Manure management is an essential component of dairy production. Nutrient-laden, field-applied dairy manure often serves as a fertilizer source, but can also pose environmental threats if not properly managed. The Haa...Manure management is an essential component of dairy production. Nutrient-laden, field-applied dairy manure often serves as a fertilizer source, but can also pose environmental threats if not properly managed. The Haak dairy farm, located in Decatur, Arkansas, was granted a permit by the Arkansas Department of Environmental Quality (ADEQ) to employ a unique method in treating and storing cattle manure generated during the milking process. This method includes minimizing water use in wash water, dry scraping solids to combine with sawdust for composting and pumping effluent underground into a sloped concrete basin that serves as secondary solid separator before transporting the manure effluent into an interception trench and an adjacent grassed field to facilitate manure nutrient uptake and retention. The Arkansas Discovery Farm program (ADF) is conducting research to evaluate the environmental performance of the dairy’s milk center wash water treatment system (MCWW) by statistical analysis, characterization of phosphorus (P) migration in soil downslope from the inception trench, temperature measurements, and nutrient analysis of a stored dry stack manure/sawdust mixture. Goals included determining possible composting effectiveness along with comparisons to untreated dairy manure and quantifying the use of on-farm water. Results from this research demonstrated that: 1) The MCWW was effective at retaining manure-derived nutrients and reducing field nutrient migration as the MCWW interception trench had significantly higher total nitrogen (TN) (804.2 to 4.1), total phosphorus (TP) (135.6 to 1.5), and water extractable phosphorus (WEP) (55.0 to 1.0) concentrations in milligrams per liter (mg⋅L<sup>-1</sup>) than the downhill freshwater pond respectively;2) temperature readings of the manure dry stack indicated heightened levels of microbial and thermal activity, but did not reach a standard composting temperature of 54°C;3) manure dry stack nutrient content was typically higher than untreated dairy manure when measured on a “dry basis” in ppm, but was lower on an “as is basis” in ppm and kg/metric ton;and 4) water meter readings showed that the greatest use of on-farm water was for farm-wide cattle drinking (18.77), followed by water used in the milking center (3.45) and then followed by human usage (0.02) measured in cubic meters per day (m<sup>3</sup>⋅d<sup>-1</sup>). These results demonstrate that practical innovations in agricultural engineering and environmental science, such as the Haak dairy’s manure treatment system, can effectively reduce environmental hazards that accompany the management of manure at this dairy operation.展开更多
This study investigates how financial literacy and behavioral traits affect the adoption of electronic payment(ePayment)services in Japan.We construct a financial literacy index using a representative sample of 25,000...This study investigates how financial literacy and behavioral traits affect the adoption of electronic payment(ePayment)services in Japan.We construct a financial literacy index using a representative sample of 25,000 individuals from the Bank of Japan’s 2019 Financial Literacy Survey.We then analyze the relationship between this index and the extensive and intensive usage of two types of payment services:electronic money(e-money)and mobile payment apps.Using an instrumental variable approach,we find that higher financial literacy is positively associated with a higher likelihood of adopting ePayment services.The empirical results suggest that individuals with higher financial literacy use payment services more frequently.We also find that risk-averse people are less likely to adopt and use ePayment services,whereas people with herd behavior tend to adopt and use ePayment services more.Our empirical results also suggest that the effects of financial literacy on the adoption and use of ePayment differ among people with different behavioral traits.展开更多
This work;It was made to determine the positive and negative usage information, attitudes and behaviors of social networking networks for users. Today, it is well known how the wide social effects of social networking...This work;It was made to determine the positive and negative usage information, attitudes and behaviors of social networking networks for users. Today, it is well known how the wide social effects of social networking sites are widespread and effective. As far as it can be followed from written and visual media, it causes significant damages for attitudes and behaviors for individuals. Looking at the results of the study, it seems impossible to limit the time and necessity of these networks for people, but it is understood that people force their limits and capacity. It was determined that the general acceptance and rejection areas are mixed and the dominant distinctive effects were weakened. Unable to prevent social dissolution and deterioration was realized by these social networks of networks. However, we cannot only talk about negative effects because their positive effects should be mentioned. Data were obtained in this direction. For example, some segments encourage the users of these sites to have more freedom, to develop democracy and human rights awareness. However, the real problem