The evolution of the coral reefs in the middle and north parts of the South China Sea and its relation with tectonic and eustatic movements

In this paper, the morphogenesis, stratigraphic sequences and dates of the coral reefs in the middle and north parts of the South China Sea are discussed, the position of the distributary regions of Cenozoic coral reefs in plate tectonics, the relationships of coral-reef evolutionary characteristics and dates with sea-basin spreading. Neogene sea-water transgression and Quaternary global climate-eustatic fluctuation are expounded and proved, and the latitudinal variation of the distribution of coral reefs in various geologic times are summed up.

Analysis on coral reefs mapping using SPOT5 data at the Dongsha Atoll

Coral reefs are an sensitive-to-environment complex marine ecosystem. The ecosystem of corals is rich in biodiversity. Remote sensing offers a powerful tool for categorizing coral reefs and is the most cost - effective approach for the large - scale reef survey. The Dongsha Atoll, more than 300 km2 with an average depth of 10 m, is located at the northern continental margin of the South China Sea. It has been abused by destructive fishing during recent decades. Three satellite imageries （Quickbird2, ETM ＋ and SPOTS） are used to evaluate the capabilities of SPOT5 imagery to provide data that are useful for categorizing the current distribution of coral reefs therein. During the data processing, unsupervised classification functions are adopted for ETM ＋ and SPOT5 data, while the supervised classification method is used for Quickbird2. The classes are （or not） merged into coral reef, and then will be operated by vectorization, simplification, and topological analysis. There are 1 331 coral reefs larger than 100 m2 with a detection limit of 3 × 3 pixels at the multi - band data of Quickbird2, which is taken as the comparison baseline. The results extracted from SPOT5 and ETM images are less in number and area than those from the Quickbird2 image, whereas the results from SPOT5 data are better than those of ETM data at the silty lagoon due to its higher resolution. SPOT5 XS band 2 fails to distinguish the deep substrate inside the atoll compared with ETM data because of its poor penetration capability. Only SPOT XS band 1 cannot be used to differentiate coral reef from sand bottom. Merging the SPOT5 multi - bands data with the spatial resolution of SPOT5 pan - data and referring to ETM imagery are expected to provide an optimal satellite - based approach for mapping of coral reefs.

Remote sensing expert system of South China Sea coral reefs

Based on the remote sensing information and related condition such as geology, geomorphology, hydrology and meteorology, a remote sensing expert system of the South China Sea coral reefs is developed by using a new remote sensing twin-tree structure. The object is recognized and the type of coral reef is distinguished through the combined utilization of spectrum and image primitive's spatial relation and related information.

Marine heatwaves in the Gulf of Mexico 1983‒2021: Statistics, recent intensifications, and threats on coral reefs

There is the current lack of comprehensive understanding of the hotspots,frequency,duration,spatiotemporal trends,and physical drivers of marine heatwaves(MHWs)within the Gulf of Mexico(GoM).Here,a series of high-resolution satellite and reanalysis products are used to examine their spatiotemporal characteristics,trends,and possible geophysical triggers of MHWs.Possible impacts of the MHW on coral reefs are also discussed.Results reveal an increasing trend in their frequency,duration,and intensities from 1983–2021,particularly after 2016.It identifies MHWs hotspots within the GoM,notably the northern and western shelves and the Loop Current.The study further documents an intense MHW event from late 2020 to early 2021 near the Yucatan Channel,south of 24°N,attributing its development to oceanic processes such as wind anomalies,anticyclonic eddies,and current-driven heat transport anomalies.The occurrence of this MHW event potentially increased thermal stress on the Campeche and Tuxtlas Reef Systems.This research illuminates the increasing trends and impacts of MHWs in the GoM,providing valuable insights for understanding and predicting the effects of climate change on marine ecosystems.

