Penalized Empirical Likelihood Via Adaptive LASSO for Cox＇s Proportional Hazards Model

Penalized empirical likelihood inferential procedure is proposed for Cox＇s pro- portional hazards model with adaptive LASSO（ALASSO）. Under reasonable conditions, we show that the proposed method has oracle property and the limiting distribution of a penal- ized empirical likelihood ratio via ALASSO is a chi-square distributions. The advantage of penalized empirical likelihood is illustrated in testing hypothesis and constructing confidence sets by simulation studies and a real example.

Comparison of Cox proportional hazards model,Cox proportional hazards with time-varying coefficients model,and lognormal accelerated failure time model:Application in time to event analysis of melioidosis patients

Objective:To compare the prognostic factors of mortality among melioidosis patients between lognormal accelerated failure time(AFT),Cox proportional hazards(PH),and Cox PH with time-varying coefficient(TVC)models.Methods:A retrospective study was conducted from 2014 to 2019 among 453 patients who were admitted to Hospital Sultanah Bahiyah,Kedah and Hospital Tuanku Fauziah,Perlis in Northern Malaysia due to confirmed-cultured melioidosis.The prognostic factors of mortality from melioidosis were obtained from AFT survival analysis,and Cox’s models and the findings were compared by using the goodness of fit methods.The analyses were done by using Stata SE version 14.0.Results:A total of 242 patients(53.4%)survived.In this study,the median survival time of melioidosis patients was 30.0 days(95%CI 0.0-60.9).Six significant prognostic factors were identified in the Cox PH model and Cox PH-TVC model.In AFT survival analysis,a total of seven significant prognostic factors were identified.The results were found to be only a slight difference between the identified prognostic factors among the models.AFT survival showed better results compared to Cox's models,with the lowest Akaike information criteria and best fitted Cox-snell residuals.Conclusions:AFT survival analysis provides more reliable results and can be used as an alternative statistical analysis for determining the prognostic factors of mortality in melioidosis patients in certain situations.

Clinical Study on the Impact of Long-term Survival Quality in 204 Postoperative Patients with Breast Cancer by Cox Proportional Hazard Models

The aim of study was to evaluate clinical characteristics, social support and the association with the prognosis of breast cancer patients. A total of 204 participants were followed from 2003 until the end of 2008. Information about patients with breast cancer was submitted by investigators. Data were analyzed by Cox’s proportional hazard model. The clinical staging of breast cancer we used was the TNM classification. A 'T' score is based upon the size and/or extent of invasion. The 'N' score indicates the extent of lymph node involvement. Age at diagnose was associated with protective factors (HR=0.972;95%CI (0.834-1.130)), T staging (HR=2.075;95%CI (1.424-3.022)), N staging (HR=1.513;95%CI (1.066-2.148)), were associated with risk factor. Two survival graphs of nodes with negative effects by histology and nodes with positive effects by histology was analyzed by log-rank test, there was statistically significant relationship between two survival graphs (χ2 =136.8467, p <.0001). Age at diagnoses, Clinical stage tumor and node could contribute to the development of breast cancer and disease free survival in Chinese women.

A Cox Proportional Hazard Model Approach to Age at First Sexual Intercourse in Nigeria

Early age at first sexual intercourse comes with many negative sexual outcomes namely: having unprotected sex on first sexual intercourse, condom misuse, high rate of sexually transmitted infections (STIs), teenage pregnancy, increased number of sexual partners, etc. In this paper, we considered some socio-demographic and cultural factors and their relationship with age at first sexual intercourse so as to reduce the numerous negative sexual outcomes of early age at first sexual intercourse using the 2018 Nigerian Demographic and Health Survey data. The analysis was made using the Cox proportional hazard model and the Kaplan-Meier plot. The result shows that some respondents started having their first sexual intercourse at the age of 8 years and about 54.4% of the respondents had their first sexual intercourse before age 17 years. The median age of first sexual intercourse is 16 years which implies that about 50% of the respondents had their first sexual intercourse on or before their 16th birthday. Education, religion, region and residence significantly affects the age of first sexual intercourse while circumcision has no significant effect.

