The Drake Passage is located between the Antarctic Peninsula and Tierra del Fuego in the south of South America.Surface seawater samples were collected at seven sites in the Drake Passage during the austral summer of ...The Drake Passage is located between the Antarctic Peninsula and Tierra del Fuego in the south of South America.Surface seawater samples were collected at seven sites in the Drake Passage during the austral summer of 2012.The 16 S rRNA sequences were analyzed from 187 isolated bacterial strains.Three phyla,29 genera and 56 species were identified.The three phyla were Actinobacteria,Firmicutes and Proteobacteria;the Proteobacteria included a-Proteobacteria,P-Proteobacteria and y-Proteobacteria.y-Proteobacteria,Actinobacteria and Firmicutes were the dominant class or phyla in terms of quantity and species.Gram-positive bacteria(Actinobacteria and Firmicutes) accounted for 57.8% of all types identified.There were nine dominant genera,including Curtobacterium,Staphylococcus,and Halomonas,and 14 dominant species including Curtobacterium flaccumfaciens,Curtobacterium pusillum,and Staphylococcus sciuri.Of the strains identified,87.2% were catalase positive or weakly positive.展开更多
Microbial diversity has been an important facet of scientific research, since microbes promise a plethora of biomolecules which are otherwise not found in nature. Microbes are subjected to high level of competition fo...Microbial diversity has been an important facet of scientific research, since microbes promise a plethora of biomolecules which are otherwise not found in nature. Microbes are subjected to high level of competition for survival in the environment, and hence develop mechanisms of defense. The biomolecules produced by these microbes as part of their defense or survival mechanism, are of importance for human and animal drugs and many other industrial and environmental applications. The marine counterparts of these terrestrial microbes have yet higher potential, since the marine environment has higher biotic and abiotic stresses, leading to new molecule discovery. In the current study, a bacterial diversity study of the culturable bacteria of the mangrove rhizosphere of Avicennia marina has been undertaken, to understand the flora diversity. Mangroves are unique ecosystems which are under a combination of marine and terrestrial influence. Mangroves are seaward, inland and also found in creek areas. This diversity in their habitat, leads them to produce variable root exudates, which support the growth of different types of organisms. This study has revealed that certain species are dominant in these ecosystems irrespective of the biotic and abiotic stresses, whereas certain species appear only at neutral pH. The study will help select organisms for further biomolecule discovery programs, based on their environment of isolation and other growth parameters.展开更多
Microbes inhabiting the desert respond sensitively to environmental changes and may be an indicator for changes in the desert ecosystem.Hypolithic microbial communities in the desert play a vital role in ecosystem pro...Microbes inhabiting the desert respond sensitively to environmental changes and may be an indicator for changes in the desert ecosystem.Hypolithic microbial communities in the desert play a vital role in ecosystem processes such as soil formation and organic matter accumulation.This study investigated and compared the culturable bacterial community structure and diversity in hypolithic and peripheral soils,and the interaction between bacteria and environmental factors.The bacteria were isolated using four different kinds of media and identified by 16S rRNA gene-sequence analysis.The numbers of culturable bacteria in the hypolithic and peripheral soils ranged from 3.0×104 to 3.6×105 CFU/g and from 6.5×104 to 5.3×105 CFU/g,respectively,indicating that the bacteria number in peripheral soil was higher than that in hypolithic soil.A total of 98 species belonging to 34 genera were identified,among which Arthrobacter,Bacillus,and Streptomyces were found dominantly and widely distributed.The community of culturable bacteria had obvious sample specificity,and the diversity in hypolithic soil was higher than that in peripheral soil.On the regional scale,the distribution of culturable bacteria and the environmental factors showed regular changes.On the local scale,the high heterogeneity of the hypolithic environment determined the specificity of the number and species of culturable bacteria.展开更多
[Objectives] To study the endophytic bacteria diversity in the root of Peperomia dindygulensis Miq. [Methods] The root of P.dindygulensis Miq. was taken as materials,culture-independent method was applied to build 16 ...[Objectives] To study the endophytic bacteria diversity in the root of Peperomia dindygulensis Miq. [Methods] The root of P.dindygulensis Miq. was taken as materials,culture-independent method was applied to build 16 S rDNA clone library for endophytic bacteria of P. dindygulensis Miq. [Results] In the 16 S rDNA clone library for endophytic bacteria of P. dindygulensis Miq.,95 clones separately belonged to 46 OTUs,Phylogenetic analysis indicated that these cloning sequences separately belonged to phylum Proteobacteria,phylum Bacteroidetes,phylum Actinobacteria,phylum Nitrospirae,and phylum Gemmatimonadetes. In these,phylum Proteobacteria accounted for 70. 53% of total number of clones,so it was the most dominant group in this library. [Conclusions]The endophytic bacteria diversity in the root of P.dindygulensis Miq. is rich and this study is expected to provide scientific basis for protection,development and use of resources of P. dindygulensis Miq.展开更多