is when and where to stand. This study;Social networking networks use information, attitudes and behaviors;It was carried out for the purpose of evaluating the use of nicknames and networks for the use of networks. The data of the study were obtained by the application of a questionnaire and the data obtained were analyzed with appropriate statistical analysis methods. In the first part of the study, field study/operational concept scanning is performed and theoretical information is included. In the second part, the purpose of the study, the problem status, the importance of the study, limitations, assumptions, problem question, research method, research universe and sample are specified and informed. In the third section, the data obtained using appropriate statistical methods are analyzed. In the last section, some important suggestions and comments are made in the light of the data obtained.展开更多
[目的/意义]对比分析相同主题的不同类型科学文献的使用行为,利用用户学术行为数据全面测评学术论文影响力。[方法/过程]基于Web of Science数据库中学术论文使用次数,分析比较不同学科文献的使用差异。从文献使用入手,收集2013-2017年3...[目的/意义]对比分析相同主题的不同类型科学文献的使用行为,利用用户学术行为数据全面测评学术论文影响力。[方法/过程]基于Web of Science数据库中学术论文使用次数,分析比较不同学科文献的使用差异。从文献使用入手,收集2013-2017年3D打印领域的论文数据,以化学、工程文献为对比分析对象,从论文的学科视角分析使用次数与被引频次之间的相关性,分析高使用与高引用(Top 10%)论文的重合文献,探测文献使用差异,并进行独立样本T检验。[结果/结论]U1与被引次数成微弱正相关,U2与被引次数显著性相关;两学科的科学论文在使用上存在统计学意义上的显著差异,可能原因是不同学科学者的文献使用行为不同。此外,文献类型对使用次数有影响,综述类文献信息量较为丰富,从而可以获得更多的使用、引用。展开更多
新型数据的涌现一直是推动信息计量学前行的重要动力,Web of Science(Wo S)给出的学术文献用量级数据Usage可望在影响力维度、学科差异、行为动机三个理论方面为引文分析提供补充视角。本研究以2013年物理学、计算机、经济学和图书情报...新型数据的涌现一直是推动信息计量学前行的重要动力,Web of Science(Wo S)给出的学术文献用量级数据Usage可望在影响力维度、学科差异、行为动机三个理论方面为引文分析提供补充视角。本研究以2013年物理学、计算机、经济学和图书情报学被SCI和SSCI收录的166 767篇论文为研究样本,探索性地研究了该Usage数据的测度特征。结果显示,相较于引文数据,Usage更具测评区分度与敏感性;其在高频局部呈现出近似正偏态分布,于累积整体涌现出近似幂律分布;Usage的测评结果具有独立性,且与引文结果没有本质对立。虽然Wo S平台的Usage仍有笼统性、可伪性和封闭性之局限,但仍不失为配合引文数据、提供丰富影响力测评视域的可能选择之一。图4。表6。参考文献23。展开更多
Codon usage in chloroplast genome of six seed plants (Arabidopsis thaliana, Populus alba, Zea mays, Triticum aestivum, Pinus koraiensis and Cycas taitungensis) was analyzed to find general patterns of codon usage in...Codon usage in chloroplast genome of six seed plants (Arabidopsis thaliana, Populus alba, Zea mays, Triticum aestivum, Pinus koraiensis and Cycas taitungensis) was analyzed to find general patterns of codon usage in chloroplast genomes of seed plants. The results show that chloroplast genomes of the six seed plants had similar codon usage patterns, with a strong bias towards a high representation of NNA and NNT codons. In chloroplast genomes of the six seed plants, the effective number of codons (ENC) for most genes was similar to that of the expected ENC based on the GC content at the third codon position, but several genes with low ENC values were laying below the expected curve. All of these data indicate that codon usage was dominated by a mutational bias in chloroplast genomes of seed plants and that selection appeared to be limited to a subset of genes and to only subtly affect codon usage. Meantime, four, six, eight, nine, ten and 12 codons were defined as the optimal codons in chloroplast genomes of the six seed plants.展开更多
Apple(Malus×domestica) has been proposed as an important woody plant and the major cultivated fruit trees in temperate regions. Apple whole genome sequencing has been completed, which provided an excellent oppo...Apple(Malus×domestica) has been proposed as an important woody plant and the major cultivated fruit trees in temperate regions. Apple whole genome sequencing has been completed, which provided an excellent opportunity for genome-wide analysis of the synonymous codon usage patterns. In this study, a multivariate bioinformatics analysis was performed to reveal the characteristics of synonymous codon usage and the main factors affecting codon bias in apple. The neutrality, correspondence, and correlation analyses were performed by Codon W and SPSS(Statistical Product and Service Solutions) programs, indicating that the apple genome codon usage patterns were affected by mutational pressure and selective constraint. Meanwhile, coding sequence length and the hydrophobicity of proteins could also influence the codon usage patterns. In short, codon usage pattern analysis and determination of optimal codons has laid an important theoretical basis for genetic engineering, gene prediction and molecular evolution studies in apple.展开更多
在经济全球化背景下,出于贸易交流、文化传播等活动的需要,世界语言—英语被广泛学习。各国语言学家粗略地把英语分为英国英语和美国英语两大变体。因为美国的强国地位及其好莱坞效应,美国英语在各种场合较之英国英语被更广泛使用。而...在经济全球化背景下,出于贸易交流、文化传播等活动的需要,世界语言—英语被广泛学习。各国语言学家粗略地把英语分为英国英语和美国英语两大变体。因为美国的强国地位及其好莱坞效应,美国英语在各种场合较之英国英语被更广泛使用。而在与美国接壤的加拿大,一直被语言学家定义为以英国英语为基础,受美国英语强烈影响的加拿大英语仍在全球化背景下保持着自己的语言特色。文章通过对Guide to Canadian English Usage(第二版)的解析,粗略列举加拿大英语中现存的特色词汇并与英、美英语进行比较、分析。展开更多
