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Extensive evolution analysis of the global chikungunya virus strains revealed the origination of CHIKV epidemics in Pakistan in 2016 被引量:2
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作者 Junming Shi Zhengyuan Su +8 位作者 Zhaojun Fan Jun Wang Siqing Liu Bo Zhang Hongping Wei Shoukat Jehan Nadia Jamil Shu Shen Fei Deng 《Virologica Sinica》 SCIE CAS CSCD 2017年第6期520-532,共13页
Chikungunya virus(CHIKV) is a mosquito-borne virus that causes epidemics widely in the world especially in the tropical and subtropical regions. Phylogenetic analysis has found that the CHIKV lineages were associated ... Chikungunya virus(CHIKV) is a mosquito-borne virus that causes epidemics widely in the world especially in the tropical and subtropical regions. Phylogenetic analysis has found that the CHIKV lineages were associated with the spatial and temporal distributions, which were related to the virus adaption to the major mosquito species and their distributions. In this study, we reported the complete genome sequences of eight CHIKV isolates from the outbreak in Pakistan last year. Then we reviewed the evolutionary history using extensive phylogenetic analysis, analyzed lineagespecific substitutions in viral proteins, and characterized the spreading pathway of CHIKV strains including the Pakistani strains. The results showed that the Pakistani stains belonged to the ECSA.IOL sub-lineage and derived from India. The genetic properties of the Pakistani strains including the adaptive substitution to vectors were further characterized, and the potential risks from the occurrence of CHIKV infection in Pakistan were discussed. These results provided better understanding of CHIKV evolution and transmission in the world and revealed the possible origination of the CHIKV outbreak and epidemic in Pakistan, which would promote the disease prevention and control in the identified countries and territories with the history of CHIKV infections as well as new regions with potential risk of CHIKV outbreaks. 展开更多
关键词 chikungunya virus(chikv) Pakistan phylogenetic analysis
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Development of a Specific CHIKV-E2 Monoclonal Antibody for Chikungunya Diagnosis 被引量:1
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作者 Jaemoo Kim Jihyun Yang +3 位作者 Young Bong Kim Hee-Jung Lee Sehyun Kim Haryoung Poo 《Virologica Sinica》 SCIE CAS CSCD 2019年第5期563-571,共9页
Chikungunya fever is a vector-borne viral disease transmitted to humans by chikungunya virus(CHIKV)-infected mosquitoes.There have been many outbreaks of CHIKV infection worldwide,and the virus poses ongoing risks to ... Chikungunya fever is a vector-borne viral disease transmitted to humans by chikungunya virus(CHIKV)-infected mosquitoes.There have been many outbreaks of CHIKV infection worldwide,and the virus poses ongoing risks to global health.To prevent and control CHIKV infection,it is important to improve the current CHIKV diagnostic approaches to allow for the detection of low CHIKV concentrations and to correctly distinguish CHIKV infections from those due to other mosquito-transmitted viruses,including dengue virus(DENV),Japanese encephalitis virus(JEV),and Zika virus(ZIKV).Here,we produced monoclonal antibodies(mAbs)against the CHIKV envelope 2 protein(CHIKV-E2)and compared their sensitivity and