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One Step Quick Detection of Cancer Cell Surface Marker by Integrated NiFe-based Magnetic Biosensing Cell Cultural Chip 被引量:5
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作者 Chenchen Bao Lei Chen +4 位作者 Tao Wang Chong Lei Furong Tian Daxiang Cui Yong Zhou 《Nano-Micro Letters》 SCIE EI CAS 2013年第3期213-222,共10页
RGD peptides has been used to detect cell surface integrin and direct clinical effective therapeutic drug selection. Herein we report that a quick one step detection of cell surface marker that was realized by a speci... RGD peptides has been used to detect cell surface integrin and direct clinical effective therapeutic drug selection. Herein we report that a quick one step detection of cell surface marker that was realized by a specially designed NiF e-based magnetic biosensing cell chip combined with functionalized magnetic nanoparticles. Magnetic nanoparticles with 20-30 nm in diameter were prepared by coprecipitation and modified with RGD-4C, and the resultant RGD-functionalized magnetic nanoparticles were used for targeting cancer cells cultured on the NiF e-based magnetic biosensing chip and distinguish the amount of cell surface receptor-integrin.Cell lines such as Calu3, Hela, A549, CaF br, HEK293 and HUVEC exhibiting different integrin expression were chosen as test samples. Calu3, Hela, HEK293 and HUVEC cells were successfully identified. This approach has advantages in the qualitative screening test. Compared with traditional method, it is fast, sensitive, low cost,easy-operative, and needs very little human intervention. The novel method has great potential in applications such as fast clinical cell surface marker detection, and diagnosis of early cancer, and can be easily extended to other biomedical applications based on molecular recognition. 展开更多
关键词 Magnetic impedance Cancer cell Targeted detection Biosensing system cell cultural chip
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Identify lymphatic metastasis-associated genes in mouse hepatocarcinoma cell lines using gene chip 被引量:19
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作者 BoSong Jian-WuTang +10 位作者 BoWang Xiao-NanCui LiHou LuSun Li-MinMao Chun-HuiZhou YueDu Li-HuiWang Hua-XinWang Ren-ShuZheng LeiSun 《World Journal of Gastroenterology》 SCIE CAS CSCD 2005年第10期1463-1472,共10页
AIM: In order to obtain lymphogenous metastasisassociated genes, we compared the transcriptional profiles of mouse hepatocarcinoma cell lines Hca-F with highly lymphatic metastasis potential and Hca-P with low lymphat... AIM: In order to obtain lymphogenous metastasisassociated genes, we compared the transcriptional profiles of mouse hepatocarcinoma cell lines Hca-F with highly lymphatic metastasis potential and Hca-P with low lymphatic metastasis potential.METHODS: Total RNA was isolated from Hca-F and Hca-P cells and synthesized into double-stranded cDNA. In vitro transcription double-stranded cDNA was labeled with biotin (i.e. biotin-labeled cRNA, used as the probe). The cRNA probes hybridized with Affymetrix GeneChip() MOE430A (containing 22 690 transcripts, including 14 500 known mouse genes and 4 371 ESTs) respectively and the signals were scanned by the GeneArray Scanner. The results were then analyzed by bioinformatics.RESULTS: Out of the 14 500 known genes investigated,110 (0.8%) were up regulated at least 23 fold. Among the total 4 371 ESTs, 17 ESTs (0.4%) (data were not presented) were up regulated at least 23 fold. According to the Gene Ontology and TreeView analysis, the 110genes were further classified into two groups: differential biological process profile and molecular function profile.CONCLUSION: Using high-throughput gene chip method,a large number of genes and their cellular functions about angiogenesis, cell adhesion, signal transduction, cell motility, transport, microtubule-based process, cytoskeleton organization and biogenesis, cell cycle, transcription,chaperone