A Statistical Model with Non-Linear Effects and Non-Proportional Hazards for Breast Cancer Survival Analysis

The Cox proportional hazard model is being used extensively in oncology in studying the relationship between survival times and prognostic factors. The main question that needs to be addressed with respect to the applicability of the Cox PH model is whether the proportional hazard assumption is met. Failure to justify the subject assumption will lead to misleading results. In addition, identifying the correct functional form of the continuous covariates is an important aspect in the development of a Cox proportional hazard model. The purpose of this study is to develop an extended Cox regression model for breast cancer survival data which takes non-proportional hazards and non-linear effects that exist in prognostic factors into consideration. Non-proportional hazards and non-linear effects are detected using methods based on residuals. An extended Cox model with non-linear effects and time-varying effects is proposed to adjust the Cox proportional hazard model. Age and tumor size were found to have nonlinear effects. Progesterone receptor assay status and age violated the proportional hazard assumption in the Cox model. Quadratic effect of age and progesterone receptor assay status had hazard ratio that changes with time. We have introduced a statistical model to overcome the presence of the proportional hazard assumption violation for the Cox proportional hazard model for breast cancer data. The proposed extended model considers the time varying nature of the hazard ratio and non-linear effects of the covariates. Our improved Cox model gives a better insight on the hazard rates associated with the breast cancer risk factors.

Cox Proportional Hazard Model for Survival Time of Neonatal Mortality in Neonatal Intensive Care Unit of Hospitals in River Nile State-Sudan

Cox Proportional Hazard model is a popular statistical technique for exploring the relationship between the survival time of neonates and several explanatory variables. It provides an estimate of the study variables’ effect on survival after adjustment for other explanatory variables, and allows us to estimate the hazard (or risk) of death of newborn in NICU of hospitals in River Nile State-Sudan for the period (2018-2020). Study Data represented (neonate gender, mode of delivery, birth type, neonate weight, resident type, gestational age, and survival time). Kaplan-Meier method is used to estimate survival and hazard function for survival times of newborns that have not completed their first month. Of 700 neonates in the study area, 25% of them died during 2018-2020. Variables of interest that had a significant effect on neonatal death by Cox Proportional Hazard Model analysis were neonate weight, resident type, and gestational age. In Cox Proportional Hazard Model analysis all the variables of interest had an effect on neonatal death, but the variables with a significant effect included, weight of neonate, resident type and gestational age.

A Software Reliability Model for OSS Including Various Fault Data Based on Proportional Hazard-Rate Model

The software reliability model is the stochastic model to measure the software reliability quantitatively. A Hazard-Rate Model is the well-known one as the typical software reliability model. We propose Hazard-Rate Models Considering Fault Severity Levels (CFSL) for Open Source Software (OSS). The purpose of this research is to make the Hazard-Rate Model considering CFSL adapt to baseline hazard function and 2 kinds of faults data in Bug Tracking System (BTS), i.e., we use the covariate vectors in Cox proportional Hazard-Rate Model. Also, we show the numerical examples by evaluating the performance of our proposed model. As the result, we compare the performance of our model with the Hazard-Rate Model CFSL.

Exclusive Hypothesis Testing for Cox's Proportional Hazards Model

Exclusive hypothesis testing is a new and special class of hypothesis testing.This kind of testing can be applied in survival analysis to understand the association between genomics information and clinical information about the survival time.Besides,it is well known that Cox's proportional hazards model is the most commonly used model for regression analysis of failure time.In this paper,the authors consider doing the exclusive hypothesis testing for Cox's proportional hazards model with right-censored data.The authors propose the comprehensive test statistics to make decision,and show that the corresponding decision rule can control the asymptotic TypeⅠerrors and have good powers in theory.The numerical studies indicate that the proposed approach works well for practical situations and it is applied to a set of real data arising from Rotterdam Breast Cancer Data study that motivated this study.

Optimal Generalized Case-Cohort Analysis with Cox's Proportional Hazards Model

Generalized case-cohort design has been proved to be a cost-effective way to enhance the efficiency of large epidemiological cohort. In this article, we propose an inference procedure for estimating the unknown parameters in Cox＇s proportional hazards model in generalized case-cohort design and establish an optimal sample size allocation to achieve the maximum power at a given budget. The finite sample performance of the proposed method is evaluated through simulation studies. The proposed method is applied to a real data set from the National Wilm＇s Tumor Study Group.