specificity with commercially available mAbs using enzyme-linked immunosorbent assays(ELISA).Two anti-CHIKV-E2 mAbs,19-1 and 21-1,showed higher binding affinities to CHIKV-E2 protein than the commercial mAbs did.In particular,the 19-1 mAb had the strongest binding affinity to inactivated CHIKV.Moreover,the 19-1 mAb had very little cross-reactivity with other mosquito-borne viruses,such as ZIKV,JEV,and DENV.These results suggest that the newly produced anti-CHIKV-E2 mAb,19-1,could he used for CHIKV diagnostic approaches. 展开更多
关键词 Chikungunya virus(chikv) Envelope 2 Monoclonal antibody Diagnosis• Sensitivity SPECIFICITY
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CHIKV Real-time PCR检测方法的建立及试剂盒研发 被引量:5
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作者 郑丽兰 冯海欢 +5 位作者 陈鑫华 张驰 邓茗芝 王晓萌 杨淑君 彭鸿娟 《中国热带医学》 CAS 2018年第4期345-350,共6页
目的建立快速特异检测基孔肯雅病毒的Real-time PCR方法及试剂盒。方法根据发表在Genbank上15株基孔肯雅病毒基因序列全长,应用Clustal W2.0和DNAMAN8软件筛选出位于其E1基因上的种内保守种间特异的目的片段,并据此设计出最优引物。人... 目的建立快速特异检测基孔肯雅病毒的Real-time PCR方法及试剂盒。方法根据发表在Genbank上15株基孔肯雅病毒基因序列全长,应用Clustal W2.0和DNAMAN8软件筛选出位于其E1基因上的种内保守种间特异的目的片段,并据此设计出最优引物。人工合成该基因片段并构建重组质粒,对重组质粒梯度稀释后,再利用SYBR GreenI Real-time PCR的方法检测该特异基因的浓度,建立标准品曲线,用于临床上基孔肯雅病毒的早期诊断。结果琼脂糖凝胶电泳结果显示,标准品的PCR扩增产物的电泳条带长度与目标条带一致,测序结果显示与目标条带序列一致,说明引物与阳性质粒性能良好。经优化确定CHIKV荧光定量PCR反应体系中最佳的引物浓度为350 nmol/L,最佳的反应条件为:50℃2 min;95℃预变性2 min;以95℃15 s,60℃15 s,72℃1 min进行40个循环扩增,在72℃进行荧光采集。根据荧光定量PCR熔解曲线出现特异性单峰,并对黄病毒属成员登革病毒和寨卡病毒的检测为阴性,表明该检测方法特异性高;检测阈值达302拷贝,显示敏感性好,重复试验的变异系数均小于0.1%,说明该实验设计稳定性良好。结论基于该方法的试剂盒具有特异性好、灵敏度高、重复性好、能够快速定量等优点,有利于临床上基孔肯雅病毒的早期诊断,具有良好的应用前景。 展开更多
关键词 基孔肯雅病毒 荧光定量PCR 检测试剂盒
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基孔肯雅病毒包膜蛋白E2的全基因合成及原核表达 被引量:3
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作者 章萍萍 潘卫 +7 位作者 曹洁 陈秋莉 王锦红 张华群 葛宜兵 祁培培 刘超 邓松华 《安徽医科大学学报》 CAS 北大核心 2012年第6期617-622,共6页
目的通过对全长基孔肯雅病毒包膜蛋白E2(CHIKV-E2,1~404 aa)及其跨膜疏水区(351~378 aa)缺失突变体E2(1~350 aa)进行原核表达,分析跨膜疏水区对E2蛋白在大肠杆菌中表达的影响。方法利用ExPasy预测软件对E2蛋白跨膜疏水区进行预测分析... 目的通过对全长基孔肯雅病毒包膜蛋白E2(CHIKV-E2,1~404 aa)及其跨膜疏水区(351~378 aa)缺失突变体E2(1~350 aa)进行原核表达,分析跨膜疏水区对E2蛋白在大肠杆菌中表达的影响。方法利用ExPasy预测软件对E2蛋白跨膜疏水区进行预测分析,根据GenBank数据库中CHIKV-E2氨基酸序列获得其对应的基因序列。结合重叠延伸PCR(OE-PCR)原理设计用于全基因合成的核酸引物对CHIKV-E2全长基因(404 aa)进行体外合成,构建全长E2蛋白及其缺失突变体原核表达质粒,将序列正确的两种重组质粒分别转至E.coli BL21(DE3),经IPTG诱导表达,SDS-PAGE检测重组质粒的表达情况。结果 OE-PCR法成功合成了大小为1 212 bp的编码CHIKV-E2(1~404 aa)蛋白的全长基因,构建了全长E2蛋白及其缺失突变体重组表达质粒pET21b-E2(1~404)和pET21b-E2(1~350),经IPTG诱导表达后,SDS-PAGE结果显示缺失突变体pET21b-E2(1~350)融合蛋白表达量较pET21b-E2(1~404)有明显提高。结论 E2蛋白跨膜疏水区(351~378 aa)对该蛋白的原核表达具有重要影响,缺失该疏水区的突变体在大肠杆菌中表达量比全长E2蛋白表达量明显提高。 展开更多
关键词 chikv-E2 跨膜疏水性蛋白 全基因合成 缺失突变体 原核表达
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Determination of Chikungunya Virus RNA by Reverse Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) Assay
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作者 Barnali Sen Sabrina Afrin +2 位作者 Sharmin Zahan Saif Ullah Munshi Sifat Uz Zaman 《Advances in Microbiology》 CAS 2022年第7期398-414,共17页