activity, motor activity, protein kinase activity,receptor binding and protein binding might be involved in the process of lymphatic metastasis and deserve to be used as potential candidates for further investigation.Cyclin D1, Fosl1, Hsp47, EGFR and AR, and Cav-1 are selected as the possible candidate genes of the metastatic phenotype, which need to be validated in later experiments.ESTs (data were not presented) might indicate novel genes associated with lymphatic metastasis. Validating the function of these genes is helpful to identify the key or candidate gene/pathway responsible for lymphatic metastasis, which might be used as the diagnostic markers and the therapeutic targets for lymphatic metastasis. 展开更多
关键词 HEPATOCARCINOMA Lymphatic metastasis cell lines Hca-F and Hca-P Gene chip
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CHIP regulates bone mass by targeting multiple TRAF family members in bone marrow stromal cells 被引量:5
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作者 Tingyu Wang Shan Li +5 位作者 Dan Yi Guang-Qian Zhou Zhijie Chang Peter X.Ma Guozhi Xiao Di Chen 《Bone Research》 CAS CSCD 2018年第2期145-154,共10页
Carboxyl terminus of Hsp70-interacting protein(CHIP or STUB1) is an E3 ligase and regulates the stability of several proteins which are involved in different cellular functions. Our previous studies demonstrated tha... Carboxyl terminus of Hsp70-interacting protein(CHIP or STUB1) is an E3 ligase and regulates the stability of several proteins which are involved in different cellular functions. Our previous studies demonstrated that Chip deficient mice display bone loss phenotype due to increased osteoclast formation through enhancing TRAF6 activity in osteoclasts. In this study we provide novel evidence about the function of CHIP. We found that osteoblast differentiation and bone formation were also decreased in Chip KO mice. In bone marrow stromal(BMS) cells derived from Chip^-/- mice, expression of a panel of osteoblast marker genes was significantly decreased. ALP activity and mineralized bone matrix formation were also reduced in Chip-deficient BMS cells. We also found that in addition to the regulation of TRAF6, CHIP also inhibits TNFα-induced NF-κB signaling through promoting TRAF2 and TRAF5 degradation. Specific deletion of Chip in BMS cells downregulated expression of osteoblast marker genes which could be reversed by the addition of NF-κB inhibitor. These results demonstrate that the osteopenic phenotype observed in Chip^-/- mice was due to the combination of increased osteoclast formation and decreased osteoblast differentiation. Taken together, our findings indicate a significant role of CHIP in bone remodeling. 展开更多
关键词 chip regulates bone mass targeting multiple TRAF family members marrow stromal cells
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Identifying EGFR-Expressed Cells and Detecting EGFR Multi-Mutations at Single-Cell Level by Microfluidic Chip 被引量:2
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作者 Ren Li Mingxing Zhou +7 位作者 Jine Li Zihua Wang Weikai Zhang Chunyan Yue Yan Ma Hailin Peng Zewen Wei Zhiyuan Hu 《Nano-Micro Letters》 SCIE EI CAS 2018年第1期148-157,共10页
EGFR mutations companion diagnostics have been proved to be crucial for the efficacy of tyrosine kinase inhibitor targeted cancer therapies. To uncover multiple mutations occurred in minority of EGFR-mutated cells,whi... EGFR mutations companion diagnostics have been proved to be crucial for the efficacy of tyrosine kinase inhibitor targeted cancer therapies. To uncover multiple mutations occurred in minority of EGFR-mutated cells,which may be covered by the noises from majority of unmutated cells, is currently becoming an urgent clinical requirement. Here we present the validation of a microfluidic-chip-based method for detecting EGFR multimutations at single-cell level. By trapping and immunofluorescently imaging single cells in specifically designed silicon microwells, the