Application of a 2 Parameter Weibull Distribution in Modeling of State Holding Time in HIV/AIDS Transition Dynamics

This study investigates the application of the two-parameter Weibull distribution in modeling state holding times within HIV/AIDS progression dynamics. By comparing the performance of the Weibull-based Accelerated Failure Time (AFT) model, Cox Proportional Hazards model, and Survival model, we assess the effectiveness of these models in capturing survival rates across varying gender, age groups, and treatment categories. Simulated data was used to fit the models, with model identification criteria (AIC, BIC, and R2) applied for evaluation. Results indicate that the AFT model is particularly sensitive to interaction terms, showing significant effects for older age groups (50 - 60 years) and treatment interaction, while the Cox model provides a more stable fit across all age groups. The Survival model displayed variability, with its performance diminishing when interaction terms were introduced, particularly in older age groups. Overall, while the AFT model captures the complexities of interactions in the data, the Cox model’s stability suggests it may be better suited for general analyses without strong interaction effects. The findings highlight the importance of model selection in survival analysis, especially in complex disease progression scenarios like HIV/AIDS.

The burden of upper motor neuron involvement is correlated with the bilateral limb involvement interval in patients with amyotrophic lateral sclerosis:a retrospective observational study

Amyotrophic lateral sclerosis is a rare neurodegenerative disease characterized by the involvement of both upper and lower motor neurons.Early bilateral limb involvement significantly affects patients'daily lives and may lead them to be confined to bed.However,the effect of upper and lower motor neuron impairment and other risk factors on bilateral limb involvement is unclear.To address this issue,we retrospectively collected data from 586 amyotrophic lateral sclerosis patients with limb onset diagnosed at Peking University Third Hospital between January 2020 and May 2022.A univariate analysis revealed no significant differences in the time intervals of spread in different directions between individuals with upper motor neuron-dominant amyotrophic lateral sclerosis and those with classic amyotrophic lateral sclerosis.We used causal directed acyclic graphs for risk factor determination and Cox proportional hazards models to investigate the association between the duration of bilateral limb involvement and clinical baseline characteristics in amyotrophic lateral sclerosis patients.Multiple factor analyses revealed that higher upper motor neuron scores(hazard ratio[HR]=1.05,95%confidence interval[CI]=1.01–1.09,P=0.018),onset in the left limb(HR=0.72,95%CI=0.58–0.89,P=0.002),and a horizontal pattern of progression(HR=0.46,95%CI=0.37–0.58,P<0.001)were risk factors for a shorter interval until bilateral limb involvement.The results demonstrated that a greater degree of upper motor neuron involvement might cause contralateral limb involvement to progress more quickly in limb-onset amyotrophic lateral sclerosis patients.These findings may improve the management of amyotrophic lateral sclerosis patients with limb onset and the prediction of patient prognosis.

Analysis of Length of Stay (LOS) Data from the Medical Records of Tertiary Care Hospital in Saudi Arabia for Five Diagnosis Related Groups: Application of Cox Prediction Model

Background: One of the main objectives of hospital managements is to control the length of stay (LOS). Successful control of LOS of inpatients will result in reduction in the cost of care, decrease in nosocomial infections, medication side effects, and better management of the limited number of available patients’ beds. The length of stay (LOS) is an important indicator of the efficiency of hospital management by improving the quality of treatment, and increased hospital profit with more efficient bed management. The purpose of this study was to model the distribution of LOS as a function of patient’s age, and the Diagnosis Related Groups (DRG), based on electronic medical records of a large tertiary care hospital. Materials and Methods: Information related to the research subjects were retrieved from a database of patients admitted to King Faisal Specialist Hospital and Research Center hospital in Riyadh, Saudi Arabia between January 2014 and December 2016. Subjects’ confidential information was masked from the investigators. The data analyses were reported visually, descriptively, and analytically using Cox proportional hazard regression model to predict the risk of long-stay when patients’ age and the DRG are considered as antecedent risk factors. Results: Predicting the risk of long stay depends significantly on the age at admission, and the DRG to which a patient belongs to. We demonstrated the validity of the Cox regression model for the available data as the proportionality assumption is shown to be satisfied. Two examples were presented to demonstrate the utility of the Cox model in this regard.