As a matter of fact, infectious diseases hamper everyone’s life and produce a lifelong threat to everyone neutral of age, sex, lifestyle and socio-economic status. Nowadays, come into the sight of Chikungunya viral (... As a matter of fact, infectious diseases hamper everyone’s life and produce a lifelong threat to everyone neutral of age, sex, lifestyle and socio-economic status. Nowadays, come into the sight of Chikungunya viral (CHIKV) infection injured many Asian and African countries, also deliberated threat in rising countries and also low socio-economic countries. CHIKV is a positive-sense, enveloped single-stranded, RNA virus belonging to the genus Alphavirus, family Togaviridae. As the Dengue & Chikungunya viruses are spread simultaneously at the same time, so it is tough to identify them. In our resource-limited countries, swift detection of CHIKV by RT-LAMP is the simplest molecular technique in low-equipment settings without the use of any expensive decoration. Heat-treated centrifuged and uncentrifuged samples were used in this study and they showed the same result (100%). Different instruments like heat block, water bath, conventional thermal cycler & real-time thermal cycler were used to amplify the CHIKV RNA and they indicated that 100% samples were identified by all four instruments. The amplified products were visualized by turbidity test, color change by HNB, step-ladder band pattern in agarose gel electrophoresis and amplification curve in real-time thermal cycler naked eye, here the results also showed 100% samples were determined by all visualized methods. Reverse transcription loop-mediated isothermal amplification (RT-LAMP) is a recent technique for amplifying RNA under limited temperature, with high tangibility, quickness and competency. To identify the CHIKV RNA Reverse transcription loop-mediated isothermal amplification was fabricated and validated, and the results were also compared with reverse transcription polymerase chain reaction (RT-PCR). The sensitivity was 95.71% and specificity was 100%, these results indicate that RT-LAMP is a feasible method for quick detection of CHIKV RNA. 展开更多
关键词 chikv Chikungynea RT-LAMP Infectious Diseases Viral Infection chikv-RNA
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Chikungunya virus,epidemiology,clinics and phylogenesis:A review 被引量:8
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作者 Alessandra Lo Presti Alessia Lai +2 位作者 Eleonora Cella Gianguglielmo Zehender Massimo Ciccozzi 《Asian Pacific Journal of Tropical Medicine》 SCIE CAS 2014年第12期925-932,共8页
Chikungunva virus is a mosquito-transmitted alphavirus that causes chikungunva fever,a febrile illness associated with severe arthralgia and rash.Chikungunva virus is transmitted by culicine mosquitoes:Chikungunya vir... Chikungunva virus is a mosquito-transmitted alphavirus that causes chikungunva fever,a febrile illness associated with severe arthralgia and rash.Chikungunva virus is transmitted by culicine mosquitoes:Chikungunya virus replicates in the skin,disseminates to liver,muscle,joints.lymphoid tissue and brain,presumably through the blood.Phylogenetic studies showed that the Indian Ocean and the Indian subcontinent epidemics were caused by two different introductions of distinct strains of East/Central/South African genotype of CHIKV.The paraphyletic grouping of African CHIK viruses supports the historical evidence that the virus was introduced into Asia from Africa.Phylogenetic analysis divided Chikungunva virus isolates into three distinct genotypes based on geographical origins:the first,the West Africa genotype,consisted of isolates from Senegal and Nigeria;the second contained strains from East/Central/South African genotype,while the third contained solely Asian.The most recent common ancestor for the recent epidemic,which