Remote sensing composite information's trend surface analysis of Nansha Islands coral islets and reefs' top

Based on the remote sensing information feature of Nansha coral islets and reefs that controlled by the Nansha Islands local area's goological structure and growth law, by means of mathematical model and PC, the Nansha Islands coral islets and reefs' top geological data' spatial distribution and local change trend are simulated by using the trend surface system on the remote sensing composite information, and an scientific interpretation and local comparison of Nansha coral islands and islets' spatial distribution feature are made.

Paleoecology of Benthic Foraminifera in Coral Reefs Recorded in the Jurassic Tuwaiq Mountain Formation of the Khashm Al-Qaddiyah Area, Central Saudi Arabia

Thirty three benthic foraminiferal species belong to 23 genera and 16 families have been recorded from the coral reefs of the Callovian Tuwaiq Formation, Khashm AI-Qaddiyah area, Central Saudi Arabia. Three species： Astacolus qaddiyahensis, Nodosaria riyadhensis, Siderolites jurassica are believed to be new. Nearly all identified foraminifera are of Atlantie-Miditeranean affinity. The foraminiferal assemblage recorded in the present work is mixed of open marine, moderately deep marine conditions associations and shallow to deep lagoon. The reefal part of upper Twiaq Formation may have been deposited in shallow water of lower to middle shelf depth （20-50 m） as indicated by abundant corals and benthic foraminifera. The coral fauna and bearing benthic foraminifera indicated moderate water energy.

Coral reef ecological pump for gathering and retaining nutrients and exporting carbon:a review and perspectives

How coral reefs with high productivity and biodiversity can flourish in oligotrophic tropical oceans has inspired substantial research on coral reef ecosystems.Increasing evidence shows that similar to water in an oasis in the desert,there are stable nutrient supplies to coral reefs in oligotrophic oceans.Here,with emphasis on the fluxes of organic matter,we summarize at the ecosystem level(1)the multiple input pathways of external nutrients,(2)the storage of nutrients in reef organisms,(3)the efficient retaining and recycling of dissolved and particulate organic matter within coral reef ecosystems,(4)the distinctly high phytoplankton productivity and biomass inside and near oceanic coral reefs,and(5)the export of reef-related organic carbon to adjacent open oceans.These properties enable coral reefs to function as ecological“pumps”for gathering nutrients across ecosystems and space,retaining and recycling nutrients within the ecosystem,supporting high phytoplankton productivity,and exporting organic carbon to adjacent open oceans.Particularly,the high phytoplankton productivity and biomass make waters around coral reefs potential hotspots of carbon export to ocean depths via the biological pump.We demonstrate that organic carbon influx is vital for coral reef ecosystems’carbon budget and carbon export.The concept of the coral reef ecological pump provides a framework to improve the understanding of the functioning of the coral reef ecosystem and its responses to disturbance.Prospects of the coral reef ecological pump in coral reef studies are discussed in changing oceans driven by human activities and global change in the Anthropocene.

Microbiome Engineering:A Promising Approach to Improve Coral Health

The world’s coral reefs are threatened by the cumulative impacts of global climate change and local stressors.Driven largely by a desire to understand the interactions between corals and their symbiotic microorganisms,and to use this knowledge to eventually improve coral health,interest in coral microbiology and the coral microbiome has increased in recent years.In this review,we summarize the role of the coral microbiome in maintaining a healthy metaorganism by providing nutrients,support for growth and development,protection against pathogens,and mitigation of environmental stressors.We explore the concept of coral microbiome engineering,that is,precise and controlled manipulation of the coral microbiome to aid and enhance coral resilience and tolerance in the changing oceans.Although coral microbiome engineering is clearly in its infancy,several recent breakthroughs indicate that such engineering is an effective tool for restoration and preservation of these valuable ecosystems.To assist with identifying future research targets,we have reviewed the common principles of microbiome engineering and its applications in improving human health and agricultural productivity,drawing parallels to where coral microbiome engineering can advance in the not-too-distant future.Finally,we end by discussing the challenges faced by researchers and practitioners in the application of microbiome engineering in coral reefs and provide recommendations for future work.