EGFR-expressed cellswere easily identified. By in situ lysing single cells, the cell lysates of EGFR-expressed cells were retrieved without cross-contamination. Benefited from excluding the noise from cells without EGFR expression, the simple and cost-effective Sanger's sequencing, but not the expensive deep sequencing of the whole cell population, was used to discover multi-mutations. We verified the new method with precisely discovering three most important EGFR drugrelated mutations from a sample in which EGFR-mutated cells only account for a small percentage of whole cell population. The microfluidic chip is capable of discovering not only the existence of specific EGFR multi-mutations,but also other valuable single-cell-level information: on which specific cells the mutations occurred, or whether different mutations coexist on the same cells. This microfluidic chip constitutes a promising method to promote simple and cost-effective Sanger's sequencing to be a routine test before performing targeted cancer therapy. 展开更多
关键词 EGFR mutation Single-cell analysis Microfluidic chip Tyrosine kinase inhibitor
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Stable ^(85)Rb micro vapour cells:fabrication based on anodic bonding and application in chip-scale atomic clocks 被引量:3
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作者 苏娟 邓科 +4 位作者 郭等柱 汪中 陈兢 张耿民 陈徐宗 《Chinese Physics B》 SCIE EI CAS CSCD 2010年第11期243-250,共8页
We describe the microfabrication of ^85Rb vapour cells using a glass-silicon anodic bonding technique and in situ chemical reaction between rubidium chloride and barium azide to produce Rb. Under controlled conditions... We describe the microfabrication of ^85Rb vapour cells using a glass-silicon anodic bonding technique and in situ chemical reaction between rubidium chloride and barium azide to produce Rb. Under controlled conditions, the pure metallic Rb drops and buffer gases were obtained in the cells with a few mm^3 internal volumes during the cell sealing process. At an ambient temperature of 90 ℃ the optical absorption resonance of ^85Rb D1 transition with proper broadening and the corresponding coherent population trapping (CPT) resonance, with a signal contrast of 1.5% and linewidth of about 1.7 kHz, have been detected. The sealing quality and the stability of the cells have also been demonstrated experimentally by using the helium leaking detection and the after-9-month optoelectronics measurement which shows a similar CPT signal as its original status. In addition, the physics package of chip-scale atomic clock (CSAC) based on the cell was realized. The measured frequency stability of the physics package can reach to 2.1 × 10^-10 at one second when the cell was heated to 100 ℃ which proved that the cell has the quality to be used in portable and battery-operated devices. 展开更多
关键词 ^85Rb Micro vapour cell anodic bonding coherent population trapping chip-scale atomic clock frequency stability
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Using the SELDI ProteinChip System to Detect Changes in Protein Expression in Vero Cells after Infection
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作者 Zhi-jun LIU Bin WANG Zhi-yong YAN Xu-xia SONG Dong-meng QIAN Zhi-qiang BAI 《中国病毒学》 CSCD 2007年第1期68-73,共6页
人的疱疹单一的病毒(HSV-1 ) 1 引起美容,眼睛,并且 encephalitic 疾病并且与潜伏的感染和癌症被联系。这里,我们开发了由使用 SELDI 蛋白质薄片在在 vitro 有教养的 Vero 房间检测蛋白质表示的变化在蛋白质水平学习 HSV-1 感染的致... 人的疱疹单一的病毒(HSV-1 ) 1 引起美容,眼睛,并且 encephalitic 疾病并且与潜伏的感染和癌症被联系。这里,我们开发了由使用 SELDI 蛋白质薄片在在 vitro 有教养的 Vero 房间检测蛋白质表示的变化在蛋白质水平学习 HSV-1 感染的致病的一个工具。在有为 12, 24 或 48 h 的 HSV-1 和文化的感染以后,房间被收获并且 lysed。IMAC3 数组被用于 SELDI-TOF-MS 在感染前后检测 proteomic 差别。薄片检测了一系列差别表示蛋白质山峰。有趣地,在 16 912 Da 的山峰和 17 581 Da 与 ISG15 的分子的团精确相应,它可以在感染的过程期间参予抗病毒的活动。因此,我们获得了的结果能用作一个基础学习在病毒和它的主人之间的 HSV-1 和相互作用的致病。另外,他们能为 HSV-1 感染的治疗在新治疗学的目标的发现帮助。关键词 SELDI 蛋白质薄片 - Vero 房间 - HSV-1 - 蛋白质表达式 CLC 数字 R373 基础项目:中国(30540075 ) 的国家自然科学基础; 展开更多
关键词 SELDI Protein chip Vero cells HSV-1 Protein Expression
