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Actinoplanes sp.N902-109全基因组序列测定及分析 被引量:3
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作者 黄鹤 芦现杰 胡海峰 《中国抗生素杂志》 CAS CSCD 北大核心 2015年第3期171-177,共7页
Actinoplanes sp.N902-109是继吸水链霉菌ATCC292953后分离的第二株能够产生雷帕霉素的放线菌。采用Roche 454GS FLX测序技术和Sanger法PCR测序技术,我们首次完成了Actinoplanes sp.N902-109全基因组序列测定。Actinoplanes sp.N902-10... Actinoplanes sp.N902-109是继吸水链霉菌ATCC292953后分离的第二株能够产生雷帕霉素的放线菌。采用Roche 454GS FLX测序技术和Sanger法PCR测序技术,我们首次完成了Actinoplanes sp.N902-109全基因组序列测定。Actinoplanes sp.N902-109基因组为环状,长度为9228054bp,GC含量71.3%,编码8212个蛋白,其中5460个编码蛋白被注释有明确的生物学功能。应用Anti SMASH和NRPS predictor软件预测基因组中存在22个次级代谢生物合成基因簇,包含首次鉴定的完整的游动放线菌来源雷帕霉素生物合成基因簇。利用Mummer和Mauve软件对N902-109和已公布的游动放线菌属Actinoplanes SE50/11 0和Actinoplanes missouriensis 431两株菌株全基因组进行比较分析。通过Actinoplanes sp.N902-109基因注释和比较基因组学分析,在全基因组水平上了解Actinoplanes sp.N902-109的遗传物质基础,为开展Actinoplanes sp.N902-109的代谢调控研究和遗传重组改造奠定基础。 展开更多
关键词 actinoplanes sp.n902-109 基因组测序 雷帕霉素 生物合成基因簇
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Construction of a mutant of Actinoplanes sp. N902-109 that produces a new rapamycin analog 被引量:1
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作者 HUANG He GAO Ping +1 位作者 ZHAO Qi HU Hai-Feng 《Chinese Journal of Natural Medicines》 SCIE CAS CSCD 2018年第3期210-218,共9页
In the present study, we introduced point mutations into Ac_rap A which encodes a polyketide synthase responsible for rapamycin biosynthesis in Actinoplanes sp. N902-109, in order to construct a mutant with an inactiv... In the present study, we introduced point mutations into Ac_rap A which encodes a polyketide synthase responsible for rapamycin biosynthesis in Actinoplanes sp. N902-109, in order to construct a mutant with an inactivated enoylreductase(ER) domain, which was able to synthesize a new rapamycin analog. Based on the homologous recombination induced by double-strand breaks in chromosome mediated by endonuclease I-SceI, the site-directed mutation in the first ER domain of Ac_rapA was introduced using non-replicating plasmid pL YERIA combined with an I-SceI expression plasmid. Three amino acid residues of the active center, Ala-Gly-Gly, were converted to Ala-Ser-Pro. The broth of the mutant strain SIPI-027 was analyzed by HPLC and a new peak with the similar UV spectrum to that of rapamycin was found. The sample of the new peak was prepared by solvent extraction, column chromatography, and crystallization methods. The structure of new compound, named as SIPI-rapxin, was elucidated by determining and analyzing its MS and NMR spectra and its biological activity was assessed using mixed lymphocyte reaction(MLR). An ER domain–deficient mutant of Actinoplanes sp. N902-109, named as SIPI-027, was constructed, which produced a novel rapamycin analog SIPI-rapxin and its structure was elucidated to be 35, 36-didehydro-27-O-demethylrapamycin. The biological activity of SIPI-rapxin was better than that of rapamycin. In conclusion, inactivation of the first ER domain of rap A, one of the modular polyketide synthase responsible for macro-lactone synthesis of rapamycin, gave rise to a mutant capable of producing a novel rapamycin analog, 35, 36-didehydro-27-O-demethylrapamycin, demonstrating that the enoylreductase domain was responsible for the reduction of the double bond between C-35 and C-36 during rapamycin synthesis. 展开更多
关键词 actinoplanes sp. n902-109 RAPAMYCIn Structural analog Polyketide synthase Enoylreductase
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