ravaged Indian Ocean islands and Indian subcontinent in 2004- 2007.was found to date in 2002.Asian lineage dated about 1952 and exhibits similar spread patterns of the recent Indian Ocean outbreak lineage,with successive epidemics detected along an eastward path.Asian group splitted into two clades:an Indian lineage and a south east lineage.Outbreaks of Chikungunya virus fever in Asia have not been associated necessarily with outbreaks in Africa.Phylogenetic tools can reconstruct geographic spread of Chikungunva virus during the epidemics wave.The good management of patients with acute Chikungunva virus infection is essential for public health in susceptible areas with current Aedes spp activity. 展开更多
关键词 chikv EPIDEMIOLOGY PHYLOGENY
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云南省1株基孔肯雅毒株全基因组序列测定及特征分析
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作者 陈瑶瑶 赵晓南 +2 位作者 孙艳红 张美玲 周洁楠 《中国人兽共患病学报》 CAS CSCD 北大核心 2021年第3期221-224,229,共5页
目的对1例缅甸输入基孔肯雅热病例血清标本进行病毒分离及全基因组测序,分析其基因特征。方法采用real-time RT-PCR方法对标本进行检测,分离培养后获得毒株,对病毒核酸扩增后的产物进行全基因组测序,使用DNAStar 7.1软件对测序结果进行... 目的对1例缅甸输入基孔肯雅热病例血清标本进行病毒分离及全基因组测序,分析其基因特征。方法采用real-time RT-PCR方法对标本进行检测,分离培养后获得毒株,对病毒核酸扩增后的产物进行全基因组测序,使用DNAStar 7.1软件对测序结果进行拼接,Mega5.0软件对序列进行比对和系统发生树构建。结果病例血清标本核酸检测显示CHIKV阳性,经分离培养获得CHIKV毒株(YN0627株),全基因组测序得到其序列,YN0627全长为11586 nt,其基因结构符合CHIKV的基因特征。系统进化分析显示,YN0627与东中南非洲遗传谱系(East,Central and South African Lineage,ECSA)的其他流行株聚集在一起,属于ECSA谱系。YN0627的编码区与参考序列相比,核苷酸同源性为85.24%~99.96%,氨基酸同源性为95.34%~99.97%,结构蛋白编码区域有28个氨基酸变异位点。结论云南省输入性CHIKV-YN0627属于ECSA谱系,且观察到多个氨基酸位点突变,提示云南省应当加强对CHIKV的监测和研究。 展开更多
关键词 基孔肯雅病毒(chikv) 病毒分离 全基因组测序 序列分析
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Epidemiological trends of mosquito-borne viral diseases in Pakistan
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作者 Muhammad Imran Jing Ye +4 位作者 Muhammad K.Saleemi Iqra Shaheen Ali Zohaib Zheng Chen Shengbo Cao 《Animal Diseases》 2022年第2期127-136,共10页
Globally,arboviruses are public health problems.Pakistan has seen a fast-paced increase in mosquito-borne Flavivirus diseases such as dengue because of deforestation,climate change,urbanization,poor sanitation and nat... Globally,arboviruses are public health problems.Pakistan has seen a fast-paced increase in mosquito-borne Flavivirus diseases such as dengue because of deforestation,climate change,urbanization,poor sanitation and natural disasters.The magnitude and distribution of these diseases are poorly understood due to the lack of a competitive nationwide surveillance system.In dengue-endemic countries,the recent epidemics of chikungunya(CHIKV)and human West Nile virus(WNV)have created panic among the public and are thought to provoke an outbreak of Zika virus(ZIKV)in Pakistan.Recently,hospital-based surveillance has indicated the presence of Japanese encephalitis virus(JEV),which is deeply concerned by developing countries such as Pakistan.The situation could become more devastating because of poorly developed diagnostic infrastructure.To date,no licensed vaccine has been used in Pakistan,and preventive measures are mainly based on vector control.This review provides comprehensive information concerning the association of risk factors with disease occurrence,epidemiological trends,and prediction of the spread of mosquito-borne diseases,attention to new threats of ZIKV,and future perspectives by benchmarking global health policies. 展开更多