Synonymous codon usage pattern presumably reflects gene expression optimization as a result of molecular evolution. Though much attention has been paid to various model organisms ranging from prokaryotes to eukaryotes...Synonymous codon usage pattern presumably reflects gene expression optimization as a result of molecular evolution. Though much attention has been paid to various model organisms ranging from prokaryotes to eukaryotes, codon usage has yet been extensively investigated for model legume Medicago truncatula. In present study, 39 531 available coding sequences (CDSs) from M. truncatula were examined for codon usage bias (CUB). Based on analyses including neutrality plots, effective number of codons plots, and correlations between optimal codons frequency and codon adaptation index, we conclude that natural selection is a major driving force in M. truncatula CUB. We have identified 30 optimal codons encoding 18 amino acids based on relative synonymous codon usage. These optimal codons characteristically end with A or T, except for AGG and TTG encoding arginine and leucine respectively. Optimal codon usage is positively correlated with the GC content at three nucleotide positions of codons and the GC content of CDSs. The abundance of expressed sequence tag is a proxy for gene expression intensity in the legume, but has no relatedness with either CDS length or GC content. Collectively, we unravel the synonymous codon usage pattern in M. truncatula, which may serve as the valuable information on genetic engineering of the model legume and forage crop.展开更多
[Objective] The objective of this study was to understand the codon usage bias pattern of banana pathogenesis-related 17 gene, Basic Secretory Protease gene(MaBSP). [Method] Relative codon usage patterns of MaBSP were...[Objective] The objective of this study was to understand the codon usage bias pattern of banana pathogenesis-related 17 gene, Basic Secretory Protease gene(MaBSP). [Method] Relative codon usage patterns of MaBSP were calculated using the software CodonW version 1.4.2. and the web-based tool(http://kazusa.or.jp/codon/).[Result] Our findings showed that C-ended and G-ended codons were the most preferential except the TER codon UGA which was coded for by just one codon. The ENc value, relationship between AT bias and GC bias, Random synonymous codon usage(RSCU) and CAI all showed that codon bias usage existed in MaBSP gene.[Conclusion] The codon usage patterns of MaBSP gene is principally influenced by natural selection in the third position. However, other multiple factors also influence this pattern.展开更多
Codon usage bias(CUB) is a unique property of genome which refers to non-random usage of synonymous codons in coding sequences. The present study makes an attempt to find out the pattern of CUB in chloroplast(cp) gene...Codon usage bias(CUB) is a unique property of genome which refers to non-random usage of synonymous codons in coding sequences. The present study makes an attempt to find out the pattern of CUB in chloroplast(cp) genes among three tea species, i.e., Camellia sinensis var. assamica(Assam tea), Camellia sinensis var. sinensis(Chinese tea) and Camellia pubicosta(wild tea species) as no work on CUB was reported earlier. To understand the patterns of codon usage among the cp genes of three tea groups, we used bioinformatic tools to investigate the protein coding sequences of cp genes. In our present study, the mean nucleobase T was the highest whereas C was the lowest in all the three tea groups. The overall AT content was more than GC content, i.e., genes were AT rich. The scaled chi-square(SCS) value indicated that the CUB of cp genes was low. The codon CGT(Arg) was over-represented in C. sinensis var. sinensis whereas GGA(Pro) was over-represented in C. pubicosta species. Heatmap study revealed that most of the GC ending codons showed positive correlations between codon usage and GC3 while AT ending codons exhibited negative correlations. From neutrality plot analysis, it was evident that natural selection had played a major role, while mutation pressure exerted a minor effect in the CUB of cp genes in three tea groups. Highly significant(P<0.01) positive correlation was found between SCS and synonymous codon usage order(SCUO) of cp genes which suggested that high expression of cp genes was associated with high degree of CUB.展开更多
An integrated energy service company in an industrial park or commercial building is responsible for managing all energy sources in their local region, including electricity, water, gas, heating, and cooling. To reduc...An integrated energy service company in an industrial park or commercial building is responsible for managing all energy sources in their local region, including electricity, water, gas, heating, and cooling. To reduce energy wastage and increase energy utilization, it is necessary to perform efficiency analyses and diagnoses on integrated energy systems(IESs). However, the integrated energy data necessary for energy efficiency analyses and diagnoses come from a wide variety of instruments, each of which uses different transmission protocols and data formats. This makes it challenging to handle energy-flow data in a unified manner. Thus, we have constructed a unified model for diagnosing energy usage abnormalities in IESs. Using this model, the data are divided into working days and non-working days, and benchmark values are calculated after the data have been weighted to enable unified analysis of several types of energy data. The energy-flow data may then be observed, managed, and compared in all aspects to monitor sudden changes in energy usage and energy wastage. The abnormal data identified and selected by the unified model are then subjected to big-data analysis using technical management tools, enabling the detection of user problems such as abnormalities pertaining to acquisition device, metering, and energy usage. This model facilitates accurate metering of energy data and improves energy efficiency. The study has significant implications in terms of fulfilling the energy saving.展开更多