Stressed Coral Reef Identification Using Deep Learning CNN Techniques

Deep learning is a machine learning technique that allows the computer to process things that occur naturally to humans.Today,deep learning techniques are commonly used in computer vision to classify images and videos.As a result,for challenging computer vision problems,deep learning provides state of the art solutions to it.Coral reefs are an essential resource of the earth.A new study finds the planet has lost half of its coral reefs since 1950.It is necessary to restore and prevent damage to coral reefs as they play an important role in maintaining a balance in the marine ecosystem.This proposed work helps to prevent the corals from bleaching and restore them to a healthy condition by identifying the root cause of the threats.In the proposed work,using deep learning CNN techniques,the images are classified into Healthy and Stressed coral reefs.Stressed coral reefs are an intermediate state of coral reef between healthy and bleached coral reefs.The pre-trained models Resnet50 and Inception V3 are used in this study to classify the images.Also,a proposed CNN model is built and tested for the same.The results of Inception V3 and Resnet50 are improved to 70%and 55%by tuning the hypermeters such as dropouts and batch normalisation.Similarly,the proposed model is tuned as required and obtains a maximum of up to 90%accuracy.With large datasets,the optimum amount of neural networks and tuning it as required brings higher accuracy than other methods.

Survey of reefs based on Landsat 8 operational land imager(OLI)images in the Nansha Islands, South China Sea

A detailed survey of the reefs in the Nansha Islands＇ sea that are of strategic importance is conducive to their future development. In this study, a total of 50 Landsat 8 operational land imager（OLI） images were used to analyze the geological features and spectral characteristics of the Nansha reefs. The exposed islands/sandbanks,reef flats and sub-tidal reefs were identified with the near-infrared band, the red and green bands, and the blue band, respectively. Based on the relationships among various characteristics and bands illustrated in the OLI images, the maximum between-cluster variance threshold algorithm（OTSU method） and the mathematical morphology were employed to extract characteristic parameters of the spatial geometry of the reefs from top to bottom, which were subsequently operated by a series of post-processing methods such as vectorization,simplification and topological analysis. Among the 132 standalone reefs and 16 atolls that are identified in the study, four reefs have yet to be named in the Standard Names of Various Islands in the South China Sea and the website Nansha Islands Online（http：//www.nansha.org/）. Another 24 ones are exposed to the atmosphere even during high tides. Taiping Island with an area of 0.57 km^2 represents the largest exposed geological feature. This study demonstrated the applicability of medium-resolution satellite images to derive the coral reef information effectively and thus provided information for the related departments that are responsible to manage the coast.An improved resolution of multispectral bands with the panchromatic band in higher spatial resolution（15 m for OLI image） is expected to provide an optimum satellite based approach to map marine habitats.

The research on the remote sensing＇s information tree model of the Nansha coral islets and reef＇s spatial structure

Based on the Nansha coral islets and reef's time-space attributes,and the intension and extension of the remote sensing information, the concept model and concept system of coral islets and reef are proposed.Then twin-tree remote sensing information model for different kinds of reef is constructed by using abstracted islets and reef's primitive, and the structure recognition system for coral islets and reef type is developed.

Spatio-temporal Variations of Sea Surface Wind in Coral Reef Regions over the South China Sea from 1988 to 2017

