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松材线虫耐药基因克隆及其功能 被引量:3
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作者 郝昕 王峰 +2 位作者 马玲 王博文 马岩 《东北林业大学学报》 CAS CSCD 北大核心 2018年第9期89-92,97,共5页
为探究松材线虫(Bursaphelenchus xylophilus)耐药的分子机理,对松材线虫耐药基因Bx-mrp1进行鉴定并对其蛋白结构及功能进行了研究。在松材线虫基因组数据中得到松材线虫与秀丽线虫(Caenorhabditis elegans) mrp1具有同源性的基因,命名... 为探究松材线虫(Bursaphelenchus xylophilus)耐药的分子机理,对松材线虫耐药基因Bx-mrp1进行鉴定并对其蛋白结构及功能进行了研究。在松材线虫基因组数据中得到松材线虫与秀丽线虫(Caenorhabditis elegans) mrp1具有同源性的基因,命名为Bx-mrp1,并比较了松材线虫Bx-mrp1与相近线虫属之间的mrp基因差异。对松材线虫Bx-mrp1完整蛋白编码区(CDS)进行PCR扩增后,运用RNAi技术对该基因进行基因沉默,分析沉默该基因后对松材线虫死亡率的影响。通过PyM OL软件对Bx-MRP1蛋白质进行三维结构预测。结果表明:在NCBI中,通过BLAST比对,Bx-mrp1与秀丽线虫mrp1同源性为43%。Bx-MRP1蛋白质包含32个α螺旋和18个β折叠,以及含有3个TMD和2个NBD结构,具有多个跨膜结构域,表明Bx-mrp1具有跨膜运输的功能。通过PCR得到松材线虫Bx-mrp1基因CDS区全长为4 659 bp。在对Bx-mrp1基因沉默后,发现RNAi处理组的松材线虫在同质量浓度的苦参碱药剂胁迫下的死亡率有所增加,在多药耐药生理过程中起正向调控作用。 展开更多
关键词 松材线虫 基因沉默 bx-mrp1
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Bioinformatics analysis of structure and function in the MRP gene family and its expression in response to various drugs in Bursaphelenchus xylophilus 被引量:2
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作者 Jian Diao Xin Hao +1 位作者 Wei Ma Ling Ma 《Journal of Forestry Research》 SCIE CAS CSCD 2021年第2期779-787,共9页
Genes homologous to members of the MRP gene family in Caenorhabditis elegans are important in drug resistance.To further explore the molecular mechanism of drug resistance in pine wood nematode(Bursaphelenchus xylophi... Genes homologous to members of the MRP gene family in Caenorhabditis elegans are important in drug resistance.To further explore the molecular mechanism of drug resistance in pine wood nematode(Bursaphelenchus xylophilus),we used bioinformatics approaches to analyze genomic data for B.xylophilus and identified Bx-MRP genes.We predicted the structure and function of the genes and encoded proteins.Using bioinformatics programs to predict and analyze various properties of the predicted proteins,including hydrophobicity,transmembrane regions,phosphorylation sites,and topologically isomeric structures,of these Bx-MRP genes,we determined that they function in transmembrane transport.From the results of RT-qPCR,the Bx-MRP family members confer significant differential resistance to different drug treatments.After treatment with different concentrations of emamectin benzoate,avermectin and matrine,the expression of each gene increased with increasing drug concentrations,indicating that the family members play a positive role in the regulation of multidrug resistance. 展开更多
关键词 Bursaphelenchus xylophilus bx-mrp gene family Gene and protein structure BIOINFORMATICS Multidrug stress
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