Harnessing the rhizospheric microbiome,including phosphorus mineralizing bacteria(PMB),is a promising technique for maintaining sustainability and productivity in intensive agricultural systems.However,it is unclear a...Harnessing the rhizospheric microbiome,including phosphorus mineralizing bacteria(PMB),is a promising technique for maintaining sustainability and productivity in intensive agricultural systems.However,it is unclear as to which beneficial taxonomic group populations in the rhizosphere are potentially associated with the changes in soil microbiomes shifted by fertilization regimes.Herein,we analyzed the diversity and community structure of total bacteria and PMB in the rhizosphere of maize(Zea mays L.)grown in soils under 25 years of four fertilization regimes(compost,biocompost,chemical,or nonfertilized)via selective culture and Illumina sequencing of the 16S rRNA genes.Plant development explained more variations(29 and 13%,respectively)in the composition of total bacteria and PMB in the rhizosphere of maize than the different fertilization regimes.Among those genera enriched in the rhizosphere of maize,the relative abundances of Oceanobacillus,Bacillus,Achromobacter,Ensifer,Paracoccus,Ramlibacter,and Luteimonas were positively correlated with those in the bulk soil.The relative abundance of Paracoccus was significantly higher in soils fertilized by compost or biocompost than the other soils.Similar results were also observed for PMB affiliated with Ensifer,Bacillus,and Streptomyces.Although plant development was the major factor in shaping the rhizospheric microbiome of maize,fertilization regimes might have modified beneficial rhizospheric microbial taxa such as Bacillus and Ensifer.展开更多
Polyvinyl alcohol( PVA) is a water-soluble synthetic polymer that is hard to biodegrade. PVA-degrading microorganisms were previously reported as unitary bacteria and most of them have been identified as aerobes. In t...Polyvinyl alcohol( PVA) is a water-soluble synthetic polymer that is hard to biodegrade. PVA-degrading microorganisms were previously reported as unitary bacteria and most of them have been identified as aerobes. In this work,a microbial community was cultured anaerobically and its degradation performance and biodiversity were analyzed. The microbial community was cultured for more than 40 d,which represents a highly efficient degradation performance with a chemical oxygen demand removal efficiency of 88. 48%. Operational taxonomic unit-based analysis of the sequences revealed a highly diverse community in the reactor. To note,metagenome 16s rDNA sequencing delineated 19 phyla and 41 classes. Specifically, proteobacteria, chlamydiae, bacteroidetes,firmicutes,and planctomycetes play key roles in the biodegradation processes. Moreover,the betaproteobacteria class belonging to the proteobacteria phylum was the predominant bacterial members in this community. Our results demonstrated that anaerobic treatment of PVA wastewater is feasible and confers degradation by a highly diverse microbial community.展开更多
基金Supported by the Natural Science Foundation of China-United Fund(No.U1406402-5)the Postdoctoral Researcher Applied Research Project Funding of Qingdao,China(No.Q51201407)the International Cooperation and Exchanges in Science and Technology(No.2014DFG30890)
文摘The Drake Passage is located between the Antarctic Peninsula and Tierra del Fuego in the south of South America.Surface seawater samples were collected at seven sites in the Drake Passage during the austral summer of 2012.The 16 S rRNA sequences were analyzed from 187 isolated bacterial strains.Three phyla,29 genera and 56 species were identified.The three phyla were Actinobacteria,Firmicutes and Proteobacteria;the Proteobacteria included a-Proteobacteria,P-Proteobacteria and y-Proteobacteria.y-Proteobacteria,Actinobacteria and Firmicutes were the dominant class or phyla in terms of quantity and species.Gram-positive bacteria(Actinobacteria and Firmicutes) accounted for 57.8% of all types identified.There were nine dominant genera,including Curtobacterium,Staphylococcus,and Halomonas,and 14 dominant species including Curtobacterium flaccumfaciens,Curtobacterium pusillum,and Staphylococcus sciuri.Of the strains identified,87.2% were catalase positive or weakly positive.
文摘Microbial diversity has been an important facet of scientific research, since microbes promise a plethora of biomolecules which are otherwise not found in nature. Microbes are subjected to high level of competition for survival in the environment, and hence develop mechanisms of defense. The biomolecules produced by these microbes as part of their defense or survival mechanism, are of importance for human and animal drugs and many other industrial and environmental applications. The marine counterparts of these terrestrial microbes have yet higher potential, since the marine environment has higher biotic and abiotic stresses, leading to new molecule discovery. In the current study, a bacterial diversity study of the culturable bacteria of the mangrove rhizosphere of Avicennia marina has been undertaken, to understand the flora diversity. Mangroves are unique ecosystems which are under a combination of marine and terrestrial influence. Mangroves are seaward, inland and also found in creek areas. This diversity in their habitat, leads them to produce variable root exudates, which support the growth of different types of organisms. This study has revealed that certain species are dominant in these ecosystems irrespective of the biotic and abiotic stresses, whereas certain species appear only at neutral pH. The study will help select organisms for further biomolecule discovery programs, based on their environment of isolation and other growth parameters.
