凡纳滨对虾的主要选育目标分为两个方面:一是培育具有较强抗病、抗逆性的“高抗系”(GK),二是培育具有快速生长特性的“快大系”(KD)。然而,国内缺少针对这两个选育群体的遗传多样性特别是基因组近交水平的调查分析研究。基于液相芯片...凡纳滨对虾的主要选育目标分为两个方面:一是培育具有较强抗病、抗逆性的“高抗系”(GK),二是培育具有快速生长特性的“快大系”(KD)。然而,国内缺少针对这两个选育群体的遗传多样性特别是基因组近交水平的调查分析研究。基于液相芯片“黄海芯1号”(55 K SNP)的基因分型数据,首次分析了GK(1064尾个体)和KD(564尾个体)选育群体的遗传结构和遗传多样性,调查了连续性纯合片段(ROH)的基因组分布特征,并重点评估了两个群体的基因组近交水平。PCA及进化树分析表明GK及KD群体可明确分层,亲缘关系热图表明KD群体内个体间的亲缘关系比GK群体更近。GK群体包括的家系数量更多,导致其遗传多样性高于KD群体;两群体间的F_(st)为0.09,存在中等遗传分化。GK和KD群体每个ROH的平均长度分别为(1.70±0.34)Mb和(1.65±0.38)Mb,每个样本ROH的平均数量分别为1.98±1.30和2.07±1.37。GK和KD群体0.8~1.25 Mb长度的ROH占比分别为11.41%和19.17%,表明KD群体的选育历史比GK群体更长。两个群体>2.25 Mb长度的ROH片段占比分别为10.26和9.74%,表明两个群体短期内未发生近亲交配。七种基因组近交系数评估结果表明,KD群体的近交水平高于GK群体。不依赖基础群体等位基因频率的F_(ROH)和F_(HOM)方法可准确地评价育种群体的真实近交水平,而F_(VR1)、F_(YA1)和F_(LH1)等依赖基础群体等位基因频率的方法可以用来比较群体及个体间的相对近交水平。上述结果为准确地评估育种群体的近交水平和优化育种方案提供了重要参考依据。展开更多
成人发病的白质脑病合并轴索球样变和色素性胶质细胞(adult-onset leukoencephalopathy with axonal spheroids and pigmented glia,ALSP)是临床罕见的常染色体显性遗传病,其具体的发病机制目前还未明确。集落刺激因子1受体(colony-stim...成人发病的白质脑病合并轴索球样变和色素性胶质细胞(adult-onset leukoencephalopathy with axonal spheroids and pigmented glia,ALSP)是临床罕见的常染色体显性遗传病,其具体的发病机制目前还未明确。集落刺激因子1受体(colony-stimulating factor 1 receptor,CSF1R)是一种细胞表面跨膜酪氨酸激酶受体,与其相关的编码基因突变已被证实是ALSP的潜在致病因素。然而,目前关于CSF1R基因突变致使ALSP发病的具体机制尚不清楚。本文回顾CSF1R基因在ALSP发病过程中的突变位点及致病机制研究,发现CSF1R突变可以通过显性负性效应、功能丧失、单倍体剂量不足及功能获得等机制导致小胶质细胞功能异常,进而引起ALSP的发病。对ALSP病因的深入认识有助于更好地探索潜在的治疗方法。展开更多
The autotetraploid Carassius auratus(4nRR,4n=200,RRRR)is derived from whole-genome duplication of Carassius auratus red var.(RCC,2n=100,RR).In the current study,we demonstrated that chromatophores and pigment changes ...The autotetraploid Carassius auratus(4nRR,4n=200,RRRR)is derived from whole-genome duplication of Carassius auratus red var.(RCC,2n=100,RR).In the current study,we demonstrated that chromatophores and pigment changes directly caused the coloration and variation of 4nRR skin(red in RCC,brownish-yellow in4nRR).To further explore the molecular mechanisms underlying coloration formation and variation in 4nRR,we performed transcriptome profiling and molecular functional verification in RCC and 4nRR.Results revealed that scarb1,associated with carotenoid metabolism,underwent significant down-regulation in 4nRR.Efficient editing of this candidate pigment gene provided clear evidence of its significant role in RCC coloration.Subsequently,we identified four divergent scarb1 homeologs in 4nRR:two original scarb1 homeologs from RCC and two duplicated ones.Notably,three of these homeologs possessed two highly conserved alleles,exhibiting biased and allelespecific expression in the skin.Remarkably,after precise editing of both the original and duplicated scarb1homeologs and/or alleles,4nRR individuals,whether singly or multiply mutated,displayed a transition from brownishyellow skin to a cyan-gray phenotype.Concurrently,the proportional areas of the cyan-gray regions displayed a gene-dose correlation.These findings illustrate the subfunctionalization of duplicated scarb1,with all scarb1genes synergistically and equally contributing to the pigmentation of 4nRR.This is the first report concerning the functional differentiation of duplicated homeologs in an autopolyploidfish,substantiallyenrichingour understanding of coloration formation and change within this group of organisms.展开更多