Future or smart community, which mainly refers to the development of community information and communication technology(ICT) platforms or devices, has received considerable attention from urban governments and scholar...Future or smart community, which mainly refers to the development of community information and communication technology(ICT) platforms or devices, has received considerable attention from urban governments and scholars. However, only a few studies have been conducted to test the actual effects of using these community ICT platforms or devices on the community satisfaction of residents. Therefore, the present study conducts a survey in 40 communities in Nanjing, China and uses a mixed linear regression model to determine the relationship between community ICT usage and community satisfaction. Results indicate that residents with high-level community ICT usage are more satisfied with their community than those with low-level community ICT usage. Moreover, evident differences are observed regarding the influence of new commodity, old commodity and affordable housing communities in Nanjing. These findings are meaningful for the construction and development of future communities.展开更多
Species diversity and ethno-medicinal usage of 39 species of invasive plants were explored in and around two protected areas, Khadimnagar National Park (KNP) and Rema-Kalenga Wildlife Sanctu- ary (RKWS), of northe...Species diversity and ethno-medicinal usage of 39 species of invasive plants were explored in and around two protected areas, Khadimnagar National Park (KNP) and Rema-Kalenga Wildlife Sanctu- ary (RKWS), of northeastern Bangladesh,. Status of invasive plants were investigated in 60 sample plots with 5 different habitat types, including forest, roadside, homestead, fallow land and others (ponds, canals, water logged areas, agricultural land, etc.). Data about the usage of invasive plants in traditional health care were collected through interviewing 110 households. Among the five habitat types, fallow land (28 species).possessed the highest number of species, followed by roadside (25 species), forest (23 species), homestead (22 species) and others (13 species). Based on the survey, invasive plants of study areas were also categorized into five degrees of invasiveness e.g., naturalized, introduced, possibly invasive, moderately invasive and highly invasive. Additionally, there is the linear trend between degrees of invasivaness and use percentage of invasive plants. Total 39 species of invasive plants belonging to 29 families were recorded, which are generally used to treat 37 diseases, ranging from simple headache to highly complicated eye and heart diseases. The majority of the species used by the local inhabitants were herbs (16 species), followed by some shrubs (11 species), climbers (5 species), trees (5 species) and grasses (2 species). The use percentage of aboveground plant parts were higher (70.58%) than that of underground plant parts (16.18%).展开更多
Codon usage bias varies considerably among genomes and even within the genes of the same genome. In eukaryotic organisms, energy production in the form of oxidative phosphorylation (OXPHOS) is the only process under...Codon usage bias varies considerably among genomes and even within the genes of the same genome. In eukaryotic organisms, energy production in the form of oxidative phosphorylation (OXPHOS) is the only process under control of both nuclear and mitochondrial genomes. Although factors affecting codon usage in a single genome have been studied, this has not occurred when both interactional genomes are involved. Consequently, we investigated whether or not other factors influence codon usage of coevolved genes. We used Drosophila melanogaster as a model organism. Our χ^2 test on the number of codons of nuclear and mitochondrial genes involved in the OXPHOS system was significantly different (χ^2= 7945.16, P 〈 0.01). A plot of effective number of codons against GC3s content of nuclear genes showed that few genes lie on the expected curve, indicating that codon usage was random. Correspondence analysis indicated a significant correlation between axis 1 and codon adaptation index (R = 0.947, P 〈 0.01) in every nuclear gene sequence. Thus, codon usage bias of nuclear genes appeared to be affected by translational selection. Correlation between axis 1 coordinates and GC content (R = 0.814, P 〈 0.01) indicated that the codon usage of nuclear genes was also affected by GC composition. Analysis of mitochondrial genes did not reveal a significant correlation between axis 1 and any parameter. Statistical analyses indicated that codon usages of both nDNA and mtDNA were subjected to context-dependent mutations.展开更多
Purpose: Research fronts build on recent work, but using times cited as a traditional indicator to detect research fronts will inevitably result in a certain time lag. This study attempts to explore the effects of us...Purpose: Research fronts build on recent work, but using times cited as a traditional indicator to detect research fronts will inevitably result in a certain time lag. This study attempts to explore the effects of usage count as a new indicator to detect research fronts in shortening the time lag of classic indicators in research fronts detection. Design/methodology/approach: An exploratory study was conducted where the new indicator "usage count" was compared to the traditional citation count, "times cited," in detecting research fronts of the regenerative medicine domain. An initial topic search of the term "regenerative medicine" returned 10,553 records published between 