基金financially supported by the National Natural Science Foundation of China(31870479,31570498,and 41801045)the Key Foreign Cooperation Projects of the Bureau of International Cooperation of Chinese Academy of Sciences(131B62KYSB20160014)
文摘Microbes inhabiting the desert respond sensitively to environmental changes and may be an indicator for changes in the desert ecosystem.Hypolithic microbial communities in the desert play a vital role in ecosystem processes such as soil formation and organic matter accumulation.This study investigated and compared the culturable bacterial community structure and diversity in hypolithic and peripheral soils,and the interaction between bacteria and environmental factors.The bacteria were isolated using four different kinds of media and identified by 16S rRNA gene-sequence analysis.The numbers of culturable bacteria in the hypolithic and peripheral soils ranged from 3.0×104 to 3.6×105 CFU/g and from 6.5×104 to 5.3×105 CFU/g,respectively,indicating that the bacteria number in peripheral soil was higher than that in hypolithic soil.A total of 98 species belonging to 34 genera were identified,among which Arthrobacter,Bacillus,and Streptomyces were found dominantly and widely distributed.The community of culturable bacteria had obvious sample specificity,and the diversity in hypolithic soil was higher than that in peripheral soil.On the regional scale,the distribution of culturable bacteria and the environmental factors showed regular changes.On the local scale,the high heterogeneity of the hypolithic environment determined the specificity of the number and species of culturable bacteria.
基金Supported by Scientific Research Foundation of Yunnan Provincial Department of Education(2015Y393)Scientific Research Project of Kunming University(XJZD1605)+1 种基金Construction Project of Key Superior and Characteristic Disciplines(Ecology)in Colleges and Universities of Yunnan Province(05000511311)Project of Key Laboratory of Special Biological Resource Development and Utilization of Universities in Yunnan Province(GXKJ201622)
文摘[Objectives] To study the endophytic bacteria diversity in the root of Peperomia dindygulensis Miq. [Methods] The root of P.dindygulensis Miq. was taken as materials,culture-independent method was applied to build 16 S rDNA clone library for endophytic bacteria of P. dindygulensis Miq. [Results] In the 16 S rDNA clone library for endophytic bacteria of P. dindygulensis Miq.,95 clones separately belonged to 46 OTUs,Phylogenetic analysis indicated that these cloning sequences separately belonged to phylum Proteobacteria,phylum Bacteroidetes,phylum Actinobacteria,phylum Nitrospirae,and phylum Gemmatimonadetes. In these,phylum Proteobacteria accounted for 70. 53% of total number of clones,so it was the most dominant group in this library. [Conclusions]The endophytic bacteria diversity in the root of P.dindygulensis Miq. is rich and this study is expected to provide scientific basis for protection,development and use of resources of P. dindygulensis Miq.
基金supported by the National Key R&D Program of China(2019YFD1002000,2016YFD0800602 and 2016YFD0501404)。
文摘Harnessing the rhizospheric microbiome,including phosphorus mineralizing bacteria(PMB),is a promising technique for maintaining sustainability and productivity in intensive agricultural systems.However,it is unclear as to which beneficial taxonomic group populations in the rhizosphere are potentially associated with the changes in soil microbiomes shifted by fertilization regimes.Herein,we analyzed the diversity and community structure of total bacteria and PMB in the rhizosphere of maize(Zea mays L.)grown in soils under 25 years of four fertilization regimes(compost,biocompost,chemical,or nonfertilized)via selective culture and Illumina sequencing of the 16S rRNA genes.Plant development explained more variations(29 and 13%,respectively)in the composition of total bacteria and PMB in the rhizosphere of maize than the different fertilization regimes.Among those genera enriched in the rhizosphere of maize,the relative abundances of Oceanobacillus,Bacillus,Achromobacter,Ensifer,Paracoccus,Ramlibacter,and Luteimonas were positively correlated with those in the bulk soil.The relative abundance of Paracoccus was significantly higher in soils fertilized by compost or biocompost than the other soils.Similar results were also observed for PMB affiliated with Ensifer,Bacillus,and Streptomyces.Although plant development was the major factor in shaping the rhizospheric microbiome of maize,fertilization regimes might have modified beneficial rhizospheric microbial taxa such as Bacillus and Ensifer.
基金Science and Technology Plan of Henan Province,China(No.132300410080)North China University of Water Resources and Electric Power Postgraduate Education Innovation Program,China(No.YK2015-13)
文摘Polyvinyl alcohol( PVA) is a water-soluble synthetic polymer that is hard to biodegrade. PVA-degrading microorganisms were previously reported as unitary bacteria and most of them have been identified as aerobes. In this work,a microbial community was cultured anaerobically and its degradation performance and biodiversity were analyzed. The microbial community was cultured for more than 40 d,which represents a highly efficient degradation performance with a chemical oxygen demand removal efficiency of 88. 48%. Operational taxonomic unit-based analysis of the sequences revealed a highly diverse community in the reactor. To note,metagenome 16s rDNA sequencing delineated 19 phyla and 41 classes. Specifically, proteobacteria, chlamydiae, bacteroidetes,firmicutes,and planctomycetes play key roles in the biodegradation processes. Moreover,the betaproteobacteria class belonging to the proteobacteria phylum was the predominant bacterial members in this community. Our results demonstrated that anaerobic treatment of PVA wastewater is feasible and confers degradation by a highly diverse microbial community.