BACKGROUND A significant subset of individuals with epilepsy fails to respond to currently available antiepileptic drugs,resulting in heightened mortality rates,psychosocial challenges,and a diminished quality of life...BACKGROUND A significant subset of individuals with epilepsy fails to respond to currently available antiepileptic drugs,resulting in heightened mortality rates,psychosocial challenges,and a diminished quality of life.Genetic factors,particularly within the SCN1A gene,and the pro-inflammatory cytokine response is important in intricating the drug resistance in idiopathic epilepsy cases.In this extended study,we determined the correlation of rs6732655A/T single nucleotide polymorphism to understand the causative association of SCN1A gene with epilepsy drug resistance and inflammatory response.AIM To find the correlation of SCN1A gene rs6732655A/T polymorphism with the drug-resistant epilepsy and inflammatory response.METHODS The study enrolled 100 age and sex-matched patients of both drug-resistant and drug-responsive epilepsy cases.We analysed the rs6732655A/T polymorphism to study its association and causative role in drug-resistant epilepsy cases using restriction fragment length polymorphism technique.The diagnostic performance of interleukin(IL)-1β,IL-6,and high mobility group box 1(HMGB1)protein levels was evaluated in conjunction with genotypic outcome receiver operating characteristic analysis.RESULTS AT and AA genotypes of rs6732655 SCN1A gene polymorphism were associated with higher risk of drug resistance epilepsy.Serum biomarkers IL-6,IL1βand HMGB1 demonstrated diagnostic potential,with cutoff values of 4.63 pg/mL,59.52 pg/mL and 7.99 ng/mL,respectively,offering valuable tools for epilepsy management.Moreover,specific genotypes(AA and AT)were found to be linked to the elevated levels of IL-1βand IL-6 and potentially reflecting increased oxidative stress and neuro-inflammation in drug-resistant cases supporting the previous reported outcome of high inflammatory markers response in drug resistance epilepsy.CONCLUSION SCN1A genotypes AA and AT are linked to higher drug-resistant epilepsy risk.These findings underscore the potential influence of inflammation and genetics on epilepsy treatment resistance.展开更多
文摘凡纳滨对虾的主要选育目标分为两个方面:一是培育具有较强抗病、抗逆性的“高抗系”(GK),二是培育具有快速生长特性的“快大系”(KD)。然而,国内缺少针对这两个选育群体的遗传多样性特别是基因组近交水平的调查分析研究。基于液相芯片“黄海芯1号”(55 K SNP)的基因分型数据,首次分析了GK(1064尾个体)和KD(564尾个体)选育群体的遗传结构和遗传多样性,调查了连续性纯合片段(ROH)的基因组分布特征,并重点评估了两个群体的基因组近交水平。PCA及进化树分析表明GK及KD群体可明确分层,亲缘关系热图表明KD群体内个体间的亲缘关系比GK群体更近。GK群体包括的家系数量更多,导致其遗传多样性高于KD群体;两群体间的F_(st)为0.09,存在中等遗传分化。GK和KD群体每个ROH的平均长度分别为(1.70±0.34)Mb和(1.65±0.38)Mb,每个样本ROH的平均数量分别为1.98±1.30和2.07±1.37。GK和KD群体0.8~1.25 Mb长度的ROH占比分别为11.41%和19.17%,表明KD群体的选育历史比GK群体更长。两个群体>2.25 Mb长度的ROH片段占比分别为10.26和9.74%,表明两个群体短期内未发生近亲交配。七种基因组近交系数评估结果表明,KD群体的近交水平高于GK群体。不依赖基础群体等位基因频率的F_(ROH)和F_(HOM)方法可准确地评价育种群体的真实近交水平,而F_(VR1)、F_(YA1)和F_(LH1)等依赖基础群体等位基因频率的方法可以用来比较群体及个体间的相对近交水平。上述结果为准确地评估育种群体的近交水平和优化育种方案提供了重要参考依据。
基金supported by the National Natural Science Foundation of China (32172972,U19A2040)Science and Technology Innovation Program of Hunan Province (2021RC4028)+4 种基金Earmarked Fund for China Agriculture Research System (CARS-45)Hunan Provincial Science and Technology Department (2019RS5001)Special Funds for Construction of Innovative Provinces in Hunan Province (2021NK1010)Special Science Found of Nansha-South China Agricultural University Fishery Research Institute,Guangzhou (NSYYKY202305,NSYYKY202306)Aid Program for Science and Technology Innovative Research Team in Higher Educational Institutions of Hunan Province。