关键词 ARBOVIRUSES DENGUE chikv JEV WNV ZIKA Public health
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Elucidating cellular interactome of chikungunya virus identifies host dependency factors
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作者 Peiqi Yin Xia Jian +4 位作者 Yihan Liu Yuwen Liu Lu Lv Haoran Cui Leiliang Zhang 《Virologica Sinica》 SCIE CAS CSCD 2023年第4期497-507,共11页
Chikungunya virus(CHIKV)is a re-emerging mosquito-transmitted RNA virus causing joint and muscle pain.To better understand how CHIKV rewires the host cell and usurps host cell functions,we generated a systematic CHIKV... Chikungunya virus(CHIKV)is a re-emerging mosquito-transmitted RNA virus causing joint and muscle pain.To better understand how CHIKV rewires the host cell and usurps host cell functions,we generated a systematic CHIKV-human protein-protein interaction map and revealed several novel connections that will inform further mechanistic studies.One of these novel interactions,between the viral protein E1 and STIP1 homology and U-box containing protein 1(STUB1),was found to mediate ubiquitination of E1 and degrade E1 through the proteasome.Capsid associated with G3BP1,G3BP2 and AAAþATPase valosin-containing protein(VCP).Furthermore,VCP inhibitors blocked CHIKV infection,suggesting VCP could serve as a therapeutic target.Further work is required to fully understand the functional consequences of these interactions.Given that CHIKV proteins are conserved across alphaviruses,many virus-host protein-protein interactions identified in this study might also exist in other alphaviruses.Construction of interactome of CHIKV provides the basis for further studying the function of alphavirus biology. 展开更多
关键词 Chikungunya virus(chikv) INTERACTOME STIP1 homology and U-box containing protein 1(STUB1) Valosin-containing protein(VCP) CAPSID
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寨卡病毒、登革病毒、基孔肯雅病毒三重荧光定量RT-PCR检测方法的建立及评价 被引量:12
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作者 龚雪蕊 李阿茜 +5 位作者 刘洋 李川 张全福 李德新 梁米芳 王世文 《病毒学报》 CAS CSCD 北大核心 2018年第1期52-58,共7页
本研究旨在建立寨卡病毒(ZIKV virus,ZIKV)、登革病毒(Dengue virus,DENV)以及基孔肯雅病毒(Chikungunya virus,CHIKV)三种病毒快速筛查、诊断的核酸检测技术。选用ZIKV的NS1基因、DENV的NS5蛋白基因以及CHIKV的E1蛋白基因作为靶... 本研究旨在建立寨卡病毒(ZIKV virus,ZIKV)、登革病毒(Dengue virus,DENV)以及基孔肯雅病毒(Chikungunya virus,CHIKV)三种病毒快速筛查、诊断的核酸检测技术。选用ZIKV的NS1基因、DENV的NS5蛋白基因以及CHIKV的E1蛋白基因作为靶标区域设计三组特异性引物探针,建立三重实时荧光定量RT-PCR检测方法。用ZIKV、DENV、CHIKV病毒体外转录RNA和病毒细胞培养物对该方法的灵敏性、特异性、重复性等方面进行评价,最后临床样本以及模拟标本验证。结果显示:三重实时荧光定量RT-PCR检测方法扩增效率均可达到90%以上,三种病毒体外转录RNA最低检测限均低于15拷贝/PCR,病毒培养物最低检出限均低于10PFU/mL且与单重检测方法无明显差异。与其他病毒无交叉反应,变异系数均在2%以内。临床标本及模拟标本检出率均可达95%以上。本研究建立的检测寨卡病毒、登革病毒以及基孔肯雅病毒的三重实时荧光RT-PCR方法具有良好的敏感性、特异性和重复性,可用于寨卡病毒病等相关临床标本的检测。 展开更多
关键词 三重实时荧光定量RT-PCR 寨卡病毒(ZIKV) 登革病毒(DENV) 基孔肯雅病毒(chikv)
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福建省首株基孔肯雅病毒株的分离、鉴定及全基因特征分析 被引量:2
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作者 俞婷婷 林琦 +3 位作者 阚乃鹏 游丽斌 翁育伟 王金章 《病毒学报》 CAS CSCD 北大核心 2022年第6期1339-1345,共7页
为获得基孔肯雅病毒(Chikungunya virus,CHIKV)毒株并了解其分子生物学特征,本研究通过将2018年6月从菲律宾输入的基孔肯雅热(Chikungunya fever,CHIKF)病例发病1d的血清标本接种C6/36细胞进行病毒分离,并成功分离到福建省首株CHIKV毒株... 为获得基孔肯雅病毒(Chikungunya virus,CHIKV)毒株并了解其分子生物学特征,本研究通过将2018年6月从菲律宾输入的基孔肯雅热(Chikungunya fever,CHIKF)病例发病1d的血清标本接种C6/36细胞进行病毒分离,并成功分离到福建省首株CHIKV毒株FJCHIKV1801。利用高通量测序方法对该毒株进行测序,成功获得完整的基因序列,全长12139 bp。通过E1、E2结构蛋白重要氨基酸位点分析发现所获毒株E1蛋白氨基酸出现了可能增强埃及伊蚊的适应性突变K211E。最大似然法系统进化树分析结果显示毒株FJCHIKV1801的基因型属于亚洲基因型;其进化关系与2014年菲律宾分离的毒株Philippines 2014(MF773563)最为接近,提示毒株可能来源于菲律宾,这与该毒株源病例来源于菲律宾的流行病学调查结果相一致。本研究所建立的CHIKV病毒分离、基因测序和分析的方法可用于追溯可能的传染来源及监测病毒氨基酸变异情况,为CHIKF突发疫情处置提供技术支持。 展开更多
