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Sequencing and Analysis of G HR Gene from Genomic DNA Pools of Mink
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作者 Rong Min Xu Jiaping +2 位作者 Tu Jianfeng Gao Feng Xing Xiumei 《Animal Husbandry and Feed Science》 CAS 2018年第3期166-167,205,共3页
In order to study the single nucleotide polymorphisms (SNPs) of growth hormone receptor (GHR) gene in mink populations, genomic DNA pools of Minghua black minks and silver-blue minks were constructed, and the 10^t... In order to study the single nucleotide polymorphisms (SNPs) of growth hormone receptor (GHR) gene in mink populations, genomic DNA pools of Minghua black minks and silver-blue minks were constructed, and the 10^th exon of GHR gene was PCR amplified from the two DNA pools and sequenced. The results showed that two SNPs were found at position 209 (T/C) and position 533 (C/A) of the 10^th exon of GHR gene in the two mink populations. 展开更多
关键词 MINK Growth hormone receptor (GHR) gene dna pools SEQUENCING Single nucleotide polymorphisms (SNPs)
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Development of a stable SCAR marker for rapid identification of Ganoderma lucidum Hunong 5 cultivar using DNA pooling method and inter-simple sequence repeat markers 被引量:1
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作者 CHAO Wen-zheng TANG Chuan-hong +2 位作者 ZHANG Jing-song YU Ling Honda Yoichi 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2018年第1期130-138,共9页
The cultivar Ganoderma lucidum Hunong 5 was obtained using cross-breeding. Hunong 5 has high commercial value due to its high polysaccharide and triterpene content, This is the first report of using a DNA pooling meth... The cultivar Ganoderma lucidum Hunong 5 was obtained using cross-breeding. Hunong 5 has high commercial value due to its high polysaccharide and triterpene content, This is the first report of using a DNA pooling method to develop a stable sequence characterized amplified region (SCAR) marker for rapid identification of the G. lucidum Hunong 5 cultivar. The SCAR marker was developed by first generating and sequencing a distinctive inter simple sequence repeat (ISSR) fragment (882 bp) from G. lucidum Hunong 5 cultivar. A stable SCAR primer pair GLH5F/GLH5R were obtained to identify the cultivar and the SCAR marker is a DNA fragment of 773 bp. 展开更多
关键词 dna pooling Ganoderma lucidum Hunong 5 cultivar ISSR marker SCAR marker
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基于全基因组重测序技术筛查通道侗族原发性高血压易感基因
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作者 周太梅 杨华 +4 位作者 江兴林 杨通平 杭远欣 吴斯 王海英 《中华高血压杂志(中英文)》 CAS CSCD 北大核心 2024年第2期153-163,共11页
目的 采用Illumina二代测序技术结合DNA pooling策略和生物信息学分析,在全基因组水平上初步筛查通道侗族人群原发性高血压的易感基因。方法 以100例通道侗族原发性高血压患者及100名健康对照人群为研究对象,提取其外周血DNA并分别制备... 目的 采用Illumina二代测序技术结合DNA pooling策略和生物信息学分析,在全基因组水平上初步筛查通道侗族人群原发性高血压的易感基因。方法 以100例通道侗族原发性高血压患者及100名健康对照人群为研究对象,提取其外周血DNA并分别制备两组的DNA pooling,构建文库并采用二代测序技术进行测序。使用比对软件BWA将测序数据与参考基因组进行比对,得到的BAM比对结果文件采用GATK软件对单核苷酸多态性(SNP)和插入缺失(InDel)进行检测,采用CNVnator检测拷贝数变异(CNV),Breakdancer检测结构变异(SV),使用ANNOVAR和内部软件AnnoDB对变异结果进行注释及影响预测。针对原发性高血压组和对照组编码区共有SNP进行Fisher精确检验,筛选出P<0.05的SNP位点,采用在线平台DAVID和KOBAS对筛选出来的差异表达基因进行基因本体(GO)功能注释和京都基因和基因组百科全书(KEGG)通路富集分析,采用STRING数据库的蛋白质相互作用分析平台和Cytoscape软件进行关键基因筛选及相互作用网络图的构建。结果 对照组与EH组分别检测到4 311 896和4 554 994个SNP位点,InDel位点总数分别为772 269和870 230个,CNV总数分别为8 027和7 052个,SV总数分别为5 534和8 072个。对照组与高血压组编码区共有的SNP为21 861个。在Cytoscape软件的cytoNCA模块下基于介数中心性(BC)算法进行网络拓扑结构分析以筛选关键基因时,发现两组编码区的差异基因丝氨酸/苏氨酸蛋白激酶1(AKT1)、表皮生长因子受体(EGFR)、血管紧张素转换酶(ACE)、整合素β_(1)亚单位(ITGB1)、基质金属蛋白酶9(MMP9)、低密度脂蛋白受体(LDLR)等BC值更高,在整个网络图中与其他基因之间的通路联系更密集,流经的信息量更多。结论 通过DNA pooling与二代测序技术相结合,筛查出一批可能与通道侗族人群EH发生、发展相关的易感基因。通道侗族原发性高血压的发病机制可能主要涉及AKT1、EGFR、ACE介导的信号传导通路。 展开更多
关键词 原发性高血压 全基因组重测序 dna pooling 通道侗族
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