The seasonal and interannual variabilities of sea surface wind(SSW)in the South China Sea(SCS),especially in coral reef regions such as Nansha Islands,Xisha Islands,Zhongsha Islands and Dongsha Islands were investigated in detail using the Blended Sea Winds dataset(1988-2017).Annual and monthly variations of SSW and sea surface temperature(SST)in the four zones were investigated.Empirical Orthogonal Function(EOF)analysis of wind field was performed to aid in better understanding the different spatial patterns.The results indicate that,as observed in the spatial distribution of the first mode of monthly mean wind speed anomaly,the mag-nitudes in the four island zones are all negative and are similar to each other,showing that the variations of SSW in the four island zones are consistent.In the second mode,the magnitudes in Nansha Islands are opposite to those in the other three zones.The spatial distribution of the third mode reflects regional differences.The maximum annual SSW appears in Dongsha Islands,and the minimum appears in Nansha Islands.The interannual variations of SSW in all island zones are basically concurrent.The island zones with high SSW mostly have low SST,and vice versa.There may be an inverse relationship between SSW and SST in coral reef regions in the SCS.The multiyear monthly variations of SSW in the island zones present a'W'-shaped structural variation.Each island undergoes two months of minimum SSW every year,one during March-May(MAM)and the other during September-November(SON).Both months are in mon-soon transition periods.During the months with low SSW,high SST appears.The SST peaks almost correspond to the SSW troughs.This further indicates that SSW and SST may have opposite changes in coral reef regions.Coral bleaching events often correspond to years of high SST and low SSW.

The effects of four transplantation methods on five coral species at the Sanya Bay

Coral transplantation is considered as one of the major tools to increase coral abundance for degraded coral reefs.To investigate the effects of various methods and coral species in transplantation, coral fragments（n=902） of five coral species were transplanted by four methods at Luhuitou, the Sanya Bay, Hainan Province, China, where the reef has been over-exploited and is still threatened by human activities and natural disasters. Ten months after the transplant, the average survivorship of the transplanted corals was 45.5%. Methodologies had different effects on the transplanted corals, but none of them was efficacious for all coral species. Methodology could not change the decreasing trend for Montipora foliosa and Acropora hyacinthus, although it did slow down their decline. All transplants of A. hyacinthus and M. foliosa had high mortalities and significant decrease on survival area, while Porites andrewsi and Galaxea fascicularis had lower mortalities and partial mortalities. Only one method had significant effect on increasing survival area of G. fascicularis, same as P. andrewsi. Out of the five transplanted coral species, Pocillopora damicornis was the only species that had living tissue area increase in all applied methods, while the others had decreased live tissue area in one or more methods. The results of this study suggested that performing coral transplantation in a highly threatened area was not efficient unless the threats were diminished or erased. Moreover, proper species selection for coral transplantation is crucial, especially in a disturbed environment. Methodology, although having limited effects on improving results of coral transplantation, cannot compensate the maladjustment of vulnerable species to the stresses on the Luhuitou Reef. Coral transplantation on Luhuitou Reef should not be performed unless the stresses are under controlled,and corals with good tolerance to the environment should be considered first.

Mechanical Properties and Microstructure of Portland Cement Concrete Prepared with Coral Reef Sand

The feasibility of using coral reef sand（CRS） in Portland cement concrete is investigated by testing the mechanical property and microstructure of concrete. The composition, structure and properties of the CRS are analyzed. Mechanical properties and microstructure of concrete with CRS are studied and compared to concrete with natural river sand. The relationship between the microstructure and performance of CRS concrete is established. The CRS has a porous surface with high water intake capacity, which contributes to the mechanical properties of concrete. The interfacial transition zone between the cement paste and CRS is densified compared to normal concrete with river sand. Hydration products form in the pore space of CRS and interlock with the matrix of cement paste, which increases the strength. The total porosity of concrete prepared with CRS is higher than that with natural sand. The main difference in pore size distribution is the fraction of fine pores in the range of 100 nm.