关键词 基孔肯雅病毒(chikv) 病毒分离 全基因序列 系统进化树
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含基孔肯雅病毒包膜蛋白VSV假病毒制备 被引量:1
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作者 尹兴鑫 辛永勤 +2 位作者 宋庆利 于航 李永刚 《中国公共卫生》 CAS CSCD 北大核心 2015年第12期1616-1618,共3页
目的建立一种含有基孔肯雅病毒(CHIKV)包膜蛋白的便于流行病学调查的疱疹性口炎病毒(VSV)假病毒。方法以缺失VSV G蛋白的VSV病毒做为载体,制备含有CHIKV膜蛋白的VSV-E2E1病毒。结果该VSV假病毒带有CHIKV膜蛋白,同时带有绿色荧光蛋白(GFP... 目的建立一种含有基孔肯雅病毒(CHIKV)包膜蛋白的便于流行病学调查的疱疹性口炎病毒(VSV)假病毒。方法以缺失VSV G蛋白的VSV病毒做为载体,制备含有CHIKV膜蛋白的VSV-E2E1病毒。结果该VSV假病毒带有CHIKV膜蛋白,同时带有绿色荧光蛋白(GFP)或荧光素酶;功效性试验显示,VSV-E2E1病毒在CHIKV E2单克隆抗体1:2 000稀释度时,酶的活性为2.73%,1:4 000稀释度时酶活性为9.61%,1:8 000稀释度时酶活性为19.76%,1:16 000稀释度时酶活性为29.23%,1:32 000稀释度时酶活性为41.68%,1:64 000稀释度时酶活性为74.84%;无病毒感染的阴性对照酶活性为2.46%,当抗体稀释度为1:2 000时,最大限度地抑制了病毒的复制。结论含有基孔肯雅病毒包膜蛋白VSV假病毒安全、可靠,可应用于流行病学调查分析。 展开更多
关键词 基孔肯雅病毒(chikv) 假病毒 包膜蛋白 中和试验
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利用宏基因组纳米孔测序方法检测模拟临床样本中的基孔肯雅病毒和辛德毕斯病毒 被引量:3
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作者 王佶 张瑞卿 +4 位作者 孙振璐 任浩 陈操 董小平 马学军 《病毒学报》 CAS CSCD 北大核心 2020年第3期377-384,共8页
基于二代测序的宏基因组测序方法(m-NGS)在理论上可以无偏性地检测样品中的所有生物,在感染性疾病的分子诊断领域彰显了突出的作用。但其实验流程复杂,需要操作者具备足够的知识和经验才能获得准确而丰富的诊断信息。因此,需要建立更简... 基于二代测序的宏基因组测序方法(m-NGS)在理论上可以无偏性地检测样品中的所有生物,在感染性疾病的分子诊断领域彰显了突出的作用。但其实验流程复杂,需要操作者具备足够的知识和经验才能获得准确而丰富的诊断信息。因此,需要建立更简单,更快速而且更低成本的宏基因组测序方法,以满足公共卫生实验室的需求。本研究基于MinION建立了宏基因组纳米孔测序(m-NanoS)方法,并成功用于基孔肯雅病毒(CHIKV)和辛德毕斯病毒(SINV)模拟临床样本的检测。将CHIKV和SINV培养物与发热病人咽拭子混合,灭活后提取核酸用于构建m-NanoS文库。MinION共产生了25147条reads,平均质量得分为10.20,平均读长为1334 bp。来自CHIKV和SINV的reads分别有47条和1371条,占总数据量的0.19%和5.45%。CHIKV和SINV的基因组覆盖度分别为99.45%和99.34%,经过拼接获得一致性序列,与参考序列比对的一致性分别为95%和90%。在公共卫生领域,快速地对样本中潜在的全部病原体进行准确鉴定是一个重要又困难的工作,而m-NanoS方法的成功建立无疑为该工作提供了一个有力的诊断工具。 展开更多
关键词 纳米孔测序 宏基因组测序 RNA病毒检测 基孔肯雅病毒 辛德毕斯病毒
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基孔肯雅病毒LAMP检测方法的建立及其应用研究 被引量:5
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作者 李小波 鲁曦 +4 位作者 幸芦琴 郑夔 单潇潇 黄吉城 石磊 《中国卫生检验杂志》 CAS 北大核心 2012年第3期506-508,共3页
目的:建立快速、灵敏、特异的基孔肯雅病毒(CHIKV)环介导等温基因扩增(LAMP)检测方法,将该方法应用于基孔肯雅热(CHIK)可疑患者的快速筛查。方法:根据CHIKV核酸序列多重比对结果设计并合成LAMP专用的扩增引物,摸索最佳反应条件,建立灵... 目的:建立快速、灵敏、特异的基孔肯雅病毒(CHIKV)环介导等温基因扩增(LAMP)检测方法,将该方法应用于基孔肯雅热(CHIK)可疑患者的快速筛查。方法:根据CHIKV核酸序列多重比对结果设计并合成LAMP专用的扩增引物,摸索最佳反应条件,建立灵敏、特异的CHIKV核酸LAMP检测新方法;应用该方法对疑似患者血清中提取的核酸进行快速检测。结果:本方法对CHIKV样本的检测灵敏度达到27拷贝/反应,检测灵敏度高于普通PCR法,略低于实时荧光PCR法。本方法快速、灵敏,并具有较高的特异性和很好的重复性,可在两小时内对CHIK疑似病例进行准确诊断。利用本方法对入境CHIK患者及国内患者样本进行检测,均取得了良好的效果。结论:本方法适合国境口岸一线及基层卫生机构对CHIK可疑患者进行快速检测,对防止CHIK疫情向我国的传播及保障我国公共卫生安全均具有重要意义。 展开更多
关键词 基孔肯雅病毒 环介导等温基因扩增
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云南基孔肯雅热研究概况 被引量:8
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作者 王艳红 宝福凯 柳爱华 《中国热带医学》 CAS 2013年第9期1159-1162,共4页
基孔肯雅热(Chikungunya fever,CHIK)是由基孔肯雅病毒(Chikungunya virus,CHIKV)引起的一种急性自然疫源性传染病,经伊蚊叮咬而传播。由于CHIK的分布与其传播媒介伊蚊的分布密切相关,因此云南具有引起本病流行的条件,是CHIK主要流行省... 基孔肯雅热(Chikungunya fever,CHIK)是由基孔肯雅病毒(Chikungunya virus,CHIKV)引起的一种急性自然疫源性传染病,经伊蚊叮咬而传播。由于CHIK的分布与其传播媒介伊蚊的分布密切相关,因此云南具有引起本病流行的条件,是CHIK主要流行省份之一。本文拟对云南CHIK研究的历史和现状做一综述。 展开更多
关键词 基孔肯雅热 基孔肯雅病毒 云南
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登革病毒和基孔肯雅病毒检测技术进展 被引量:3
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作者 王共飞 程周祥 +1 位作者 王毅 史永林 《中国热带医学》 CAS 2016年第8期839-842,共4页