SICA for Cox's Proportional Hazards Model with a Diverging Number of Parameters

The smooth integration of counting and absolute deviation （SICA） penalized variable selection procedure for high-dimensional linear regression models is proposed by Lv and Fan （2009）. In this article, we extend their idea to Cox＇s proportional hazards （PH） model by using a penalized log partial likelihood with the SICA penalty. The number of the regression coefficients is allowed to grow with the sample size. Based on an approximation to the inverse of the Hessian matrix, the proposed method can be easily carried out with the smoothing quasi-Newton （SQN） algorithm. Under appropriate sparsity conditions, we show that the resulting estimator of the regression coefficients possesses the oracle property. We perform an extensive simulation study to compare our approach with other methods and illustrate it on a well known PBC data for predicting survival from risk factors.

基于贝叶斯Cox风险比例回归的兰州市HIV感染者/AIDS患者死亡影响因素分析

[目的]了解兰州市HIV/AIDS报告病例相关特征的构成情况,分析艾滋病相关死亡的影响因素。[方法]通过收集兰州市2011-2019年HIV/AIDS报告病例信息,采用生存分析方法,构建贝叶斯Cox风险比例回归模型分析影响死亡的相关因素。[结果]本研究共选取2312例HIV/AIDS患者,其中艾滋病相关死亡45例。多因素回归结果显示,患者年龄越大,死亡风险越高;确诊时为AIDS患者的死亡风险是HIV感染者的13.91倍;与未接受CD4检测的患者相比,接受CD4检测的患者的死亡风险降低;进行抗病毒治疗者的死亡风险是未进行抗病毒治疗者的0.22倍。[结论]确诊时年龄、病程阶段、是否接受抗病毒治疗是兰州市HIV/AIDS患者艾滋病相关死亡的影响因素,因此要加强艾滋病相关人群健康教育,提倡早发现、早诊断、早治疗,扩大艾滋病检测与治疗的覆盖面,延长艾滋病患者的生存时间。

Jackknifed random weighting for Cox proportional hazards model

The Cox proportional hazards model is the most used statistical model in the analysis of survival time data.Recently,a random weighting method was proposed to approximate the distribution of the maximum partial likelihood estimate for the regression coefficient in the Cox model.This method was shown not as sensitive to heavy censoring as the bootstrap method in simulation studies but it may not be second-order accurate as was shown for the bootstrap approximation.In this paper,we propose an alternative random weighting method based on one-step linear jackknife pseudo values and prove the second accuracy of the proposed method.Monte Carlo simulations are also performed to evaluate the proposed method for fixed sample sizes.

多结局Cox模型在医学中的应用和Stata实现

目的 探讨生存分析中多结局风险比俐模型在实际研究中的应用。方法 采用多结局的比例风险模型,采用偏似然估计和饺正方差估计值,引入新的协变量,同一因素的不同结局的风险函数比(HR)不同。结果通过对实例的分析显示该方法在实际应用中较好地解决了同一因素对应不同结局风险函数比(HR)不同的问题。结论对于不同结局,定义协变量的相应取值,使多结局比例风险模型可估计和推断同一因素对应不同结局的风险函数比。

应用Cox's模型研究根治性贲门癌的长期生存因素

目的 :研究影响贲门癌的预后因素。方法 :对 15 8例贲门癌根治术后患者作随访调查 ,应用统计软件对影响其术后的 16项可能因素作如下分析 :(1)单因素分析 Kruskal- wallis检验 ;(2 ) Cox's模型的多因素分析。结果 :确定了淋巴结转移总数、浸润深度、年龄、组织学分型为贲门癌根治术后的预后因子。结论 :根据 Cox's模型筛选的影响贲门癌预后的因子 ,帮助临床医师选择合理治疗方案 。