文摘The autotetraploid Carassius auratus(4nRR,4n=200,RRRR)is derived from whole-genome duplication of Carassius auratus red var.(RCC,2n=100,RR).In the current study,we demonstrated that chromatophores and pigment changes directly caused the coloration and variation of 4nRR skin(red in RCC,brownish-yellow in4nRR).To further explore the molecular mechanisms underlying coloration formation and variation in 4nRR,we performed transcriptome profiling and molecular functional verification in RCC and 4nRR.Results revealed that scarb1,associated with carotenoid metabolism,underwent significant down-regulation in 4nRR.Efficient editing of this candidate pigment gene provided clear evidence of its significant role in RCC coloration.Subsequently,we identified four divergent scarb1 homeologs in 4nRR:two original scarb1 homeologs from RCC and two duplicated ones.Notably,three of these homeologs possessed two highly conserved alleles,exhibiting biased and allelespecific expression in the skin.Remarkably,after precise editing of both the original and duplicated scarb1homeologs and/or alleles,4nRR individuals,whether singly or multiply mutated,displayed a transition from brownishyellow skin to a cyan-gray phenotype.Concurrently,the proportional areas of the cyan-gray regions displayed a gene-dose correlation.These findings illustrate the subfunctionalization of duplicated scarb1,with all scarb1genes synergistically and equally contributing to the pigmentation of 4nRR.This is the first report concerning the functional differentiation of duplicated homeologs in an autopolyploidfish,substantiallyenrichingour understanding of coloration formation and change within this group of organisms.
文摘BACKGROUND A significant subset of individuals with epilepsy fails to respond to currently available antiepileptic drugs,resulting in heightened mortality rates,psychosocial challenges,and a diminished quality of life.Genetic factors,particularly within the SCN1A gene,and the pro-inflammatory cytokine response is important in intricating the drug resistance in idiopathic epilepsy cases.In this extended study,we determined the correlation of rs6732655A/T single nucleotide polymorphism to understand the causative association of SCN1A gene with epilepsy drug resistance and inflammatory response.AIM To find the correlation of SCN1A gene rs6732655A/T polymorphism with the drug-resistant epilepsy and inflammatory response.METHODS The study enrolled 100 age and sex-matched patients of both drug-resistant and drug-responsive epilepsy cases.We analysed the rs6732655A/T polymorphism to study its association and causative role in drug-resistant epilepsy cases using restriction fragment length polymorphism technique.The diagnostic performance of interleukin(IL)-1β,IL-6,and high mobility group box 1(HMGB1)protein levels was evaluated in conjunction with genotypic outcome receiver operating characteristic analysis.RESULTS AT and AA genotypes of rs6732655 SCN1A gene polymorphism were associated with higher risk of drug resistance epilepsy.Serum biomarkers IL-6,IL1βand HMGB1 demonstrated diagnostic potential,with cutoff values of 4.63 pg/mL,59.52 pg/mL and 7.99 ng/mL,respectively,offering valuable tools for epilepsy management.Moreover,specific genotypes(AA and AT)were found to be linked to the elevated levels of IL-1βand IL-6 and potentially reflecting increased oxidative stress and neuro-inflammation in drug-resistant cases supporting the previous reported outcome of high inflammatory markers response in drug resistance epilepsy.CONCLUSION SCN1A genotypes AA and AT are linked to higher drug-resistant epilepsy risk.These findings underscore the potential influence of inflammation and genetics on epilepsy treatment resistance.