Connectivity of fish assemblages along the mangrove-seagrasscoral reef continuum in Wenchang, China

Understanding the connectivity of fish among different typical habitats is important for conducting ecosystembased management, particularly when designing marine protected areas(MPA) or setting MPA networks. To clarify of connectivity among mangrove, seagrass beds, and coral reef habitats in Wenchang, Hainan Province,China, the fish community structure was studied in wet and dry seasons of 2018. Gill nets were placed across the three habitat types, and the number of species, individuals, and body size of individual fish were recorded. In total, 3 815 individuals belonging to 154 species of 57 families were collected. The highest number of individuals and species was documented in mangroves(117 species, 2 623 individuals), followed by coral reefs(61 species,438 individuals) and seagrass beds(46 species, 754 individuals). The similarity tests revealed highly significant differences among the three habitats. Approximately 23.4% species used two habitats and 11.0% species used three habitats. A significant difference(p<0.05) in habitat use among eight species(Mugil cephalus, Gerres oblongus, Siganus fuscescens, Terapon jarbua, Sillago maculata, Upeneus tragula, Lutjanus russellii, and Monacanthus chinensis) was detected, with a clear ontogenetic shift in habitat use from mangrove or seagrass beds to coral reefs. The similarity indices suggested that fish assemblages can be divided into three large groups namely coral, seagrass, and mangrove habitat types. This study demonstrated that connectivity exists between mangrove–seagrass–coral reef continuum in Wenchang area;therefore, we recommend that fish connectivity should be considered when designing MPAs or MPA network where possible.

Abundance,Diversity and Functional Potentials of Planktonic Bacteria and Microeukaryotes in the Coral-Reef System of Xisha Islands,China

Corals influence microorganisms within the surrounding seawater,yet the diversities and functions of seawater bacteria and microeukaryotes in coral-reef systems have not been well addressed.We collected 40 seawater samples in outer coral reef flats and semi-closed inner lagoons from the surface,middle and bottom layers in the pristine coral-reef system of Xisha Islands,South China Sea.We detected the abundance,composition and distribution of bacteria and microeukaryotes using flow cytometry,qPCR and high throughput sequencing techniques,and profiled the potential ecological roles based on the information of 16S and 18S rDNA sequencing.In terms of flow cytometry,Prochlorococcus dominated the autotrophs with cell abundance ranging from 5.8×10^(2)to 5.44×10^(3)cells mL−1 seawater.Based on qPCR,the 16S rDNA copies were much higher in coral reef flats than in lagoons(P=0.003).The bacterial communities held significantly lower diversity in bottom waters compared with surface and middle waters(P<0.05),which were dominated by SAR11,Flavobacteriales,and Synechococcus.Alveolata represented most of the microeukaryotic communities with Dinophyceae and Syndiniales well represented in all samples.Neither bacterial nor microeukaryotic community exhibited distinct layer or niche pattern,however,Haptophyta and Picozoa decreased with depth and SAR 86,MAST-3 and Picozoa were enriched in lagoons(P<0.05).To adapt the nutrient-poor and organic matter-rich environment,bacterial nitrogen fixation and assimilatory/dissimilatory nitrate reduction were active in the system,and mixotrophy was the most important trophic strategy among microeukaryotes.The study highlighted the ecological adaptability of seawater microbes to the unique coral-reef environments.

Dynamic simulation of tropical coral reef ecosystem being disturbed by multiple situations

In consideration of the rapid degradation of coral reef ecosystems, the establishment of models is helpful to comprehend the degradation mechanism of coral reef ecosystems and predict the development process of coral reef communities. According to the characteristics of complex ecosystem of tropical coral reefs in China, the coral reef functional group is the core level variable;combined with the multiple feedback effects of coral reef functional groups and environmental changes, the study presents a coral reef ecosystem dynamics model with hermatypic corals as the core. Based on the simulation of the assumed initial value and the internal feedback of the system, the results show that in the basic simulation(relative health conditions), the coverage area of live corals and coral reefs generally decreased first and then increased, and increased by 4.67% and 6.38% between2010 and 2050, respectively. Based on the calibration model and the current situation of the studied area, the multi-factor disturbance effects of coral reef communities were simulated and explored by setting up three scenarios involving fishing policy, terrestrial deposition, and inorganic nitrogen emissions. Among them, in the single factor disturbance, the fishing policy exerts the most direct impact on the community decline;and the succession phenomenon is obvious;the terrestrial sedimentation has a faster and more integrated effect on the community decline;the effect of inorganic nitrogen emission on the community decline is relatively slow. In the double/multi-factor disturbance, the superimposed disturbance will aggravate the multi-source feedback effect of the coral reef communities development, accelerate the community decay rate, and make its development trajectory more complicated and diverse. This method provides a scientific and feasible method for simulating the damage of long-term coral reef community and exploring the development law and adaptive management of coral reef ecosystems. In the future, it can be further studied in the ecological restoration process and decisionmaking direction of coral reefs.

