半乳糖凝聚素-3(Galectin-3,Gal-3)是一种多功能蛋白,参与机体内的多种生命活动过程。为分析大鼠Rattus norvegicus gal-3 c DNA分子多样性,在分析Gen Bank注册的大鼠gal-3 c DNA序列的同时,从三只不同大鼠个体的肝脏第一链c DNA,共计9...半乳糖凝聚素-3(Galectin-3,Gal-3)是一种多功能蛋白,参与机体内的多种生命活动过程。为分析大鼠Rattus norvegicus gal-3 c DNA分子多样性,在分析Gen Bank注册的大鼠gal-3 c DNA序列的同时,从三只不同大鼠个体的肝脏第一链c DNA,共计9个独立实验中克隆gal-3开放阅读框OFR(Open reading frame)。分析结果表明,在已注册的序列中存在1个单核苷酸多态性(Single nucleotide polymorphism,SNP)。本实验从1-3号大鼠肝脏分别获得118、95和120个克隆,新发现1处缺失和5处SNP,共克隆17个不同的gal-3 ORF,其中仅1个克隆与已报告大鼠gal-3 c DNA的ORF完全相同。从1号和3号个体肝脏中分别克隆11和14个不同的gal-3 ORF,揭示大鼠gal-3 c DNA存在个体水平的分子多样性。展开更多
Background: Sheep is important in the socio-economic lives of people around the world. It is estimated that more than half of our once common livestock breeds are now endangered. Since genetic characterization of Nige...Background: Sheep is important in the socio-economic lives of people around the world. It is estimated that more than half of our once common livestock breeds are now endangered. Since genetic characterization of Nigerian sheep is still lacking, we analyzed ten morphological traits on 402 animals and 15 microsatellite DNA markers in 384 animals of the 4 Nigerian sheep breeds to better understand genetic diversity for breeding management and germplasm conservation. Results: Morphological traits of Uda and Balami were significantly (P < 0.05) higher than Yankasa, which were both higher than West African Dwarf (WAD) sheep. Stepwise discriminant analysis showed tail length, rump height, chest girth, ear length and chest depth as the most discriminating variables for classification. Mahalanobis distances show the least differentiation between Uda and Balami and the largest between WAD and Balami sheep. While 93.3% of WAD sheep were correctly assigned to their source genetic group, 63.9% of Yankasa, 61.2% of Balami and 45.2% of Uda were classified correctly by nearest neighbour discriminant analysis. The overall high Polymorphism Information Content (PIC) of all microsatellite markers ranged from 0.751 to 0.927 supporting their use in genetic characterization. Expected heterozygosity was high for all loci (0.783 to 0.93). Mean heterozygote deficiency across all populations (0.171 to 0.534) possibly indicate significant inbreeding (P < 0.05). Mean values for FST , FIT and FIS statistics across all loci were 0.088, 0.394 and 0.336 respectively. Yankasa and Balami are the most closely related breeds (DA = 0.184) while WAD and Balami are the farthest apart breeds (DA = 0.665), which is coincident with distance based on morphological analysis and population structure assessed by STRUCTURE. Conclusions: These results suggest that within-breed genetic variation in Nigerian sheep is higher than between-breeds and may be a valuable tool for genetic improvement and conservation. The higher genetic variability in Yankasa suggests the presence of unique ancestral alleles reflecting the presence of certain functional genes which may result in better adaptability in more agro-ecological zones of Nigeria. These genetic characteristics are potentially useful in planning improvement and conservation strategies in Nigerian indigenous sheep.展开更多
To analyze the biological effects of space environment,the diversity of genomic DNA between the space flight soybean 194(4126) with phenotype of good yield and good fruit quality induced by space flight and the soybea...To analyze the biological effects of space environment,the diversity of genomic DNA between the space flight soybean 194(4126) with phenotype of good yield and good fruit quality induced by space flight and the soybean with ground control was studied by amplified fragment length polymorphism(AFLP) method,and the polymorphism of space flight soybean 194(4126) was 3.56%.The differences of protein expression of seeds and leaves between the two kinds of soybeans were analysed by two-dimensional electrophoresis,PDQuest software and MALDI-TOF mass spectrometry.Results show that the loss and decrease of protein expression in 194(4126) soybean are subjected to the space fight of seeds,and three special proteins including Dehydrin,MAT1 and ceQORH are identified.It is concluded that the space environment changes the phenotype and genotype of soybeans due to the space flight of seeds.展开更多