糖尿病肾脏疾病预后影响因素的COX比例风险回归模型分析

目的基于COX比例风险回归模型分析糖尿病肾脏疾病(diabetic kidney disease,DKD)预后的影响因素,为临床早期评估和防治DKD提供科学的依据。方法收集多中心(河南中医药大学第一附属医院、河南中医药大学第三附属医院、河南省中医院及郑州市人民医院)2010—2021年就诊治疗的DKD患者资料,包括一般资料、实验室指标、中医辨证分型及中医药治疗,以肾小球滤过率(eGFR)下降≥50%、血肌酐(Scr)翻倍、DKD 5期、死亡为结局指标,随访其发生时间及情况,利用COX比例风险回归模型分析筛选DKD预后影响因素。结果本研究最终纳入1947例患者,随访时间为4.65(4.557~4.746)年,发生复合终点事件305例(15.67%)。单因素COX回归分析结果表明,不同年龄、DKD病程≥4年、饮酒史、吸烟史、高血压、冠心病、脑血管病、糖尿病足、糖尿病眼病、糖化血红蛋白(HbA1c)、血尿酸(SUA)、Scr、24 h尿蛋白定量(24 h-UTP)、eGFR、湿热血瘀证、脾肾气虚兼湿聚血瘀证、脾肾阳虚兼血瘀证、中药熏洗、服用中药患者DKD预后情况比较,差异有统计学意义(P<0.05)。多因素COX回归分析结果表明,年龄[HR(95%CI)=2.52(1.92,3.30)]、DKD病程[HR(95%CI)=1.62(1.09,2.42)]、吸烟史[HR(95%CI)=1.61(1.13,2.29)]、饮酒史[HR(95%CI)=1.41(1.01,1.95)]、脑血管病[HR(95%CI)=1.33(1.01,1.75)]、糖尿病眼病[HR(95%CI)=1.43(1.13,1.82)]、SUA[HR(95%CI)=1.72(1.26,2.33)]、24 h-UTP[HR(95%CI)=1.48(1.14,1.91)]、脾肾气虚兼湿聚血瘀证[HR(95%CI)=2.22(1.44,3.43)]与DKD发生终点事件的风险关系密切(P<0.05),服用中药[HR(95%CI)=2.57(2.00,3.31)]能够减少终点事件的发生(P<0.05)。结论年龄、DKD病程、吸烟史、饮酒史、脑血管病、糖尿病眼病、SUA、24 h-UTP、脾肾气虚兼湿聚血瘀证是影响DKD患者预后的危险因素,而服用中药治疗为其保护因素。

基于SPSS因子分析的肝细胞癌预后因素的Cox比例风险回归模型

目的探讨基于SPSS因子分析的肝细胞癌(肝癌)预后因素的Cox比例风险回归模型的可行性。方法采用SPSS13.0统计软件及Microsoft Office Excel 2007对140例肝癌患者以及44个预后因素进行分析,比较传统Cox比例风险回归模型与基于因子分析的Cox比例风险回归模型分析结果的优缺点。结果传统Cox比例风险回归模型中,44个预后因素中经单因素分析后有25个进入多因素分析,多因素分析中有5个因素进入Cox比例风险回归模型方程,其中因素X5在单因素分析和多因素分析中的结论相反,提示预后因素存在多重共线性。因子分析提取了13个公因子,利用提取的公因子进行Cox比例风险回归模型分析,结果有7个公因子进入Cox比例风险回归模型方程,对方程中的公因子重新命名后符合专业实际,便于解释。结论基于SPSS因子分析的肝癌预后因素的Cox比例风险回归模型能很好地解决因素间存在的多重共线性问题。

Log-normal censored regression model detecting prognostic factors in gastric cancer:A study of 3018 cases

AIM:To investigate the efficiency of Cox proportional hazard model in detecting prognostic factors for gastric cancer.METHODS:We used the log-normal regression model to evaluate prognostic factors in gastric cancer and compared it with the Cox model.Three thousand and eighteen gastric cancer patients who received a gastrectomy between 1980 and 2004 were retrospectively evaluated.Clinic-pathological factors were included in a log-normal model as well as Cox model.The akaike information criterion (AIC) was employed to compare the efficiency of both models.Univariate analysis indicated that age at diagnosis,past history,cancer location,distant metastasis status,surgical curative degree,combined other organ resection,Borrmann type,Lauren's classification,pT stage,total dissected nodes and pN stage were prognostic factors in both log-normal and Cox models.RESULTS:In the final multivariate model,age at diagnosis,past history,surgical curative degree,Borrmann type,Lauren's classification,pT stage,and pN stage were significant prognostic factors in both log-normal and Cox models.However,cancer location,distant metastasis status,and histology types were found to be significant prognostic factors in log-normal results alone.According to AIC,the log-normal model performed better than the Cox proportional hazard model (AIC value:2534.72 vs 1693.56).CONCLUSION:It is suggested that the log-normal regression model can be a useful statistical model to evaluate prognostic factors instead of the Cox proportional hazard model.