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Effects of Euphorbiasteroid on gene expression in lung cancer cells based on gene chip
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作者 Zi-Ye Yang Ming-Rui Jiang +8 位作者 Xiao-Tong Wei Zhi-Cheng Wang Zhu-Zhu Yue Jing-Qiu Zhang Meng-Yu Chen Hui-Nan Wang Meng-Lin Wang Shuang-Hui Shi Ying-Zi Wang 《TMR Modern Herbal Medicine》 CAS 2022年第3期48-58,共11页
Objective Using gene chip technology to explore the molecular mechanism of euphorbiasteroid in the treatment of non-small cell lung cancer(NSCLC).Methods A549 cells were used as the in vitro model,and they were random... Objective Using gene chip technology to explore the molecular mechanism of euphorbiasteroid in the treatment of non-small cell lung cancer(NSCLC).Methods A549 cells were used as the in vitro model,and they were randomly divided into control group and different concentrations of euphorbiasteroid administration groups.Each group had 3 duplicate wells,after the cells were cultured in vitro,the cell viability was evaluated by CCK-8 method.Gene chip technology was used to screen the differentially expressed genes(DEGs)between the control group and the euphorbiasteroid administration group.The differential genes were further analyzed for Gene Ontology(GO)function enrichment and Kyoto Encyclopedia of Genes and Genome(KEGG)pathway enrichment analysis.The STRING online analysis platform combined with Cytoscape software to construct a target protein interaction(PPI)network and perform topological analysis to screen key targets,and use Real-time PCR(RT-PCR)and molecular docking technology to verify key targets.Results According to the analysis of gene chip data,276 differentially expressed genes were screened,including 117 up-regulated genes and 159 down-regulated genes.GO analysis showed that differentially expressed genes were mainly involved in cell division,cell proliferation,cell cycle and other processes,involving protein binding,protein kinase binding and other functions,and were mainly distributed in nucleoplasm,chromosomes and other parts.KEGG signaling pathway analysis showed that differentially expressed genes were involved in cell cycle,pyrimidine metabolism,p53 signaling pathway and other pathways.PPI network analysis showed that CCNA2,TOP2A,CCNB1,CDC20,and RRM2 may be the key targets of euphorbiasteroid in the treatment of NSCLC.RT-PCR results showed that the expressions of CCNA2,TOP2A,CCNB1,CDC20,and RRM2 were significantly down-regulated in the euphorbiasteroid administered group,which was consistent with the gene chip results.Molecular docking results showed that euphorbiasteroid had good affinity with key targets and could bind spontaneously and stably.Conclusion The combination of gene chip,RT-PCR technology and molecular docking technology can find out the differential genes after the intervention of euphorbiasteroid,which can be used to explore the mechanism of euphorbiasteroid in the treatment of NSCLC. 展开更多
关键词 Euphorbiasteroid non-Small cell lung cancer Gene chip Differentially expressed genes Molecular docking
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Rapid fabrication of modular 3D paper-basedmicrofluidic chips using projection-based 3D printing
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作者 Mingjun Xie Zexin Fu +5 位作者 Chunfei Lu Sufan Wu Lei Pan Yong He Yi Sun Ji Wang 《Bio-Design and Manufacturing》 SCIE EI CAS CSCD 2024年第5期611-623,共13页