登革病毒(Dengue virus,DENV)和基孔肯雅病毒(Chikungunya fever,CHIKV)都是虫媒病毒,具有相同的传播媒介、流行区域和季节分布。这两种病毒还会造成几乎相同的临床表现,特别是在感染的初始阶段,两者无任何可以鉴别的临床特征。而这两... 登革病毒(Dengue virus,DENV)和基孔肯雅病毒(Chikungunya fever,CHIKV)都是虫媒病毒,具有相同的传播媒介、流行区域和季节分布。这两种病毒还会造成几乎相同的临床表现,特别是在感染的初始阶段,两者无任何可以鉴别的临床特征。而这两种病毒感染的治疗和临床管理策略是截然不同的,因此早期准确诊断是必要的。正确的诊断对于疾病监测、疫情控制、疫苗研究和药物开发非常重要。目前的检测技术,目标是检测病毒,病毒成分(抗原或核酸),或宿主的免疫产生的抗体。本文主要描述登革病毒和基孔肯雅病毒检测技术的概况,以及两者诊断技术上的研究进展。 展开更多
关键词 登革病毒 基孔肯雅病毒 同步检测 进展
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Recent progress on chikungunya virus research 被引量:2
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作者 Wenxi An Ningning Ge +2 位作者 Yilin Cao Jin Sun Xia Jin 《Virologica Sinica》 SCIE CAS CSCD 2017年第6期441-453,共13页
Chikungunya virus(CHIKV) is an arbovirus transmitted by Aedes mosquitos in tropical and subtropical regions across the world. After decades of sporadic outbreaks, it re-emerged in Africa,Asia, India Ocean and America ... Chikungunya virus(CHIKV) is an arbovirus transmitted by Aedes mosquitos in tropical and subtropical regions across the world. After decades of sporadic outbreaks, it re-emerged in Africa,Asia, India Ocean and America suddenly, causing major regional epidemics recently and becoming a notable global health problem. Infection by CHIKV results in a spectrum of clinical diseases including an acute self-limiting febrile illness in most individuals, a chronic phase of recurrent join pain in a proportion of patients, and long-term arthralgia for months to years for the unfortunate few. No specific anti-viral drugs or licensed vaccines for CHIKV are available so far. A better understanding of virus-host interactions is essential for the development of therapeutics and vaccines. To this end, we reviewed the existing knowledge on CHIKV's epidemiology, clinical presentation, molecular virology, diagnostic approaches, host immune response, vaccine development, and available animal models. Such a comprehensive overview, we believe, will shed lights on the promises and challenges in CHIKV vaccine development. 展开更多
关键词 chikungunya virus(chikv) EPIDEMIOLOGY molecular virology host immune response vaccine development
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基肯孔雅病毒宿主因子和限制性因子的研究 被引量:1
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作者 殷瀚 张磊亮 《病毒学报》 CAS CSCD 北大核心 2018年第3期430-435,共6页
基肯孔雅病毒(The chikungunya virus,CHIKV)是近年来重新暴发的甲病毒,主要由埃及伊蚊叮咬传播,可引起基肯孔雅热。由于对该病毒的研究尚不完全,目前缺少针对性的预防和治疗方法。CHIKV具有全球暴发的可能性,是公众健康的潜在威胁。... 基肯孔雅病毒(The chikungunya virus,CHIKV)是近年来重新暴发的甲病毒,主要由埃及伊蚊叮咬传播,可引起基肯孔雅热。由于对该病毒的研究尚不完全,目前缺少针对性的预防和治疗方法。CHIKV具有全球暴发的可能性,是公众健康的潜在威胁。近期的研究已经发现许多CHIKV的宿主因子和限制性因子,本文通过总结这些因子,为今后进一步研究CHIKV与宿主细胞的相互作用以及探索其致病机制提供思路。 展开更多
关键词 基肯孔雅病毒(chikv) 宿主因子 宿主限制性因子
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An mRNA vaccine encoding Chikungunya virus E2-E1 protein elicits robust neutralizing antibody responses and CTL immune responses 被引量:1
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作者 Ningning Ge Jin Sun +5 位作者 Zhihua Liu Jiayi Shu Huimin Yan Zhihua Kou Yu Wei Xia Jin 《Virologica Sinica》 SCIE CAS CSCD 2022年第2期266-276,共11页