2000 and 2015 in the Web of Science (WoS). We first ranked these records with usage count and times cited, respectively, and selected the top 2,000 records for each. We then performed a co-citation analysis in order to obtain the citing papers of the co-citation clusters as the research fronts. Finally, we compared the average publication year of the citing papers as well as the mean cited year of the co-citation clusters. Findings: The citing articles detected by usage count tend to be published more recently compared with times cited within the same research front. Moreover, research fronts detected by usage count tend to be within the last two years, which presents a higher immediacy and real-time feature compared to times cited. There is approximately a three-year time span among the mean cited years (known as "intellectual base") of all clusters generated by usage count and this figure is about four years in the network of times cited. In comparison to times cited, usage count is a dynamic and instant indicator. Research limitations: We are trying to find the cutting-edge research fronts, but those generated based on co-citations may refer to the hot research fronts. The usage count of older highly cited papers was not taken into consideration, because the usage count indicator released by WoS only reflects usage logs after February 2013. Practical implications: The article provides a new perspective on using usage count as a new indicator to detect research fronts.Originality/value: Usage count can greatly shorten the time lag in research fronts detection, which would be a promising complementary indicator in detection of the latest research fronts.展开更多
文摘Manure management is an essential component of dairy production. Nutrient-laden, field-applied dairy manure often serves as a fertilizer source, but can also pose environmental threats if not properly managed. The Haak dairy farm, located in Decatur, Arkansas, was granted a permit by the Arkansas Department of Environmental Quality (ADEQ) to employ a unique method in treating and storing cattle manure generated during the milking process. This method includes minimizing water use in wash water, dry scraping solids to combine with sawdust for composting and pumping effluent underground into a sloped concrete basin that serves as secondary solid separator before transporting the manure effluent into an interception trench and an adjacent grassed field to facilitate manure nutrient uptake and retention. The Arkansas Discovery Farm program (ADF) is conducting research to evaluate the environmental performance of the dairy’s milk center wash water treatment system (MCWW) by statistical analysis, characterization of phosphorus (P) migration in soil downslope from the inception trench, temperature measurements, and nutrient analysis of a stored dry stack manure/sawdust mixture. Goals included determining possible composting effectiveness along with comparisons to untreated dairy manure and quantifying the use of on-farm water. Results from this research demonstrated that: 1) The MCWW was effective at retaining manure-derived nutrients and reducing field nutrient migration as the MCWW interception trench had significantly higher total nitrogen (TN) (804.2 to 4.1), total phosphorus (TP) (135.6 to 1.5), and water extractable phosphorus (WEP) (55.0 to 1.0) concentrations in milligrams per liter (mg⋅L<sup>-1</sup>) than the downhill freshwater pond respectively;2) temperature readings of the manure dry stack indicated heightened levels of microbial and thermal activity, but did not reach a standard composting temperature of 54°C;3) manure dry stack nutrient content was typically higher than untreated dairy manure when measured on a “dry basis” in ppm, but was lower on an “as is basis” in ppm and kg/metric ton;and 4) water meter readings showed that the greatest use of on-farm water was for farm-wide cattle drinking (18.77), followed by water used in the milking center (3.45) and then followed by human usage (0.02) measured in cubic meters per day (m<sup>3</sup>⋅d<sup>-1</sup>). These results demonstrate that practical innovations in agricultural engineering and environmental science, such as the Haak dairy’s manure treatment system, can effectively reduce environmental hazards that accompany the management of manure at this dairy operation.
基金National Foundation for Science and Technology Development(No.502.01-2020.308).
文摘This study investigates how financial literacy and behavioral traits affect the adoption of electronic payment(ePayment)services in Japan.We construct a financial literacy index using a representative sample of 25,000 individuals from the Bank of Japan’s 2019 Financial Literacy Survey.We then analyze the relationship between this index and the extensive and intensive usage of two types of payment services:electronic money(e-money)and mobile payment apps.Using an instrumental variable approach,we find that higher financial literacy is positively associated with a higher likelihood of adopting ePayment services.The empirical results suggest that individuals with higher financial literacy use payment services more frequently.We also find that risk-averse people are less likely to adopt and use ePayment services,whereas people with herd behavior tend to adopt and use ePayment services more.Our empirical results also suggest that the effects of financial literacy on the adoption and use of ePayment differ among people with different behavioral traits.