Paper-based microchips have different advantages,such as better biocompatibility,simple production,and easy handling,making them promising candidates for clinical diagnosis and other fields.This study describes ametho... Paper-based microchips have different advantages,such as better biocompatibility,simple production,and easy handling,making them promising candidates for clinical diagnosis and other fields.This study describes amethod developed to fabricate modular three-dimensional(3D)paper-based microfluidic chips based on projection-based 3D printing(PBP)technology.A series of two-dimensional(2D)paper-based microfluidic modules was designed and fabricated.After evaluating the effect of exposure time on the accuracy of the flow channel,the resolution of this channel was experimentally analyzed.Furthermore,several 3D paper-based microfluidic chips were assembled based on the 2D ones using different methods,with good channel connectivity.Scaffold-based 2D and hydrogel-based 3D cell culture systems based on 3D paper-based microfluidic chips were verified to be feasible.Furthermore,by combining extrusion 3D bioprinting technology and the proposed 3D paper-based microfluidic chips,multiorgan microfluidic chips were established by directly printing 3D hydrogel structures on 3D paperbased microfluidic chips,confirming that the prepared modular 3D paper-based microfluidic chip is potentially applicable in various biomedical applications. 展开更多
关键词 Paper-based microfluidic chip Projection-based 3D printing(PBP) Modularization cell culture
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Estimation of cancer cell migration in biomimetic random/oriented collagen fiber microenvironments
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作者 姚静如 李国强 +8 位作者 姚喜耀 周连杰 叶志凯 刘艳平 郑栋天 唐婷 宋克纳 陈果 刘雳宇 《Chinese Physics B》 SCIE EI CAS CSCD 2024年第5期749-756,共8页
Increasing data indicate that cancer cell migration is regulated by extracellular matrixes and their surrounding biochemical microenvironment,playing a crucial role in pathological processes such as tumor invasion and... Increasing data indicate that cancer cell migration is regulated by extracellular matrixes and their surrounding biochemical microenvironment,playing a crucial role in pathological processes such as tumor invasion and metastasis.However,conventional two-dimensional cell culture and animal models have limitations in studying the influence of tumor microenvironment on cancer cell migration.Fortunately,the further development of microfluidic technology has provided solutions for the study of such questions.We utilize microfluidic chip to build a random collagen fiber microenvironment(RFM)model and an oriented collagen fiber microenvironment(OFM)model that resemble early stage and late stage breast cancer microenvironments,respectively.By combining cell culture,biochemical concentration gradient construction,and microscopic imaging techniques,we investigate the impact of different collagen fiber biochemical microenvironments on the migration of breast cancer MDA-MB-231-RFP cells.The results show that MDA-MB-231-RFP cells migrate further in the OFM model compared to the RFM model,with significant differences observed.Furthermore,we establish concentration gradients of the anticancer drug paclitaxel in both the RFM and OFM models and find that paclitaxel significantly inhibits the migration of MDA-MB-231-RFP cells in the RFM model,with stronger inhibition on the high concentration side compared to the low concentration side.However,the inhibitory effect of paclitaxel on the migration of MDA-MB-231-RFP cells in the OFM model is weak.These findings suggest that the oriented collagen fiber microenvironment resembling the late-stage tumor microenvironment is more favorable for cancer cell migration and that the effectiveness of anticancer drugs is diminished.The RFM and OFM models constructed in this study not only provide a platform for studying the mechanism of cancer development,but also serve as a tool for the initial measurement of drug screening. 展开更多
关键词 microfluidic chip random collagen fiber microenvironment(RFM) oriented collagen fiber microenvironment(OFM) cancer cell migration
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Transplantation of human placental chorionic plate-derived mesenchymal stem cells for repair of neurological damage in neonatal hypoxic-ischemic encephalopathy
