,随着腌制时间的不同,卤水中酵母菌组成存在较大差异。腌制早期优势酵母菌为普鲁兰类酵母,腌制中、后期,酵母菌群中优势菌种转变为热带假丝酵母。此外,冬瓜腌制过程中酵母菌数量和p H也相应地发生变化。本研究结果为研究酵母菌对浙东传统腌制蔬菜品质的影响提供微生物学基础。
文摘To evaluate the relationship between salinity tolerance and genetic diversity of plankton,we collected a wild species of plankton from Taipingjiao,Qingdao.The fragment of ITS1-5.8S rDNA-ITS2 was extracted and sequenced.The results showed that the plankton belongs to Oxyrrhis marina.The salinity tolerance of O.marina ranges from 4 to 60.Seven selected groups were built up to evaluate salinity tolerance and to assess genetic diversity by RAPD.The salinity tolerance comparison revealed considerable differences among groups:the strains of O.marina in group 4 could survive under salinity from 4 to 32,while the strains selected for salinity 60 died under the salinity lower than 16.Analysis of genetic diversity of the seven groups showed that the mean genetic diversity index value was 0.28,but it was only 0.16 in selected group of 4 and was 0.24 for group 60.The result of AMOVA suggested a significantly positive relationship between the salinity tolerance and genetic diversity of O.marina (P<0.01).This study indicates that consideration of intraspecific genetic divergence in O.marina might be indispensable when using it as a model in the study of salinity tolerance of wild plankton.
基金Supported by the National High Technology Research and Development Program of China (863 Program) (No. 2007AA09Z110)the National Basic Research Program of China (973 Program) (No. 2010CB428702)+2 种基金Foundation of SOA (Nos. 201005031, 2009123)the Basic Research Fund of SIO (No. JG200818)Joint Project between Germany and China supported by International Bureau of BMBF at DLR (No. CHN 06/009)
文摘In this paper, we examined the detailed morphology of two strains of Prorocentrum isolated from the coastal waters of Zhejiang (Wenling area), China, and Masan Bay of Korea. A taxonomic comparison was made among strains on the basis of morphological and molecular data. The cellular dimensions of the Chinese Wenling strain (LAMB090508) and Korean strain (PDKS0206) were similar and the cells of both strains were of asymmetric and elongated shape. The posterior end of most cells was rounded. Megacytic zones of aged cells were broader with dense tiny knobs. The roundish nucleus was located in the posterior part of the cell. A few irregular shaped chloroplasts were distributed within the cell. The nucleotide similarity of the two strains, determined from the 5.8S rDNA-ITS sequences, was 99.83%. The comparative results of morphology and molecular analysis suggest that both strains isolated from China and Korea were the identical species, Prorocentrum donghaiense Lu.
文摘The 5.8 S ribosomal DNA sequences (5.8S rDNA) and their flanking regions, internal transcribed spacer 1 and spacer 2 (ITS1 and ITS2) of three new isolates in genus Alexandrium (Alexandrium sp. qd1, Alexandrium sp. qd2, Alexandrium sp. gz) from China were amplified, sequenced, and subjected to phylogenetic analysis. Alexandrium sp. gz and Alexandrium sp. qd1 were grouped with high bootstrap values with four strains/species, i.e., A. catenella South Korea strain, A. catenella Japan strain, and two from China, Alexandrium sp. AC03 and Alexandrium sp. AN01 being proposed to be A. catenalla in a previous study. Then Alexandrium sp. gz and Alexandrium sp. qd1 were identified as Alexandrium catenella. As A. catenella was isolated from Qingdao and Guangzhou sea areas, it supposedly distributed at least in these two areas and was genetically different. Alexandrium sp. qd2 differed greatly from species in Alexandrium. It clustered with Symbiodinium californium, Symbiodinium sp. G15 and Gymnodinium sp. Zhao 01 with 100% bootstrap value; so Alexandrium sp. qd2 affiliates to genus Symbiodinium, and is probably a free-living Symbiodinium species.
基金Projects(40776035, 40376036) supported by the National Natural Science Foundation of ChinaProject(DY105-02-04-05) supported by the China Ocean Mineral Resources Research and Development Association+2 种基金Project(07MX27) supported by the Mittal Student FoundationProject (2340-74236000003) supported by the Post-graduate Foundation of Hunan Province, ChinaProject (200805330053) supported by the Doctoral Foundation of Ministry of Education of China
文摘A facultative heterotrophic strain (DS-0205) was isolated from a deep-sea sediment sample collected at a depth of 5.2 km in the eastern Pacific Ocean, China. Strain DS-0205 is motile helmet-like single cell or pairs, forming hemisphere with the center sunken of variable size. It has a widespread carbon source and nitrogen source, including agarose, citric acid, salicin, D-glucitol nitrate, sodium nitrite and cthylamine, tt can grow in the following environment: temperature 4-37℃, pH 2.0-12.0, tolerance to NaCl≤15%. Two phylogenetic trees, one based on the ITS and 5.8S rRNA sequences and the other based on the 18S rRNA sequences, unite strain DS-0205(=JCM 0205) to the type strain of Rhodosporidium diobovatum JCM 3787 through a considerable evolutionary distance. These results suggest that strain DS-0205 is a new strain of the Rhodosporidium diobovatum.