文摘This work;It was made to determine the positive and negative usage information, attitudes and behaviors of social networking networks for users. Today, it is well known how the wide social effects of social networking sites are widespread and effective. As far as it can be followed from written and visual media, it causes significant damages for attitudes and behaviors for individuals. Looking at the results of the study, it seems impossible to limit the time and necessity of these networks for people, but it is understood that people force their limits and capacity. It was determined that the general acceptance and rejection areas are mixed and the dominant distinctive effects were weakened. Unable to prevent social dissolution and deterioration was realized by these social networks of networks. However, we cannot only talk about negative effects because their positive effects should be mentioned. Data were obtained in this direction. For example, some segments encourage the users of these sites to have more freedom, to develop democracy and human rights awareness. However, the real problem is when and where to stand. This study;Social networking networks use information, attitudes and behaviors;It was carried out for the purpose of evaluating the use of nicknames and networks for the use of networks. The data of the study were obtained by the application of a questionnaire and the data obtained were analyzed with appropriate statistical analysis methods. In the first part of the study, field study/operational concept scanning is performed and theoretical information is included. In the second part, the purpose of the study, the problem status, the importance of the study, limitations, assumptions, problem question, research method, research universe and sample are specified and informed. In the third section, the data obtained using appropriate statistical methods are analyzed. In the last section, some important suggestions and comments are made in the light of the data obtained.
文摘[目的/意义]对比分析相同主题的不同类型科学文献的使用行为,利用用户学术行为数据全面测评学术论文影响力。[方法/过程]基于Web of Science数据库中学术论文使用次数,分析比较不同学科文献的使用差异。从文献使用入手,收集2013-2017年3D打印领域的论文数据,以化学、工程文献为对比分析对象,从论文的学科视角分析使用次数与被引频次之间的相关性,分析高使用与高引用(Top 10%)论文的重合文献,探测文献使用差异,并进行独立样本T检验。[结果/结论]U1与被引次数成微弱正相关,U2与被引次数显著性相关;两学科的科学论文在使用上存在统计学意义上的显著差异,可能原因是不同学科学者的文献使用行为不同。此外,文献类型对使用次数有影响,综述类文献信息量较为丰富,从而可以获得更多的使用、引用。
基金supported in part by the Hi-Tech Re-search and Development Program of China ("863" Program) (No. 2007AA02Z329)the National Natural Science Foundation of China (Grant No. 20060213024)
文摘Codon usage in chloroplast genome of six seed plants (Arabidopsis thaliana, Populus alba, Zea mays, Triticum aestivum, Pinus koraiensis and Cycas taitungensis) was analyzed to find general patterns of codon usage in chloroplast genomes of seed plants. The results show that chloroplast genomes of the six seed plants had similar codon usage patterns, with a strong bias towards a high representation of NNA and NNT codons. In chloroplast genomes of the six seed plants, the effective number of codons (ENC) for most genes was similar to that of the expected ENC based on the GC content at the third codon position, but several genes with low ENC values were laying below the expected curve. All of these data indicate that codon usage was dominated by a mutational bias in chloroplast genomes of seed plants and that selection appeared to be limited to a subset of genes and to only subtly affect codon usage. Meantime, four, six, eight, nine, ten and 12 codons were defined as the optimal codons in chloroplast genomes of the six seed plants.
基金supported by the National Natural Science Foundation of China (31401822)
文摘Apple(Malus×domestica) has been proposed as an important woody plant and the major cultivated fruit trees in temperate regions. Apple whole genome sequencing has been completed, which provided an excellent opportunity for genome-wide analysis of the synonymous codon usage patterns. In this study, a multivariate bioinformatics analysis was performed to reveal the characteristics of synonymous codon usage and the main factors affecting codon bias in apple. The neutrality, correspondence, and correlation analyses were performed by Codon W and SPSS(Statistical Product and Service Solutions) programs, indicating that the apple genome codon usage patterns were affected by mutational pressure and selective constraint. Meanwhile, coding sequence length and the hydrophobicity of proteins could also influence the codon usage patterns. In short, codon usage pattern analysis and determination of optimal codons has laid an important theoretical basis for genetic engineering, gene prediction and molecular evolution studies in apple.
文摘在经济全球化背景下,出于贸易交流、文化传播等活动的需要,世界语言—英语被广泛学习。各国语言学家粗略地把英语分为英国英语和美国英语两大变体。因为美国的强国地位及其好莱坞效应,美国英语在各种场合较之英国英语被更广泛使用。而在与美国接壤的加拿大,一直被语言学家定义为以英国英语为基础,受美国英语强烈影响的加拿大英语仍在全球化背景下保持着自己的语言特色。文章通过对Guide to Canadian English Usage(第二版)的解析,粗略列举加拿大英语中现存的特色词汇并与英、美英语进行比较、分析。
基金supported by the National Basic Research Program of China (2014CB138702)the National Natural Science Foundation of China (31502001)
文摘Synonymous codon usage pattern presumably reflects gene expression optimization as a result of molecular evolution. Though much attention has been paid to various model organisms ranging from prokaryotes to eukaryotes, codon usage has yet been extensively investigated for model legume Medicago truncatula. In present study, 39 531 available coding sequences (CDSs) from M. truncatula were examined for codon usage bias (CUB). Based on analyses including neutrality plots, effective number of codons plots, and correlations between optimal codons frequency and codon adaptation index, we conclude that natural selection is a major driving force in M. truncatula CUB. We have identified 30 optimal codons encoding 18 amino acids based on relative synonymous codon usage. These optimal codons characteristically end with A or T, except for AGG and TTG encoding arginine and leucine respectively. Optimal codon usage is positively correlated with the GC content at three nucleotide positions of codons and the GC content of CDSs. The abundance of expressed sequence tag is a proxy for gene expression intensity in the legume, but has no relatedness with either CDS length or GC content. Collectively, we unravel the synonymous codon usage pattern in M. truncatula, which may serve as the valuable information on genetic engineering of the model legume and forage crop.