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作者 Lulu Xue Ruolan Du +8 位作者 Ning Bi Qiuxia Xiao Yifei Sun Ruize Niu Yaxin Tan Li Chen Jia Liu Tinghua Wang Liulin Xiong 《Neural Regeneration Research》 SCIE CAS CSCD 2024年第9期2027-2035,共9页
Neonatal hypoxic-ischemic encephalopathy is often associated with permanent cerebral palsy,neurosensory impairments,and cognitive deficits,and there is no effective treatment for complications related to hypoxic-ische... Neonatal hypoxic-ischemic encephalopathy is often associated with permanent cerebral palsy,neurosensory impairments,and cognitive deficits,and there is no effective treatment for complications related to hypoxic-ischemic encephalopathy.The therapeutic potential of human placental chorionic plate-derived mesenchymal stem cells for various diseases has been explored.However,the potential use of human placental chorionic plate-derived mesenchymal stem cells for the treatment of neonatal hypoxic-ischemic encephalopathy has not yet been investigated.In this study,we injected human placental chorionic plate-derived mesenchymal stem cells into the lateral ventricle of a neonatal hypoxic-ischemic encephalopathy rat model and observed significant improvements in both cognitive and motor function.Protein chip analysis showed that interleukin-3 expression was significantly elevated in neonatal hypoxic-ischemic encephalopathy model rats.Following transplantation of human placental chorionic plate-derived mesenchymal stem cells,interleukin-3 expression was downregulated.To further investigate the role of interleukin-3 in neonatal hypoxic-ischemic encephalopathy,we established an in vitro SH-SY5Y cell model of hypoxic-ischemic injury through oxygen-glucose deprivation and silenced interleukin-3 expression using small interfering RNA.We found that the activity and proliferation of SH-SY5Y cells subjected to oxygen-glucose deprivation were further suppressed by interleukin-3 knockdown.Furthermore,interleukin-3 knockout exacerbated neuronal damage and cognitive and motor function impairment in rat models of hypoxic-ischemic encephalopathy.The findings suggest that transplantation of hpcMSCs ameliorated behavioral impairments in a rat model of hypoxic-ischemic encephalopathy,and this effect was mediated by interleukin-3-dependent neurological function. 展开更多
关键词 behavioral evaluations gene knockout human neuroblastoma cells(SH-SY5Y) human placental chorionic derived mesenchymal stem cells INTERLEUKIN-3 neonatal hypoxic-ischemic encephalopathy nerve injury oxygen-glucose deprivation protein chip small interfering RNA
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Proteomics of the differential protein expressions in human glioma cell line U251 cells infected with human cytomegalovirus,as demonstrated by the surface enhanced laser desorption/ionization(SELDI)protein chip system
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作者 ZHI JUN LIU BIN WANG +5 位作者 YING TIAN ZHI QIANG BAI SHOU YI DING Xu XIA SONG ZHI YONG YAN DONG MENG QIAN 《Journal of Microbiology and Immunology》 2007年第1期46-51,共6页
The proteomics of the differential protein expressions in human glioma cell line U251 cells infected with human cytomegalovirus (HCMV) was investigated at the protein level by using the surface enhanced laser desorp... The proteomics of the differential protein expressions in human glioma cell line U251 cells infected with human cytomegalovirus (HCMV) was investigated at the protein level by using the surface enhanced laser desorption/ionization (SELDI) protein chip system in order to develop a method of study for the pathogenesis of HCMV infection. In this study, the cultured U251 cells were infected with HCMV in good condition and the supernatants of lysates and the extracellular fluids of the cultivated infected cells were quantitatively defined for the expressed proteins. The proteomics of the differential protein expression in cells before and after infection was analyzed by WCX2 arrays on the protein chip reader. It was demonstrated that the eytopathic effects of infected