文摘半乳糖凝聚素-3(Galectin-3,Gal-3)是一种多功能蛋白,参与机体内的多种生命活动过程。为分析大鼠Rattus norvegicus gal-3 c DNA分子多样性,在分析Gen Bank注册的大鼠gal-3 c DNA序列的同时,从三只不同大鼠个体的肝脏第一链c DNA,共计9个独立实验中克隆gal-3开放阅读框OFR(Open reading frame)。分析结果表明,在已注册的序列中存在1个单核苷酸多态性(Single nucleotide polymorphism,SNP)。本实验从1-3号大鼠肝脏分别获得118、95和120个克隆,新发现1处缺失和5处SNP,共克隆17个不同的gal-3 ORF,其中仅1个克隆与已报告大鼠gal-3 c DNA的ORF完全相同。从1号和3号个体肝脏中分别克隆11和14个不同的gal-3 ORF,揭示大鼠gal-3 c DNA存在个体水平的分子多样性。
基金supported by the College of Agriculture and Life Sciences,Cornell University, Ithaca, NY. USAsupport from the United States Agency for International Development (USAID) through the award of the Norman Borlaug Leadership Enhancement in Agriculture Program (LEAP)Fellowship to Moses Okpekuresearch grant from International Foundation for Science, Stockholm to Moses Okpeku
文摘Background: Sheep is important in the socio-economic lives of people around the world. It is estimated that more than half of our once common livestock breeds are now endangered. Since genetic characterization of Nigerian sheep is still lacking, we analyzed ten morphological traits on 402 animals and 15 microsatellite DNA markers in 384 animals of the 4 Nigerian sheep breeds to better understand genetic diversity for breeding management and germplasm conservation. Results: Morphological traits of Uda and Balami were significantly (P < 0.05) higher than Yankasa, which were both higher than West African Dwarf (WAD) sheep. Stepwise discriminant analysis showed tail length, rump height, chest girth, ear length and chest depth as the most discriminating variables for classification. Mahalanobis distances show the least differentiation between Uda and Balami and the largest between WAD and Balami sheep. While 93.3% of WAD sheep were correctly assigned to their source genetic group, 63.9% of Yankasa, 61.2% of Balami and 45.2% of Uda were classified correctly by nearest neighbour discriminant analysis. The overall high Polymorphism Information Content (PIC) of all microsatellite markers ranged from 0.751 to 0.927 supporting their use in genetic characterization. Expected heterozygosity was high for all loci (0.783 to 0.93). Mean heterozygote deficiency across all populations (0.171 to 0.534) possibly indicate significant inbreeding (P < 0.05). Mean values for FST , FIT and FIS statistics across all loci were 0.088, 0.394 and 0.336 respectively. Yankasa and Balami are the most closely related breeds (DA = 0.184) while WAD and Balami are the farthest apart breeds (DA = 0.665), which is coincident with distance based on morphological analysis and population structure assessed by STRUCTURE. Conclusions: These results suggest that within-breed genetic variation in Nigerian sheep is higher than between-breeds and may be a valuable tool for genetic improvement and conservation. The higher genetic variability in Yankasa suggests the presence of unique ancestral alleles reflecting the presence of certain functional genes which may result in better adaptability in more agro-ecological zones of Nigeria. These genetic characteristics are potentially useful in planning improvement and conservation strategies in Nigerian indigenous sheep.
基金Sponsored by the National High Technology Research and Development Program of China(Grant No. 2004AA231071)the Fund of Harbin Institute of Technology (Grant No.HITQNJS.2006.048 and HIT.2000.10)
文摘To analyze the biological effects of space environment,the diversity of genomic DNA between the space flight soybean 194(4126) with phenotype of good yield and good fruit quality induced by space flight and the soybean with ground control was studied by amplified fragment length polymorphism(AFLP) method,and the polymorphism of space flight soybean 194(4126) was 3.56%.The differences of protein expression of seeds and leaves between the two kinds of soybeans were analysed by two-dimensional electrophoresis,PDQuest software and MALDI-TOF mass spectrometry.Results show that the loss and decrease of protein expression in 194(4126) soybean are subjected to the space fight of seeds,and three special proteins including Dehydrin,MAT1 and ceQORH are identified.It is concluded that the space environment changes the phenotype and genotype of soybeans due to the space flight of seeds.