基金Supported by Earmarked Fund for China Agriculture Research System(CARS-31-15)Construction of Plateau Discipline of Fujian Province(102/71201801101)
文摘[Objective] The objective of this study was to understand the codon usage bias pattern of banana pathogenesis-related 17 gene, Basic Secretory Protease gene(MaBSP). [Method] Relative codon usage patterns of MaBSP were calculated using the software CodonW version 1.4.2. and the web-based tool(http://kazusa.or.jp/codon/).[Result] Our findings showed that C-ended and G-ended codons were the most preferential except the TER codon UGA which was coded for by just one codon. The ENc value, relationship between AT bias and GC bias, Random synonymous codon usage(RSCU) and CAI all showed that codon bias usage existed in MaBSP gene.[Conclusion] The codon usage patterns of MaBSP gene is principally influenced by natural selection in the third position. However, other multiple factors also influence this pattern.
文摘Codon usage bias(CUB) is a unique property of genome which refers to non-random usage of synonymous codons in coding sequences. The present study makes an attempt to find out the pattern of CUB in chloroplast(cp) genes among three tea species, i.e., Camellia sinensis var. assamica(Assam tea), Camellia sinensis var. sinensis(Chinese tea) and Camellia pubicosta(wild tea species) as no work on CUB was reported earlier. To understand the patterns of codon usage among the cp genes of three tea groups, we used bioinformatic tools to investigate the protein coding sequences of cp genes. In our present study, the mean nucleobase T was the highest whereas C was the lowest in all the three tea groups. The overall AT content was more than GC content, i.e., genes were AT rich. The scaled chi-square(SCS) value indicated that the CUB of cp genes was low. The codon CGT(Arg) was over-represented in C. sinensis var. sinensis whereas GGA(Pro) was over-represented in C. pubicosta species. Heatmap study revealed that most of the GC ending codons showed positive correlations between codon usage and GC3 while AT ending codons exhibited negative correlations. From neutrality plot analysis, it was evident that natural selection had played a major role, while mutation pressure exerted a minor effect in the CUB of cp genes in three tea groups. Highly significant(P<0.01) positive correlation was found between SCS and synonymous codon usage order(SCUO) of cp genes which suggested that high expression of cp genes was associated with high degree of CUB.
基金supported by National Key Research and Development Program of China (No.2017YFB903304)the State Grid Science and Technology Program (Hybrid Simnlation Key Technology for Integrated Energy System and Platform Construction)
文摘An integrated energy service company in an industrial park or commercial building is responsible for managing all energy sources in their local region, including electricity, water, gas, heating, and cooling. To reduce energy wastage and increase energy utilization, it is necessary to perform efficiency analyses and diagnoses on integrated energy systems(IESs). However, the integrated energy data necessary for energy efficiency analyses and diagnoses come from a wide variety of instruments, each of which uses different transmission protocols and data formats. This makes it challenging to handle energy-flow data in a unified manner. Thus, we have constructed a unified model for diagnosing energy usage abnormalities in IESs. Using this model, the data are divided into working days and non-working days, and benchmark values are calculated after the data have been weighted to enable unified analysis of several types of energy data. The energy-flow data may then be observed, managed, and compared in all aspects to monitor sudden changes in energy usage and energy wastage. The abnormal data identified and selected by the unified model are then subjected to big-data analysis using technical management tools, enabling the detection of user problems such as abnormalities pertaining to acquisition device, metering, and energy usage. This model facilitates accurate metering of energy data and improves energy efficiency. The study has significant implications in terms of fulfilling the energy saving.
基金Under the auspices of National Natural Science Foundation of China(No.41571146)National Natural Science Youth Foundation of China(No.51708276)Postdoctoral Science Foundation of China(No.2017M611781)
文摘Future or smart community, which mainly refers to the development of community information and communication technology(ICT) platforms or devices, has received considerable attention from urban governments and scholars. However, only a few studies have been conducted to test the actual effects of using these community ICT platforms or devices on the community satisfaction of residents. Therefore, the present study conducts a survey in 40 communities in Nanjing, China and uses a mixed linear regression model to determine the relationship between community ICT usage and community satisfaction. Results indicate that residents with high-level community ICT usage are more satisfied with their community than those with low-level community ICT usage. Moreover, evident differences are observed regarding the influence of new commodity, old commodity and affordable housing communities in Nanjing. These findings are meaningful for the construction and development of future communities.