cells appeared on the 5th day after infection, however, the differential protein expression was evident at 6 h after infection as revealed by RT-PCR and mass spectrometry. The protein peaks captured from different batches of samples, from the same sample detected with different arrays or for the different times were all equivalent. With the molecular weight range from 2000 Da to 3000 Da, chip captured 82 peaks from the intracellular fluids and 11 protein peak from the cellular fluid in which compared with the control group, the protein peaks with molecular weight of 13 536.3 Da, 10 046.1 Da and 17 106.2 Da were close to those of β-amyloid protein, caspase-1 precursor and LPS-induced TNF-α factor respectively, which showed brief up-regulation 4 h after infection, and continued to raise 48 h later. These results infer that these proteins may be related to the apoptosis induced by HCMV infection, thus suggesting that the apoptosis induced by HCMV infection may play a role in the pathogenesis of HCMV infection. 展开更多
关键词 SELDI protein chip U251 cells HCMV Protein expression
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利用ChIP-seq技术研究转录因子EDAG在全基因组的结合谱 被引量:3
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作者 董小明 郑巍薇 +3 位作者 尹荣华 詹轶群 杨晓明 李长燕 《中国生物化学与分子生物学报》 CAS CSCD 北大核心 2013年第6期578-584,共7页
为揭示红系分化相关基因(erythroid differentiation-associated gene,EDAG)在造血中的作用机制,利用ChIP-seq分析EDAG的全基因组结合谱.首先从产妇脐带血分离CD34+细胞,EPO诱导CD34+细胞培养5 d.利用EDAG抗体进行染色体免疫共沉淀(chro... 为揭示红系分化相关基因(erythroid differentiation-associated gene,EDAG)在造血中的作用机制,利用ChIP-seq分析EDAG的全基因组结合谱.首先从产妇脐带血分离CD34+细胞,EPO诱导CD34+细胞培养5 d.利用EDAG抗体进行染色体免疫共沉淀(chromatin immunoprecipitation,ChIP)实验、Western印迹法检测EDAG抗体的富集情况.将富集到的DNA样品进行高通量测序,最后利用生物信息学分析测序结果.成功富集染色体DNA,经高通量测序和生物信息学分析,共得到1 292个EDAG结合位点的Peaks数目,代表了975个结合的基因且错误发现率(false discovery rate,FDR)小于0.0001.EDAG Peaks主要分布在基因间区和内含子区.进一步利用Q-PCR对ChIP-Seq数据进行了验证,证实EDAG可结合在检测的靶基因调控区上.将EDAG结合的基因进行基因功能(gene ontology,GO)注释,表明EDAG参与了细胞周期、细胞生长、细胞分化、细胞凋亡及信号通路等多种生物学过程.综上,利用ChIP-seq技术在促红细胞生成素(EPO)诱导分化的CD34+细胞中鉴定了1 292个EDAG结合的peaks对应975个基因,并对该结果进行了随机验证,提示EDAG广泛参与了多种生物学过程.该研究为揭示EDAG的功能及作用机制提供了线索. 展开更多
关键词 红系分化相关基因(EDAG) 染色体免疫共沉淀-高通量测序(chip-seq) CD34+细胞 生物信息学分析
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基于叉指结构的片上小电容标准单元研究
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作者 赵硕 冉自煊 +1 位作者 陈建 杨雁 《计量学报》 北大核心 2025年第1期14-18,共5页
基于Schwarz-Christoffel变换,对叉指电容结构的电容值进行了理论计算,通过理论计算和仿真分析,研究了叉指电容结构几何尺寸和电极对数对片上小电容标准单元的影响,并实现了电容值在10 fF~100 fF的叉指结构电容标准单元的制备和测试验... 基于Schwarz-Christoffel变换,对叉指电容结构的电容值进行了理论计算,通过理论计算和仿真分析,研究了叉指电容结构几何尺寸和电极对数对片上小电容标准单元的影响,并实现了电容值在10 fF~100 fF的叉指结构电容标准单元的制备和测试验证。测试结果表明,片上小电容标准单元的电容值随着叉指电极长度和对数增加电容值的改变将越趋近于线性变化,在10 fF~100 fF范围内片上小电容标准单元的标准不确定度优于0.5%×C+100 aF(C为电容值)。研究结果为进一步制作更宽范围的片上小电容标准单元提供研究基础。 展开更多
关键词 电磁计量 飞法 片上电容标准单元 叉指结构 Schwarz-Christoffel变换
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基于微流控技术的单细胞捕获培养和精准打印
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作者 倪皖江 王琨 +2 位作者 张婷婷 关一民 刘德盟 《微纳电子技术》 2025年第1期84-91,共8页
单细胞是构成复杂生物系统的基本单元,由于细胞间的异质性,群体分析往往无法反映单个细胞的行为。提出了一种微流控芯片,可以从细胞悬浮液中分离出单细胞,并且拥有足够大的空间允许细胞长期稳定培养。在细胞生长一段时间后,驱动芯片底... 单细胞是构成复杂生物系统的基本单元,由于细胞间的异质性,群体分析往往无法反映单个细胞的行为。提出了一种微流控芯片,可以从细胞悬浮液中分离出单细胞,并且拥有足够大的空间允许细胞长期稳定培养。在细胞生长一段时间后,驱动芯片底层互补金属氧化物半导体(CMOS)电路加热相应电阻,从而将细胞打印到基底上进行生物学分析。当细胞悬浮液浓度为5×10^(6) cells/mL、细胞沉降时间为3 min时,单细胞的捕获效率达到38%,且捕获后的细胞在芯片内能稳定培养72 h以上,并能够进行精准打印。这种新型微流控芯片操作简便、成本低廉,为单细胞分析提供了一种新的思路。 展开更多
关键词 单细胞 微流控芯片 细胞捕获 稳定培养 精准打印
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小鼠NPC细胞RFX1ChIP-Seq数据分析
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作者 刘晓杰 赵志虎 +2 位作者 赵小英 张文斗 刘选明 《湖南大学学报(自然科学版)》 EI CAS CSCD 北大核心 2013年第2期59-65,共7页
利用NCBI数据库中小鼠Embryonic Stem Cells(ESC)与Neural ProgenitorCells(NPC)的基因芯片结果及NPC时期的RFX1ChIP-Seq数据,进行有关RFX1的分析,结果表明:RFX1结合位点富集在1,2,4,5,7,9,11染色体上,Y染色体上最少,其他染色体上比较均... 利用NCBI数据库中小鼠Embryonic Stem Cells(ESC)与Neural ProgenitorCells(NPC)的基因芯片结果及NPC时期的RFX1ChIP-Seq数据,进行有关RFX1的分析,结果表明:RFX1结合位点富集在1,2,4,5,7,9,11染色体上,Y染色体上最少,其他染色体上比较均衡;在基因组中结合位点分布区域主要在基因的promoter区域,约有53.2%,其次是intergentic,占22.5%,body区域,占13.1%,enhancer区域,占11.2%.说明RFX1是以结合在基因的promoter区为主要形式对目的基因进行调控.同时在DAVID数据库中用生物信息学方法探索了RFX1靶基因的生物学功能分类. 展开更多