Arthropod-borne chikungunya virus(CHIKV)infection can cause a debilitating arthritic disease in human.However,there are no specific antiviral drugs and effective licensed vaccines against CHIKV available for clinical ... Arthropod-borne chikungunya virus(CHIKV)infection can cause a debilitating arthritic disease in human.However,there are no specific antiviral drugs and effective licensed vaccines against CHIKV available for clinical use.Here,we developed an m RNA-lipid nanoparticle(m RNA-LNP)vaccine expressing CHIKV E2-E1 antigen,and compared its immunogenicity with soluble recombinant protein s E2-E1 antigen expressed in S2 cells.For comparison,we first showed that recombinant protein antigens mixed with aluminum adjuvant elicit strong antigenspecific humoral immune response and a moderate cellular immune response in C57BL/6 mice.Moreover,s E2-E1vaccine stimulated 12-23 folds more neutralizing antibodies than s E1 vaccine and s E2 vaccine.Significantly,when E2-E1 gene was delivered by an m RNA-LNP vaccine,not only the better magnitude of neutralizing antibody responses was induced,but also greater cellular immune responses were generated,especially for CD8+T cell responses.Moreover,E2-E1-LNP induced CD8~+T cells can perform cytotoxic effect in vivo.Considering its better immunogenicity and convenience of preparation,we suggest that more attention should be placed to develop CHIKV E2-E1-LNP m RNA vaccine. 展开更多
关键词 Chikungunya virus(chikv) mRNA vaccine Neutralizing antibody Cytotoxic T-lymphocytes(CTL)
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Detection, isolation, and characterization of chikungunya viruses associated with the Pakistan outbreak of 2016–2017
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作者 Si-Qinq Liu Xiao Li +8 位作者 Ya-Nan Zhang Ai-Li Gao Cheng-Lin Deng Jun-Hua Li Shoukat Jehan Nadia Jamil Fei Deng Hongping Wei Bo Zhang 《Virologica Sinica》 SCIE CAS CSCD 2017年第6期511-519,共9页
The chikungunya virus(CHIKV) is a mosquito-transmitted alphavirus, which has infected millions of people in Africa, Asia, Americas, and Europe since it reemerged in India and Indian Ocean regions in 2005–2006. Starti... The chikungunya virus(CHIKV) is a mosquito-transmitted alphavirus, which has infected millions of people in Africa, Asia, Americas, and Europe since it reemerged in India and Indian Ocean regions in 2005–2006. Starting in the middle of November 2016, CHIKV has been widely spread, and more than 4,000 cases of infections in humans were confirmed in Pakistan. Here, we report the first isolation and characterization of CHIKV from the Pakistan outbreak. Eight CHIKV strains were newly isolated from human serum samples using a cell culture procedure. A full-length genome sequence and eight complete envelope(E1) sequences of CHIKV from Pakistan were obtained in this study. Alignment of the CHIKV E1 sequences revealed that the eight new CHIKV isolates were highly homogeneous, with only two nonsynonymous substitutions found at generally conserved sites(E99 and Q235). Based on the comparison of 342 E1 sequences, the two nonsynonymous mutations were located in well-recognized domains associated with viral functions such as the cell fusion and vector specificity, suggesting their potential functional importance. Phylogenetic analysis indicated that the CHIKV strains from Pakistan originated from CHIKV circulating in the Indian region. This study helps elucidate the epidemics of CHIKV in Pakistan and also provides a foundation for studies of evolution and expansion of CHIKV in South Asia. 展开更多
关键词 chikungunya virus(chikv) Pakistan virus isolation clinical serum molecular characterization
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