ESR and U-series ages of coral reef samples from shallow drill holes in the South China Sea

The ages of coral reef samples from several shallow drill holes in the South China Sea are determined by ESR and U-series (230Th/234U) methods. The experimental results show ideal agreement between ESR and U-series ages and that the coral reefs were formed in the early Holocene. In the determination of natural total dose of coral reef by use of the additive dose method good results can be obtained by exponential fitting, no matter how the effect of dose saturation is. It was found that the ratio of the natural ESR signal intensity ( I0) to the ESR signal intensity at dose saturation ( Imax) of sample can reflect the significance of a irradiation efficiency-k value. Using the k value of sample determined by the formula given in this paper, the precision of ESR dating of marine carbonates can be improved.

Change in coral reef benthic communities in the Lembeh Strait and Likupang, North Sulawesi, Indonesia

Anthropogenic impacts and natural disturbances have been intense recently in the global scale, affecting the composition of coral reef benthic communities from coral to algal dominated reefs. However, this condition does not always occur considering corals are able to recover when the stressors falter. This study aims to investigate the change in coral reef benthic communities and the relationship among benthic categories. The study was carried out in 2014 and 2016 at five sites, three sites in the Lembeh Strait and two sites in Likupang, North Sulawesi Province. Underwater Photo Transect(UPT) was used at depth of around 4–6 m in slope areas. The result indicated that the benthic communities were slightly changing: the percent covers of hard corals, sponges, soft corals, macroalgae and substrate categories were not significantly different between the years but category of others, particularly seasonally growing hydroid, increased significantly, occupying the available substrates and overtopping other benthos surrounding. The study also found that there was a significant relationship between the change in benthic gradient and the number of hard coral colonies: when the composition becomes less complex, the number of colony declines. In contrast, the hard coral diversity remained unchanged, suggesting the coral reefs apparently have an ecological resilience(sustainable species diversity) against the change although ecological complexity declines. In addition, the hard coral cover was significantly correlated with soft coral and sponge covers, which did not change significantly among the years. In general, the coral reefs in North Sulawesi might experience a temporary blip due to the increasing percent cover of others, and be predicted to recover as there was no indication of soft corals and sponges to increase significantly. However, it is necessary to investigate the dynamic of benthic communities in different depth gradients to gain a comprehensive understanding as the communities respond differently to the light intensity.

Construction and analysis of a coral reef trophic network for Qilianyu Islands,Xisha Islands

Qilianyu Islands coral reefs(QICR),located in the northeastern part of the South China Sea,has been affected by human activities and natural disturbance.To characterize the trophic structure,ecosystem properties and keystone species of this region,a food-web model for the QICR is developed using methods involving a mass-balance approach with Ecopath with Ecosim software.Trophic levels range from 1.00 for detritus and primary producers to 3.80 for chondrichthyes.The mean trophic transfer efficiency for the entire ecosystem is 13.15%,with 55%of total energy flow originating from primary producers.A mixed trophic impact analysis indicates that coral strongly impacts most components of this ecosystem.A comparison of our QICR model with that for other coral reef ecosystems suggests that the QICR ecosystem is immature and/or is degraded.