关键词 神经先祖细胞 RFX1 chip—Seq
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基于ChIP-seq筛选睾丸支持细胞中雄激素受体靶基因初步研究
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作者 邓琼 王铸 +3 位作者 张颖 孙睿 张建文 梁辉 《安徽师范大学学报(自然科学版)》 2021年第4期343-348,共6页
雄激素及其受体在精子发生中有重要作用。寻找并鉴定更多雄激素及其受体的靶基因,对阐明雄激素及其受体介导精子发生的分子机制,解析其调控精子发生的网络具有非常重要的科学意义。在本研究中,我们分离了睾丸支持细胞,以睾酮刺激,并以A... 雄激素及其受体在精子发生中有重要作用。寻找并鉴定更多雄激素及其受体的靶基因,对阐明雄激素及其受体介导精子发生的分子机制,解析其调控精子发生的网络具有非常重要的科学意义。在本研究中,我们分离了睾丸支持细胞,以睾酮刺激,并以ARKO小鼠睾丸作为背景对照,进行ChIP-seq和分析验证。数据分析显示了8679个差异表达基因,其中4830个基因在睾酮处理组表达上调,3849个表达下调。我们从差异基因中筛取了43个靶基因进行验证,其中39个基因的启动子区域找到了ARE结合位点。候选靶基因介导雄激素调控精子发生的分子机制仍有待进一步研究。本项目初步鉴定的靶基因可为进一步深入系统研究雄激素及其受体调控精子发生的机制提供参考。 展开更多
关键词 支持细胞 雄激素受体 染色质免疫共沉淀测序
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微流控生物电阻抗传感检测芯片技术综述
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作者 方文静 陈津 +1 位作者 黄汐威 孙玲玲 《集成电路与嵌入式系统》 2025年第2期26-40,共15页
随着单细胞异质性研究的深入,细胞电学特性成为疾病诊断和精准医学的重要研究方向。微流控生物电阻抗传感检测芯片通过高精度测量细胞在电场中的阻抗变化,无需标记即可获取细胞尺寸、膜电容、细胞质电导率等细胞电学特性,显著提升了对... 随着单细胞异质性研究的深入,细胞电学特性成为疾病诊断和精准医学的重要研究方向。微流控生物电阻抗传感检测芯片通过高精度测量细胞在电场中的阻抗变化,无需标记即可获取细胞尺寸、膜电容、细胞质电导率等细胞电学特性,显著提升了对细胞异质性的检测能力。相比传统方法,微流控生物电阻抗检测芯片技术具有高灵敏度、操作简便、无损检测等优势,在疾病早期诊断、药物筛选以及个性化治疗中展现出广泛的应用前景。文章首先阐述了该技术的基本原理与系统设计;接着分析了微流控通道与电极配置的优化进展,并讨论了其在细胞分类检测、药物评估等领域的应用;最后,分析了当前面临的技术挑战与未来发展趋势,并展望了其在精准医学和疾病早期诊断中的广泛应用前景。 展开更多
关键词 微流控 生物芯片 电阻抗检测 细胞电学特性 单细胞分析
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基于机器视觉的多通道单细胞分离方法
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作者 梁权伟 关一民 《传感器与微系统》 北大核心 2025年第2期151-154,共4页
单细胞分离已成为单细胞分析不可或缺的工具。针对目前的单细胞分离方法效率低、无寻址性的问题,提出了在专用生物打印的微流控芯片上,采集多通道喷孔图像。利用Suzuki轮廓跟踪算法获取喷孔区域内的所有轮廓,通过对轮廓区域的面积、拟... 单细胞分离已成为单细胞分析不可或缺的工具。针对目前的单细胞分离方法效率低、无寻址性的问题,提出了在专用生物打印的微流控芯片上,采集多通道喷孔图像。利用Suzuki轮廓跟踪算法获取喷孔区域内的所有轮廓,通过对轮廓区域的面积、拟合椭圆长短轴和重心位置坐标设置阈值,识别出喷孔图像。并通过浅层卷积神经网络识别孔内单细胞。最后,将识别出的单细胞以热发泡的形式打印出来。已经证明,这种识别多通道的创新性方法用于分离单个细胞,准确率可以达到94%以上,同时,大幅提升了单细胞分离的效率,并提供单细胞可溯源性的证据。 展开更多
关键词 单细胞识别 卷积神经网络 微流控芯片
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基于微流控芯片评估富血小板血浆促进子宫内膜细胞的增殖
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作者 闻哲嘉 吕芳 《中国组织工程研究》 CAS 北大核心 2025年第10期2091-2096,共6页
背景:富血小板血浆可促进薄型子宫内膜细胞的增殖,但存在剂量难以控制、取样困难等问题。微流控芯片具有高通量、低消耗、操作简便等优点,为模拟子宫内膜细胞在体微环境提供了新途径。目的:利用三通道微流控芯片构建富血小板血浆促进子... 背景:富血小板血浆可促进薄型子宫内膜细胞的增殖,但存在剂量难以控制、取样困难等问题。微流控芯片具有高通量、低消耗、操作简便等优点,为模拟子宫内膜细胞在体微环境提供了新途径。目的:利用三通道微流控芯片构建富血小板血浆促进子宫内膜细胞增殖的研究模型。方法:从1名女性外周静脉血中提取富血小板血浆。采用含不同浓度[0%(对照),0.5%,1%,2%]富血小板血浆的无血清细胞培养基培养人子宫内膜间质细胞,采用划痕实验检测细胞迁移,CCK-8法检测细胞增殖。利用聚二甲基硅氧烷胶制备微流控芯片,该微流控芯片设计有3个通道,中间通道为细胞外基质水凝胶通道,左右两侧分别为人子宫内膜间质细胞及富血小板血浆通道,3个通道之间保存有可以相互沟通以及实现物质交换的面积,实验组两侧通道分别加入人子宫内膜间质细胞(绿色荧光蛋白GFP标记)和含0.5%富血小板血浆的无血清培养基,对照组两侧通道分别加入人子宫内膜间质细胞(绿色荧光蛋白GFP标记)和无血清细胞培养基,共培养48 h后,采用Ki67免疫荧光染色观察细胞增殖与迁移。结果与结论:(1)细胞划痕实验和CCK-8检测结果显示,与对照组相比,0.5%,1%,2%浓度的富血小板血浆可促进人子宫内膜间质细胞的迁移与增殖(P <0.05),并且0.5%浓度富血小板血浆的促进细胞迁移与增殖作用强于其他2个浓度(P <0.05);(2)Ki67免疫荧光染色结果显示,与对照组相比,实验组人子宫内膜间质细胞的增殖和迁移能力更强;(3)实验证实通过三通道微流控芯片可以模拟子宫内膜细胞的微环境,同时利用该系统验证了富血小板血浆可显著促进子宫内膜间质细胞的增殖与迁移。 展开更多
关键词 微流控芯片 富血小板血浆 子宫内膜间质细胞 子宫内膜增殖 迁移 细胞外基质 薄型子宫内膜 子宫内膜相关疾病
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CHIP基因稳定转染人慢性髓系白血病K562细胞诱发有丝分裂异常 被引量:1
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作者 高莹 王妍 +4 位作者 张旭辉 陈国柱 杜芝燕 徐元基 于晓妉 《中国实验血液学杂志》 CAS CSCD 2008年第4期763-767,共5页
本研究旨在建立可稳定高效表达E3泛素连接酶CHIP(carboxyl terminus of Hsc70/Hsp70-interactingprotein)的慢性髓系白血病细胞株K562细胞模型,以观察过表达CHIP对细胞生物学特性的影响。采用脂质体介导的方法,经G418筛选及有限稀释法... 本研究旨在建立可稳定高效表达E3泛素连接酶CHIP(carboxyl terminus of Hsc70/Hsp70-interactingprotein)的慢性髓系白血病细胞株K562细胞模型,以观察过表达CHIP对细胞生物学特性的影响。采用脂质体介导的方法,经G418筛选及有限稀释法成功建立了可稳定表达野生型CHIP及其TPR及U-box结构域缺失突变体的慢性髓系白血病K562细胞克隆。对过表达CHIP的K562细胞用MTT法检测体外增殖,流式细胞术检测细胞周期,Western blot法检测相关蛋白表达,瑞氏-姬姆萨染色进行细胞形态学观测。结果表明,过表达野生型CHIP对K562细胞体外增殖能力没有明显影响,细胞周期中G2/M期细胞比率增加,CHIP对BCR-ABL激酶的稳定性没有影响,但却明显导致细胞形态异常,表现为细胞体积增大及异常核细胞数目增多,出现异常有丝分裂相等,提示CHIP分子对细胞有丝分裂过程可能具有调控作用。结论:野生型CHIP可诱导K562细胞发生有丝分裂异常。 展开更多
关键词 chip CML K562细胞 有丝分裂
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