文摘Species diversity and ethno-medicinal usage of 39 species of invasive plants were explored in and around two protected areas, Khadimnagar National Park (KNP) and Rema-Kalenga Wildlife Sanctu- ary (RKWS), of northeastern Bangladesh,. Status of invasive plants were investigated in 60 sample plots with 5 different habitat types, including forest, roadside, homestead, fallow land and others (ponds, canals, water logged areas, agricultural land, etc.). Data about the usage of invasive plants in traditional health care were collected through interviewing 110 households. Among the five habitat types, fallow land (28 species).possessed the highest number of species, followed by roadside (25 species), forest (23 species), homestead (22 species) and others (13 species). Based on the survey, invasive plants of study areas were also categorized into five degrees of invasiveness e.g., naturalized, introduced, possibly invasive, moderately invasive and highly invasive. Additionally, there is the linear trend between degrees of invasivaness and use percentage of invasive plants. Total 39 species of invasive plants belonging to 29 families were recorded, which are generally used to treat 37 diseases, ranging from simple headache to highly complicated eye and heart diseases. The majority of the species used by the local inhabitants were herbs (16 species), followed by some shrubs (11 species), climbers (5 species), trees (5 species) and grasses (2 species). The use percentage of aboveground plant parts were higher (70.58%) than that of underground plant parts (16.18%).
基金supported by the National Natural Science Foundation of China (No.30770302 and 30570970)the Program of Ministry of Science and Technology of the Republic of China (No.2006FY110500)partially by the National Science Fund for Fostering Talents in Basic Research (NSFC-J0630964/J0109)
文摘Codon usage bias varies considerably among genomes and even within the genes of the same genome. In eukaryotic organisms, energy production in the form of oxidative phosphorylation (OXPHOS) is the only process under control of both nuclear and mitochondrial genomes. Although factors affecting codon usage in a single genome have been studied, this has not occurred when both interactional genomes are involved. Consequently, we investigated whether or not other factors influence codon usage of coevolved genes. We used Drosophila melanogaster as a model organism. Our χ^2 test on the number of codons of nuclear and mitochondrial genes involved in the OXPHOS system was significantly different (χ^2= 7945.16, P 〈 0.01). A plot of effective number of codons against GC3s content of nuclear genes showed that few genes lie on the expected curve, indicating that codon usage was random. Correspondence analysis indicated a significant correlation between axis 1 and codon adaptation index (R = 0.947, P 〈 0.01) in every nuclear gene sequence. Thus, codon usage bias of nuclear genes appeared to be affected by translational selection. Correlation between axis 1 coordinates and GC content (R = 0.814, P 〈 0.01) indicated that the codon usage of nuclear genes was also affected by GC composition. Analysis of mitochondrial genes did not reveal a significant correlation between axis 1 and any parameter. Statistical analyses indicated that codon usages of both nDNA and mtDNA were subjected to context-dependent mutations.
基金supported by the National Social Science Foundation of China(Grant No.:14BTQ030)
文摘Purpose: Research fronts build on recent work, but using times cited as a traditional indicator to detect research fronts will inevitably result in a certain time lag. This study attempts to explore the effects of usage count as a new indicator to detect research fronts in shortening the time lag of classic indicators in research fronts detection. Design/methodology/approach: An exploratory study was conducted where the new indicator "usage count" was compared to the traditional citation count, "times cited," in detecting research fronts of the regenerative medicine domain. An initial topic search of the term "regenerative medicine" returned 10,553 records published between 2000 and 2015 in the Web of Science (WoS). We first ranked these records with usage count and times cited, respectively, and selected the top 2,000 records for each. We then performed a co-citation analysis in order to obtain the citing papers of the co-citation clusters as the research fronts. Finally, we compared the average publication year of the citing papers as well as the mean cited year of the co-citation clusters. Findings: The citing articles detected by usage count tend to be published more recently compared with times cited within the same research front. Moreover, research fronts detected by usage count tend to be within the last two years, which presents a higher immediacy and real-time feature compared to times cited. There is approximately a three-year time span among the mean cited years (known as "intellectual base") of all clusters generated by usage count and this figure is about four years in the network of times cited. In comparison to times cited, usage count is a dynamic and instant indicator. Research limitations: We are trying to find the cutting-edge research fronts, but those generated based on co-citations may refer to the hot research fronts. The usage count of older highly cited papers was not taken into consideration, because the usage count indicator released by WoS only reflects usage logs after February 2013. Practical implications: The article provides a new perspective on using usage count as a new indicator to detect research fronts.Originality/value: Usage count can greatly shorten the time lag in research fronts detection, which would be a promising complementary indicator in detection of the latest research fronts.